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Aliases for CLK2P1 Gene

Aliases for CLK2P1 Gene

  • CDC Like Kinase 2, Pseudogene 1 2 3 5
  • CDC-Like Kinase 2, Pseudogene 2 3
  • CDC-Like Kinase 2, Pseudogene 1 2
  • CLK2P 3

External Ids for CLK2P1 Gene

Previous HGNC Symbols for CLK2P1 Gene

  • CLK2P

Summaries for CLK2P1 Gene

GeneCards Summary for CLK2P1 Gene

CLK2P1 (CDC Like Kinase 2, Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLK2P1 Gene

Genomics for CLK2P1 Gene

Regulatory Elements for CLK2P1 Gene

Enhancers for CLK2P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G022659 1.5 Ensembl ENCODE dbSUPER 5.8 +924.0 924004 5.3 HDGF ATF1 PKNOX1 ARNT YY1 ZNF766 GATA2 FOS CAVIN1 ZNF592 LOC541472 STEAP1B IL6 CLK2P1 ENSG00000225541 LOC401312
GH07G023595 1 ENCODE 0.4 -8.7 -8690 0.2 PKNOX1 YY1 ZNF766 CBX5 ELK1 FOS CAVIN1 JUNB TBX21 ZNF592 LOC105375187 CLK2P1
GH07G023570 1 Ensembl ENCODE 0.4 +15.7 15661 0.3 CTCF PKNOX1 RB1 ETV1 RAD21 ETS1 ZNF143 SMC3 ZNF207 DEK CCDC126 FAM221A LOC442517 CLK2P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CLK2P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CLK2P1 Gene

Chromosome:
7
Start:
23,584,716 bp from pter
End:
23,586,527 bp from pter
Size:
1,812 bases
Orientation:
Minus strand

Genomic View for CLK2P1 Gene

Genes around CLK2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLK2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLK2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLK2P1 Gene

Proteins for CLK2P1 Gene

Post-translational modifications for CLK2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLK2P1 Gene

Domains & Families for CLK2P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CLK2P1 Gene

Function for CLK2P1 Gene

genes like me logo Genes that share phenotypes with CLK2P1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLK2P1 Gene

Localization for CLK2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CLK2P1 Gene

Pathways & Interactions for CLK2P1 Gene

SuperPathways for CLK2P1 Gene

No Data Available

Interacting Proteins for CLK2P1 Gene

Gene Ontology (GO) - Biological Process for CLK2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CLK2P1 Gene

Drugs & Compounds for CLK2P1 Gene

No Compound Related Data Available

Transcripts for CLK2P1 Gene

mRNA/cDNA for CLK2P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CLK2P1 Gene

No ASD Table

Relevant External Links for CLK2P1 Gene

GeneLoc Exon Structure for
CLK2P1
ECgene alternative splicing isoforms for
CLK2P1

Expression for CLK2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CLK2P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CLK2P1 Gene:

CLK2P1
genes like me logo Genes that share expression patterns with CLK2P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLK2P1 Gene

Orthologs for CLK2P1 Gene

Evolution for CLK2P1 Gene

ENSEMBL:
Gene Tree for CLK2P1 (if available)
TreeFam:
Gene Tree for CLK2P1 (if available)

No data available for Orthologs for CLK2P1 Gene

Paralogs for CLK2P1 Gene

No data available for Paralogs for CLK2P1 Gene

Variants for CLK2P1 Gene

Sequence variations from dbSNP and Humsavar for CLK2P1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000772697 -- 23,586,906(+) TGCAA(A/G)CAATA intron-variant, upstream-variant-2KB
rs1004856879 -- 23,588,322(+) TCCAA(A/T)CTTCA intron-variant, upstream-variant-2KB
rs1004887892 -- 23,587,991(+) CGTGA(A/G)TCACC intron-variant, upstream-variant-2KB
rs1005716947 -- 23,588,483(+) GCTGA(A/G)CATGG intron-variant, upstream-variant-2KB
rs1005748111 -- 23,586,447(+) GCGAT(A/G)AAGTG nc-transcript-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for CLK2P1 Gene

Variant ID Type Subtype PubMed ID
nsv7393 OTHER inversion 18451855
nsv981440 CNV duplication 23825009

Relevant External Links for CLK2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLK2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CLK2P1 Gene

Disorders for CLK2P1 Gene

Relevant External Links for CLK2P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CLK2P1

No disorders were found for CLK2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLK2P1 Gene

Publications for CLK2P1 Gene

  1. Chromosomal mapping of three human LAMMER protein-kinase-encoding genes. (PMID: 9856501) Talmadge C.B. … Rabinow L. (Hum. Genet. 1998) 2 3 64
  2. Characterization by cDNA cloning of two new human protein kinases. Evidence by sequence comparison of a new family of mammalian protein kinases. (PMID: 7990150) Hanes J.J. … Scheit K.H. (J. Mol. Biol. 1994) 2 3 64
  3. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CLK2P1 Gene

Sources for CLK2P1 Gene

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