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Aliases for CLRN1-AS1 Gene

Subcategory (RNA class) for CLRN1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CLRN1-AS1 Gene

  • CLRN1 Antisense RNA 1 2 3
  • CLRN1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Clarin 1 Opposite Strand 2 3
  • Usher Critical Region Protein Pseudogene 3
  • CLRN1OS 3
  • UCRP 3

External Ids for CLRN1-AS1 Gene

ORGUL Members for CLRN1-AS1 Gene

Previous Symbols for CLRN1-AS1 Gene

  • CLRN1OS

Summaries for CLRN1-AS1 Gene

GeneCards Summary for CLRN1-AS1 Gene

CLRN1-AS1 (CLRN1 Antisense RNA 1) is an RNA Gene, and belongs to the lncRNA class.

Gene Wiki entry for CLRN1-AS1 Gene

fRNAdb sequence ontologies for CLRN1-AS1 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • mature_transcript: A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary and piRNA Summary for CLRN1-AS1 Gene

Genomics for CLRN1-AS1 Gene

Genomic Location for CLRN1-AS1 Gene

Start:
150,852,484 bp from pter
End:
151,080,726 bp from pter
Size:
228,243 bases
Orientation:
Plus strand

Genomic View for CLRN1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CLRN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLRN1-AS1 Gene

No data available for Regulatory Elements for CLRN1-AS1 Gene

Proteins for CLRN1-AS1 Gene

Post-translational modifications for CLRN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLRN1-AS1 Gene

Domains for CLRN1-AS1 Gene

Gene Families for CLRN1-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CLRN1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CLRN1-AS1 Gene

Function for CLRN1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CLRN1-AS1 Gene

Localization for CLRN1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CLRN1-AS1 Gene

Pathways for CLRN1-AS1 Gene

SuperPathways for CLRN1-AS1 Gene

No Data Available

Interacting Proteins for CLRN1-AS1 Gene

Gene Ontology (GO) - Biological Process for CLRN1-AS1 Gene

None

No data available for Pathways by source for CLRN1-AS1 Gene

Transcripts for CLRN1-AS1 Gene

mRNA/cDNA for CLRN1-AS1 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CLRN1-AS1 Gene

CLRN1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CLRN1-AS1 Gene

No ASD Table

Relevant External Links for CLRN1-AS1 Gene

GeneLoc Exon Structure for
CLRN1-AS1
ECgene alternative splicing isoforms for
CLRN1-AS1

Expression for CLRN1-AS1 Gene

mRNA expression in normal human tissues for CLRN1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CLRN1-AS1 Gene

This gene is overexpressed in Whole Blood (16.0), Liver (4.9), and Uterus (4.4).

SOURCE GeneReport for Unigene cluster for CLRN1-AS1 Gene Hs.570680

genes like me logo Genes that share expressions with CLRN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for CLRN1-AS1 Gene

Orthologs for CLRN1-AS1 Gene

Evolution for CLRN1-AS1 Gene

ENSEMBL:
Gene Tree for CLRN1-AS1 (if available)
TreeFam:
Gene Tree for CLRN1-AS1 (if available)

No data available for Orthologs for CLRN1-AS1 Gene

Paralogs for CLRN1-AS1 Gene

No data available for Paralogs for CLRN1-AS1 Gene

Variants for CLRN1-AS1 Gene

Sequence variations from dbSNP and Humsavar for CLRN1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs171466 -- 151,024,717(-) cttta(A/G)aggga intron-variant
rs189822 -- 151,024,662(-) tggaa(A/G)aagcc intron-variant
rs358953 -- 151,047,110(+) aagac(A/G)ccaaa intron-variant
rs358954 -- 151,050,820(+) CCTTT(C/T)TTGGA intron-variant
rs358955 -- 151,051,974(+) CCACC(A/G)TGCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CLRN1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv829756 CNV Gain+Loss 17160897
esv2726047 CNV Deletion 23290073
esv2726048 CNV Deletion 23290073
esv2726049 CNV Deletion 23290073
esv2726050 CNV Deletion 23290073
esv2656706 CNV Deletion 23128226
dgv1520e1 CNV Complex 17122850
nsv877648 CNV Gain 21882294

Relevant External Links for CLRN1-AS1 Gene

HapMap Linkage Disequilibrium report
CLRN1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CLRN1-AS1 Gene

Disorders for CLRN1-AS1 Gene

No disorders were found for CLRN1-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for CLRN1-AS1 Gene

Publications for CLRN1-AS1 Gene

  1. Mutations in a novel gene with transmembrane domains underlie Usher syndrome type 3. (PMID: 11524702) Joensuu T. … Sankila E.-M. (Am. J. Hum. Genet. 2001) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Alternative splice variants of the USH3A gene Clarin 1 (CLRN1). (PMID: 20717163) Vastinsalo H. … Sankila E.M. (Eur. J. Hum. Genet. 2011) 3
  4. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. (PMID: 23382691) Lauc G. … Rudan I. (PLoS Genet. 2013) 3
  5. Down-regulation of UCRP and UBE2L6 in BRCA2 knocked-down human breast cells. (PMID: 15670748) Tripathi M.K. … Chaudhuri G. (Biochem. Biophys. Res. Commun. 2005) 23

Products for CLRN1-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate CLRN1-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for CLRN1-AS1
    • Block miRNA regulation of CLRN1-AS1 using miScript Target Protectors

    Sources for CLRN1-AS1 Gene

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