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Aliases for CLK2P1 Gene

Aliases for CLK2P1 Gene

  • CDC Like Kinase 2, Pseudogene 1 2 3 5
  • CDC-Like Kinase 2, Pseudogene 2 3
  • CDC-Like Kinase 2, Pseudogene 1 2
  • CLK2P 3

External Ids for CLK2P1 Gene

Previous HGNC Symbols for CLK2P1 Gene

  • CLK2P

Summaries for CLK2P1 Gene

GeneCards Summary for CLK2P1 Gene

CLK2P1 (CDC Like Kinase 2, Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLK2P1 Gene

Genomics for CLK2P1 Gene

Regulatory Elements for CLK2P1 Gene

Enhancers for CLK2P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F022659 1 Ensembl ENCODE 5.8 +924.2 924245 5.8 HDGF ATF1 PKNOX1 ARNT YY1 ZNF766 GATA2 FOS CREB3 MEF2D LOC541472 TRA2A STEAP1B IL6 CLK2P1 ENSG00000225541 LOC401312
GH07F023595 0.6 ENCODE 0.4 -8.7 -8690 0.2 PKNOX1 TBL1XR1 PTRF BMI1 RFX5 YY1 ELK1 CBX5 SCRT2 ETV6 LOC105375187 CLK2P1
GH07F023596 0.2 Ensembl 0.4 -9.6 -9574 0.2 ZBTB40 LOC105375187 CLK2P1
GH07F023570 0.5 Ensembl ENCODE 0.3 +15.6 15576 0.5 CTCF ETV1 RAD21 ETS1 ZNF143 SMC3 DEK CHD2 ELK4 ZNF263 CCDC126 FAM221A LOC442517 CLK2P1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CLK2P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CLK2P1 Gene

Chromosome:
7
Start:
23,584,716 bp from pter
End:
23,586,527 bp from pter
Size:
1,812 bases
Orientation:
Minus strand

Genomic View for CLK2P1 Gene

Genes around CLK2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLK2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLK2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLK2P1 Gene

Proteins for CLK2P1 Gene

Post-translational modifications for CLK2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLK2P1 Gene

Domains & Families for CLK2P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CLK2P1 Gene

Function for CLK2P1 Gene

genes like me logo Genes that share phenotypes with CLK2P1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLK2P1 Gene

Localization for CLK2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CLK2P1 Gene

Pathways & Interactions for CLK2P1 Gene

SuperPathways for CLK2P1 Gene

No Data Available

Interacting Proteins for CLK2P1 Gene

Gene Ontology (GO) - Biological Process for CLK2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CLK2P1 Gene

Transcripts for CLK2P1 Gene

mRNA/cDNA for CLK2P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CLK2P1 Gene

No ASD Table

Relevant External Links for CLK2P1 Gene

GeneLoc Exon Structure for
CLK2P1
ECgene alternative splicing isoforms for
CLK2P1

Expression for CLK2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CLK2P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CLK2P1 Gene:

CLK2P1
genes like me logo Genes that share expression patterns with CLK2P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CLK2P1 Gene

Orthologs for CLK2P1 Gene

Evolution for CLK2P1 Gene

ENSEMBL:
Gene Tree for CLK2P1 (if available)
TreeFam:
Gene Tree for CLK2P1 (if available)

No data available for Orthologs for CLK2P1 Gene

Paralogs for CLK2P1 Gene

No data available for Paralogs for CLK2P1 Gene

Variants for CLK2P1 Gene

Sequence variations from dbSNP and Humsavar for CLK2P1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10253671 -- 23,584,866(+) GAATA(A/G)CATTA nc-transcript-variant
rs10258020 -- 23,586,221(+) CTCGC(C/T)GGCGC nc-transcript-variant, downstream-variant-500B
rs111540643 -- 23,585,029(+) CTGCT(A/C)TAAAA nc-transcript-variant
rs112981379 -- 23,587,764(+) GATGG(G/T)GTTTC intron-variant, upstream-variant-2KB
rs113649464 -- 23,586,258(+) CCAGG(A/C)ACGGC nc-transcript-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for CLK2P1 Gene

Variant ID Type Subtype PubMed ID
nsv7393 OTHER inversion 18451855
nsv981440 CNV duplication 23825009

Relevant External Links for CLK2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLK2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CLK2P1 Gene

Disorders for CLK2P1 Gene

Relevant External Links for CLK2P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CLK2P1

No disorders were found for CLK2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLK2P1 Gene

Publications for CLK2P1 Gene

  1. Chromosomal mapping of three human LAMMER protein-kinase-encoding genes. (PMID: 9856501) Talmadge C.B. … Rabinow L. (Hum. Genet. 1998) 2 3 64
  2. Characterization by cDNA cloning of two new human protein kinases. Evidence by sequence comparison of a new family of mammalian protein kinases. (PMID: 7990150) Hanes J.J. … Scheit K.H. (J. Mol. Biol. 1994) 2 3 64
  3. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CLK2P1 Gene

Sources for CLK2P1 Gene

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