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Aliases for CLIP1-AS1 Gene

Subcategory (RNA class) for CLIP1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CLIP1-AS1 Gene

  • CLIP1 Antisense RNA 1 2 3 5

External Ids for CLIP1-AS1 Gene

Previous GeneCards Identifiers for CLIP1-AS1 Gene

  • GC12P122881

Summaries for CLIP1-AS1 Gene

GeneCards Summary for CLIP1-AS1 Gene

CLIP1-AS1 (CLIP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLIP1-AS1 Gene

Genomics for CLIP1-AS1 Gene

Regulatory Elements for CLIP1-AS1 Gene

Enhancers for CLIP1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G122646 1.5 FANTOM5 Ensembl ENCODE 4.1 +251.5 251494 1.7 HDAC1 PKNOX1 TBL1XR1 SIN3A BMI1 CBX5 FOS RELB ETV6 IKZF2 HCAR2 HCAR3 CCDC150P1 ZCCHC8 CLIP1-AS1 VPS37B CLIP1 RSRC2 ENSG00000274191 ENSG00000256249
GH12G122651 0.4 ENCODE 4.2 +255.3 255307 0.2 ZBTB33 KLF4 CLIP1-AS1 ENSG00000274191 ENSG00000256249
GH12G122394 1.3 Ensembl ENCODE dbSUPER 0.7 -0.1 -126 1.3 ATF1 ZSCAN4 INSM2 FEZF1 YY1 GATA2 ZNF366 FOS CREM ZNF263 CLIP1 CLIP1-AS1 RPL21P1
GH12G122398 1.7 Ensembl ENCODE dbSUPER 0.4 +5.8 5828 6.0 CREB3L1 FEZF1 DMAP1 YY1 SP3 TBX21 SSRP1 ZNF610 GLIS1 NR2C1 PSMD9 ZCCHC8 KNTC1 CLIP1 ENSG00000252192 LINC01089 C12orf65 CCDC62 MLXIP CLIP1-AS1
GH12G122404 1.6 Ensembl ENCODE dbSUPER 0.4 +11.0 10952 3.1 FOXA2 MLX ARID4B SIN3A DMAP1 YY1 FOS KLF13 SP5 TBX21 SETD1B CLIP1 ENSG00000252192 CCDC62 CLIP1-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CLIP1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CLIP1-AS1 Gene

Chromosome:
12
Start:
122,395,542 bp from pter
End:
122,400,857 bp from pter
Size:
5,316 bases
Orientation:
Plus strand

Genomic View for CLIP1-AS1 Gene

Genes around CLIP1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLIP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLIP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLIP1-AS1 Gene

Proteins for CLIP1-AS1 Gene

Post-translational modifications for CLIP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLIP1-AS1 Gene

Domains & Families for CLIP1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CLIP1-AS1 Gene

Function for CLIP1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLIP1-AS1 Gene

Localization for CLIP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CLIP1-AS1 Gene

Pathways & Interactions for CLIP1-AS1 Gene

SuperPathways for CLIP1-AS1 Gene

No Data Available

Interacting Proteins for CLIP1-AS1 Gene

Gene Ontology (GO) - Biological Process for CLIP1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CLIP1-AS1 Gene

Drugs & Compounds for CLIP1-AS1 Gene

No Compound Related Data Available

Transcripts for CLIP1-AS1 Gene

mRNA/cDNA for CLIP1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CLIP1-AS1 Gene

No ASD Table

Relevant External Links for CLIP1-AS1 Gene

GeneLoc Exon Structure for
CLIP1-AS1
ECgene alternative splicing isoforms for
CLIP1-AS1

Expression for CLIP1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CLIP1-AS1 Gene

genes like me logo Genes that share expression patterns with CLIP1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLIP1-AS1 Gene

Orthologs for CLIP1-AS1 Gene

Evolution for CLIP1-AS1 Gene

ENSEMBL:
Gene Tree for CLIP1-AS1 (if available)
TreeFam:
Gene Tree for CLIP1-AS1 (if available)

No data available for Orthologs for CLIP1-AS1 Gene

Paralogs for CLIP1-AS1 Gene

No data available for Paralogs for CLIP1-AS1 Gene

Variants for CLIP1-AS1 Gene

Sequence variations from dbSNP and Humsavar for CLIP1-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000113787 -- 122,393,868(+) GATCA(A/G)ACCAC intron-variant, upstream-variant-2KB
rs1000497707 -- 122,399,112(+) AAATG(C/T)CATGG intron-variant
rs1000619622 -- 122,396,430(+) ATTTT(A/G)TTATT intron-variant
rs1001326669 -- 122,399,807(+) GACTT(C/T)GGAGC intron-variant, nc-transcript-variant, utr-variant-5-prime
rs1001630493 -- 122,400,039(+) GTTAC(A/G)TAAGT intron-variant, utr-variant-5-prime

Relevant External Links for CLIP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLIP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CLIP1-AS1 Gene

Disorders for CLIP1-AS1 Gene

Relevant External Links for CLIP1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CLIP1-AS1

No disorders were found for CLIP1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLIP1-AS1 Gene

Publications for CLIP1-AS1 Gene

No publications were found for CLIP1-AS1 Gene.

Products for CLIP1-AS1 Gene

Sources for CLIP1-AS1 Gene

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