Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CLRN2 Gene

Aliases for CLRN2 Gene

  • Clarin 2 2 3
  • Clarin-2 3

External Ids for CLRN2 Gene

Previous GeneCards Identifiers for CLRN2 Gene

  • GC04P017126
  • GC04P016871

Summaries for CLRN2 Gene

Entrez Gene Summary for CLRN2 Gene

  • This gene belongs to the clarin family of genes. The clarins appear to belong to a large superfamily of small integral membrane glycoproteins with four transmembrane domains. The exact function of this gene is unknown. [provided by RefSeq, Oct 2008]

GeneCards Summary for CLRN2 Gene

CLRN2 (Clarin 2) is a Protein Coding gene. An important paralog of this gene is CLRN3.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLRN2 Gene

Genomics for CLRN2 Gene

Regulatory Elements for CLRN2 Gene

Genomic Location for CLRN2 Gene

17,515,165 bp from pter
17,527,104 bp from pter
11,940 bases
Plus strand

Genomic View for CLRN2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CLRN2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLRN2 Gene

Proteins for CLRN2 Gene

  • Protein details for CLRN2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Protein Accession:
    Secondary Accessions:

    Protein attributes for CLRN2 Gene

    232 amino acids
    Molecular mass:
    25446 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CLRN2 Gene

Proteomics data for CLRN2 Gene at MOPED

Post-translational modifications for CLRN2 Gene

Other Protein References for CLRN2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CLRN2 Gene

Domains for CLRN2 Gene

Protein Domains for CLRN2 Gene


Suggested Antigen Peptide Sequences for CLRN2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • A0PK11
  • Belongs to the clarin family.
genes like me logo Genes that share domains with CLRN2: view

No data available for Gene Families for CLRN2 Gene

Function for CLRN2 Gene

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CLRN2

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CLRN2 Gene

Localization for CLRN2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CLRN2 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

Jensen Localization Image for CLRN2 Gene COMPARTMENTS Subcellular localization image for CLRN2 gene
Compartment Confidence
plasma membrane 3
extracellular 2
cytoskeleton 1
cytosol 1
nucleus 1

Gene Ontology (GO) - Cellular Components for CLRN2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CLRN2: view

Pathways for CLRN2 Gene

SuperPathways for CLRN2 Gene

No Data Available

Interacting Proteins for CLRN2 Gene

Gene Ontology (GO) - Biological Process for CLRN2 Gene


No data available for Pathways by source for CLRN2 Gene

Transcripts for CLRN2 Gene

mRNA/cDNA for CLRN2 Gene

(1) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CLRN2 Gene

Clarin 2:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CLRN2

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CLRN2 Gene

No ASD Table

Relevant External Links for CLRN2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CLRN2 Gene

mRNA expression in normal human tissues for CLRN2 Gene

mRNA differential expression in normal tissues according to GTEx for CLRN2 Gene

This gene is overexpressed in Testis (8.4), Brain - Hypothalamus (5.9), Brain - Spinal cord (cervical c-1) (5.7), and Brain - Hippocampus (4.7).

Protein differential expression in normal tissues for CLRN2 Gene

This gene is overexpressed in Rectum (69.0).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CLRN2 Gene

SOURCE GeneReport for Unigene cluster for CLRN2 Gene Hs.631526

genes like me logo Genes that share expressions with CLRN2: view

Expression partners for CLRN2 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for CLRN2 Gene

Orthologs for CLRN2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CLRN2 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia CLRN2 35
  • 87.21 (n)
  • 93.53 (a)
CLRN2 36
  • 94 (a)
(Canis familiaris)
Mammalia CLRN2 35
  • 90.09 (n)
  • 96.12 (a)
CLRN2 36
  • 96 (a)
(Mus musculus)
Mammalia Clrn2 35
  • 85.78 (n)
  • 94.4 (a)
Clrn2 16
Clrn2 36
  • 94 (a)
(Pan troglodytes)
Mammalia CLRN2 35
  • 98.99 (n)
  • 98.28 (a)
CLRN2 36
  • 98 (a)
(Rattus norvegicus)
Mammalia Clrn2 35
  • 85.63 (n)
  • 93.53 (a)
(Monodelphis domestica)
Mammalia CLRN2 36
  • 76 (a)
(Ornithorhynchus anatinus)
Mammalia CLRN2 36
  • 78 (a)
(Gallus gallus)
Aves CLRN2 35
  • 70.83 (n)
  • 68.53 (a)
CLRN2 36
  • 69 (a)
(Anolis carolinensis)
Reptilia CLRN2 36
  • 63 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia clrn2 35
  • 65.95 (n)
  • 62.5 (a)
(Danio rerio)
Actinopterygii LOC795807 35
  • 57.9 (n)
  • 50 (a)
CLRN2 36
  • 49 (a)
Species with no ortholog for CLRN2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CLRN2 Gene

Gene Tree for CLRN2 (if available)
Gene Tree for CLRN2 (if available)

Paralogs for CLRN2 Gene

Paralogs for CLRN2 Gene

Selected SIMAP similar genes for CLRN2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CLRN2: view

Variants for CLRN2 Gene

Sequence variations from dbSNP and Humsavar for CLRN2 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs1450668 -- 17,525,075(+) AATAT(C/T)TTTTG intron-variant
rs1551091 -- 17,515,476(+) TGTAA(A/G)GTGCG reference, synonymous-codon
rs1551092 -- 17,516,238(+) CTGGC(A/G)TTCAG intron-variant
rs1973003 -- 17,526,486(+) acccg(A/G)gaggc intron-variant
rs2034493 -- 17,524,477(+) TATCA(A/G)TCAAT intron-variant

Relevant External Links for CLRN2 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CLRN2 Gene

Disorders for CLRN2 Gene

No disorders were found for CLRN2 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for CLRN2 Gene

Publications for CLRN2 Gene

  1. USH3A transcripts encode clarin-1, a four-transmembrane-domain protein with a possible role in sensory synapses. (PMID: 12080385) Adato A. … Lancet D. (Eur. J. Hum. Genet. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for CLRN2 Gene

Sources for CLRN2 Gene

Back to Top