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Aliases for CLPSL2 Gene

Aliases for CLPSL2 Gene

  • Colipase-Like 2 2 3
  • C6orf126 3 4
  • Chromosome 6 Open Reading Frame 126 2
  • Colipase-Like Protein C6orf126 3
  • Colipase-Like Protein 2 3
  • DJ510O8.5 3
  • AAAL3045 3
  • UNQ3045 3

External Ids for CLPSL2 Gene

Previous Symbols for CLPSL2 Gene

  • C6orf126

Summaries for CLPSL2 Gene

GeneCards Summary for CLPSL2 Gene

CLPSL2 (Colipase-Like 2) is a Protein Coding gene. GO annotations related to this gene include enzyme activator activity.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLPSL2 Gene

Genomics for CLPSL2 Gene

Genomic Location for CLPSL2 Gene

Start:
35,776,594 bp from pter
End:
35,779,552 bp from pter
Size:
2,959 bases
Orientation:
Plus strand

Genomic View for CLPSL2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CLPSL2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLPSL2 Gene

No data available for Regulatory Elements for CLPSL2 Gene

Proteins for CLPSL2 Gene

  • Protein details for CLPSL2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6UWE3-COLL2_HUMAN
    Recommended name:
    Colipase-like protein 2
    Protein Accession:
    Q6UWE3
    Secondary Accessions:
    • B0QZ45
    • Q5T9G3

    Protein attributes for CLPSL2 Gene

    Size:
    100 amino acids
    Molecular mass:
    10812 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CLPSL2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CLPSL2 Gene

Proteomics data for CLPSL2 Gene at MOPED

Post-translational modifications for CLPSL2 Gene

No Post-translational modifications

Other Protein References for CLPSL2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CLPSL2 Gene

Domains for CLPSL2 Gene

Protein Domains for CLPSL2 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

COLL2_HUMAN
Family:
  • Belongs to the colipase family.:
    • Q6UWE3
genes like me logo Genes that share domains with CLPSL2: view

No data available for Gene Families for CLPSL2 Gene

Function for CLPSL2 Gene

Gene Ontology (GO) - Molecular Function for CLPSL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008047 enzyme activator activity IEA --
genes like me logo Genes that share ontologies with CLPSL2: view

Phenotypes for CLPSL2 Gene

GenomeRNAi human phenotypes for CLPSL2:
genes like me logo Genes that share phenotypes with CLPSL2: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CLPSL2 Gene

Localization for CLPSL2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CLPSL2 Gene

Secreted.

Gene Ontology (GO) - Cellular Components for CLPSL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with CLPSL2: view

Pathways for CLPSL2 Gene

SuperPathways for CLPSL2 Gene

No Data Available

Interacting Proteins for CLPSL2 Gene

Gene Ontology (GO) - Biological Process for CLPSL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007586 digestion IEA --
GO:0016042 lipid catabolic process IEA --
GO:0043085 positive regulation of catalytic activity IEA --
genes like me logo Genes that share ontologies with CLPSL2: view

No data available for Pathways by source for CLPSL2 Gene

Transcripts for CLPSL2 Gene

mRNA/cDNA for CLPSL2 Gene

(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CLPSL2 Gene

Colipase-like 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CLPSL2 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4
SP1: -
SP2: -

Relevant External Links for CLPSL2 Gene

GeneLoc Exon Structure for
CLPSL2
ECgene alternative splicing isoforms for
CLPSL2

Expression for CLPSL2 Gene

mRNA expression in normal human tissues for CLPSL2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CLPSL2 Gene

This gene is overexpressed in Pancreas (28.6) and Brain - Anterior cingulate cortex (BA24) (4.2).

SOURCE GeneReport for Unigene cluster for CLPSL2 Gene Hs.259563

genes like me logo Genes that share expressions with CLPSL2: view

Orthologs for CLPSL2 Gene

This gene was present in the common ancestor of mammals.

Orthologs for CLPSL2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CLPSL2 36
  • 99.67 (n)
  • 100 (a)
CLPSL2 37
  • 50 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CLPSL2 36
  • 74.23 (n)
  • 67.01 (a)
dog
(Canis familiaris)
Mammalia CLPSL2 36
  • 74.46 (n)
  • 66.23 (a)
CLPSL2 37
  • 61 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Clpsl2 36
  • 70.27 (n)
  • 62.16 (a)
Clpsl2 16
Clpsl2 37
  • 51 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Clpsl2 36
  • 65.02 (n)
  • 55.56 (a)
Species with no ortholog for CLPSL2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CLPSL2 Gene

ENSEMBL:
Gene Tree for CLPSL2 (if available)
TreeFam:
Gene Tree for CLPSL2 (if available)

Paralogs for CLPSL2 Gene

No data available for Paralogs for CLPSL2 Gene

Variants for CLPSL2 Gene

Sequence variations from dbSNP and Humsavar for CLPSL2 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs2296662 -- 35,776,992(-) AGTTT(C/G)GGGAG intron-variant
rs2296663 -- 35,776,969(-) AGGAC(C/T)GAGGC intron-variant
rs2478467 -- 35,777,878(+) gggat(C/T)gcatc reference, missense, intron-variant
rs2766577 -- 35,775,456(+) ACCAC(A/T)TTGGG upstream-variant-2KB
rs2766578 -- 35,776,526(+) TCCGC(C/G/T)GGGGT upstream-variant-2KB

Relevant External Links for CLPSL2 Gene

HapMap Linkage Disequilibrium report
CLPSL2

No data available for Structural Variations from Database of Genomic Variants (DGV) for CLPSL2 Gene

Disorders for CLPSL2 Gene

No disorders were found for CLPSL2 Gene.

No data available for UniProtKB/Swiss-Prot for CLPSL2 Gene

Publications for CLPSL2 Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4
  2. Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PMID: 15340161) Zhang Z. … Henzel W.J. (Protein Sci. 2004) 3 4
  3. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 4

Products for CLPSL2 Gene

Sources for CLPSL2 Gene

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