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Aliases for CLNS1AP1 Gene

Aliases for CLNS1AP1 Gene

  • Chloride Nucleotide-Sensitive Channel 1A Pseudogene 1 2 3 5
  • Chloride Channel, Nucleotide-Sensitive, 1A Pseudogene 1 2 3
  • Chloride Channel, Nucleotide-Sensitive, 1B 2 3
  • CLNS1B 3
  • ICln 3

External Ids for CLNS1AP1 Gene

Previous HGNC Symbols for CLNS1AP1 Gene

  • CLNS1B

Previous GeneCards Identifiers for CLNS1AP1 Gene

  • GC06M054350

Summaries for CLNS1AP1 Gene

GeneCards Summary for CLNS1AP1 Gene

CLNS1AP1 (Chloride Nucleotide-Sensitive Channel 1A Pseudogene 1) is a Pseudogene.

Gene Wiki entry for CLNS1AP1 Gene

Additional gene information for CLNS1AP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLNS1AP1 Gene

Genomics for CLNS1AP1 Gene

Regulatory Elements for CLNS1AP1 Gene

Enhancers for CLNS1AP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H054490 0.8 Ensembl ENCODE 0.4 -6.3 -6311 3 JUND FOS EP300 MAFK ENSG00000261116 CLNS1AP1 GC06P054501
GH06H054419 0.9 Ensembl ENCODE 0.2 +65.8 65790 1 ZBTB21 JUN MAX CEBPB EP300 ZNF507 JUND STAT3 FOS MAFK GC06P054387 CLNS1AP1
GH06H054431 0.4 ENCODE 0.2 +54.3 54314 0 RUNX3 SPI1 ENSG00000261116 GC06P054387 CLNS1AP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CLNS1AP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CLNS1AP1 Gene

Chromosome:
6
Start:
54,484,499 bp from pter
End:
54,485,853 bp from pter
Size:
1,355 bases
Orientation:
Minus strand

Genomic View for CLNS1AP1 Gene

Genes around CLNS1AP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLNS1AP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLNS1AP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLNS1AP1 Gene

Proteins for CLNS1AP1 Gene

Post-translational modifications for CLNS1AP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLNS1AP1 Gene

Domains & Families for CLNS1AP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CLNS1AP1 Gene

Function for CLNS1AP1 Gene

Phenotypes From GWAS Catalog for CLNS1AP1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for CLNS1AP1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLNS1AP1 Gene

Localization for CLNS1AP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CLNS1AP1 Gene

Pathways & Interactions for CLNS1AP1 Gene

SuperPathways for CLNS1AP1 Gene

No Data Available

Interacting Proteins for CLNS1AP1 Gene

Gene Ontology (GO) - Biological Process for CLNS1AP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CLNS1AP1 Gene

Drugs & Compounds for CLNS1AP1 Gene

(2) Additional Compounds for CLNS1AP1 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with CLNS1AP1: view

Transcripts for CLNS1AP1 Gene

mRNA/cDNA for CLNS1AP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for CLNS1AP1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CLNS1AP1 Gene

No ASD Table

Relevant External Links for CLNS1AP1 Gene

GeneLoc Exon Structure for
CLNS1AP1
ECgene alternative splicing isoforms for
CLNS1AP1

Expression for CLNS1AP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CLNS1AP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CLNS1AP1 Gene:

CLNS1AP1
genes like me logo Genes that share expression patterns with CLNS1AP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLNS1AP1 Gene

Orthologs for CLNS1AP1 Gene

Evolution for CLNS1AP1 Gene

ENSEMBL:
Gene Tree for CLNS1AP1 (if available)
TreeFam:
Gene Tree for CLNS1AP1 (if available)

No data available for Orthologs for CLNS1AP1 Gene

Paralogs for CLNS1AP1 Gene

No data available for Paralogs for CLNS1AP1 Gene

Variants for CLNS1AP1 Gene

Relevant External Links for CLNS1AP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLNS1AP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CLNS1AP1 Gene

Disorders for CLNS1AP1 Gene

No disorders were found for CLNS1AP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CLNS1AP1 Gene

Publications for CLNS1AP1 Gene

  1. Characterization of the human gene coding for the swelling-dependent chloride channel ICln at position 11q13.5-14.1 (CLNS1A) and further characterization of the chromosome 6 (CLNS1B) localization. (PMID: 9524223) Nagl UO … Paulmichl M (Gene 1998) 2 3 60
  2. Chromosomal localization of the genes (CLNS1A and CLNS1B) coding for the swelling-dependent chloride channel ICln. (PMID: 8975725) Nagl UO … Paulmichl M (Genomics 1996) 2 3 60
  3. Functional reconstitution of ICln in lipid bilayers. (PMID: 10864003) Fürst J … Paulmichl M (Pflugers Archiv : European journal of physiology 2000) 22 60
  4. Partial structure, chromosome localization, and expression of the mouse Icln gene. (PMID: 9073507) Wickman K … Clapham DE (Genomics 1997) 22 60
  5. ICln, a chloride channel cloned from kidney cells, is activated during regulatory volume decrease. (PMID: 9027725) Laich A … Paulmichl M (Kidney international 1997) 22 60

Products for CLNS1AP1 Gene

Sources for CLNS1AP1 Gene

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