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Aliases for CLEC4GP1 Gene

Aliases for CLEC4GP1 Gene

  • C-Type Lectin Domain Family 4 Member G Pseudogene 1 2 3 5
  • C-Type Lectin Domain Family 4, Member G Pseudogene 1 2

External Ids for CLEC4GP1 Gene

Previous GeneCards Identifiers for CLEC4GP1 Gene

  • GC19P007759
  • GC19P007852
  • GC19P007522

Summaries for CLEC4GP1 Gene

GeneCards Summary for CLEC4GP1 Gene

CLEC4GP1 (C-Type Lectin Domain Family 4 Member G Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLEC4GP1 Gene

Genomics for CLEC4GP1 Gene

Regulatory Elements for CLEC4GP1 Gene

Enhancers for CLEC4GP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F007783 0.6 Ensembl ENCODE 16.9 -3.3 -3283 0.8 HDAC1 RAD21 RFX5 SCRT2 RCOR1 FOS CEBPB USF2 REST MAFF CLEC4GP1 GC19P007785 LOC105372263
GH19F007791 0.5 ENCODE 15 +4.9 4887 1.6 ATF1 PKNOX1 L3MBTL2 HINFP RNF2 NRF1 REST ARID1B GATA3 CTBP1 CLEC4GP1 TRAPPC5 MCEMP1 CD209 RPL21P129 CLEC4G CAMSAP3 EXOSC3P2
GH19F007779 0.6 ENCODE 13.1 -7.6 -7606 1.2 PKNOX1 NR2F1 MNT THRB MBD2 GATA3 HNF1A NR2F6 ZNF652 TCF7L2 CLEC4GP1 RPL21P129 CD209 CLEC4G FCER2 TRAPPC5 MCEMP1 GC19P007785 LOC105372263
GH19F007772 1.2 Ensembl ENCODE 9.5 -14.4 -14384 1.4 PKNOX1 BMI1 CEBPG GATA3 EED NR2F6 ZNF600 TRIM24 CREM ZNF687 RPL21P129 CD209 FCER2 CLEC4G CLEC4GP1 LOC105372263 GC19P007785
GH19F007787 0.9 ENCODE 0.8 -0.1 -95 0.2 SOX13 TFAP4 CLEC4GP1 GC19P007785
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CLEC4GP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CLEC4GP1 Gene

Chromosome:
19
Start:
7,787,484 bp from pter
End:
7,791,012 bp from pter
Size:
3,529 bases
Orientation:
Plus strand

Genomic View for CLEC4GP1 Gene

Genes around CLEC4GP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLEC4GP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLEC4GP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLEC4GP1 Gene

Proteins for CLEC4GP1 Gene

Post-translational modifications for CLEC4GP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLEC4GP1 Gene

Domains & Families for CLEC4GP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CLEC4GP1 Gene

Function for CLEC4GP1 Gene

Phenotypes for CLEC4GP1 Gene

GenomeRNAi human phenotypes for CLEC4GP1:
genes like me logo Genes that share phenotypes with CLEC4GP1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLEC4GP1 Gene

Localization for CLEC4GP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CLEC4GP1 Gene

Pathways & Interactions for CLEC4GP1 Gene

SuperPathways for CLEC4GP1 Gene

No Data Available

Interacting Proteins for CLEC4GP1 Gene

Gene Ontology (GO) - Biological Process for CLEC4GP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CLEC4GP1 Gene

Transcripts for CLEC4GP1 Gene

mRNA/cDNA for CLEC4GP1 Gene

(5) Additional mRNA sequences :
(14) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CLEC4GP1 Gene

C-type lectin domain family 4, member G pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CLEC4GP1 Gene

No ASD Table

Relevant External Links for CLEC4GP1 Gene

GeneLoc Exon Structure for
CLEC4GP1
ECgene alternative splicing isoforms for
CLEC4GP1

Expression for CLEC4GP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CLEC4GP1 Gene

mRNA differential expression in normal tissues according to GTEx for CLEC4GP1 Gene

This gene is overexpressed in Brain - Cerebellum (x13.1), Brain - Cerebellar Hemisphere (x12.8), and Adrenal Gland (x7.6).

NURSA nuclear receptor signaling pathways regulating expression of CLEC4GP1 Gene:

CLEC4GP1

SOURCE GeneReport for Unigene cluster for CLEC4GP1 Gene:

Hs.568222
genes like me logo Genes that share expression patterns with CLEC4GP1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CLEC4GP1 Gene

Orthologs for CLEC4GP1 Gene

Evolution for CLEC4GP1 Gene

ENSEMBL:
Gene Tree for CLEC4GP1 (if available)
TreeFam:
Gene Tree for CLEC4GP1 (if available)

No data available for Orthologs for CLEC4GP1 Gene

Paralogs for CLEC4GP1 Gene

No data available for Paralogs for CLEC4GP1 Gene

Variants for CLEC4GP1 Gene

Sequence variations from dbSNP and Humsavar for CLEC4GP1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10418839 -- 7,790,895(+) GTCAG(A/G)CAACT nc-transcript-variant
rs111440483 -- 7,787,457(+) CAAGA(A/G)AATGA upstream-variant-2KB
rs111681389 -- 7,785,994(+) CACCT(A/G)GCCTC upstream-variant-2KB
rs111990245 -- 7,786,294(+) CAGCT(G/T)CCCGT upstream-variant-2KB
rs112084779 -- 7,789,779(+) TGACA(C/T)TAGTG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for CLEC4GP1 Gene

Variant ID Type Subtype PubMed ID
esv2751809 CNV gain 17911159
nsv1058579 CNV gain 25217958
nsv1060887 CNV gain 25217958
nsv833732 CNV gain 17160897

Relevant External Links for CLEC4GP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLEC4GP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CLEC4GP1 Gene

Disorders for CLEC4GP1 Gene

Relevant External Links for CLEC4GP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CLEC4GP1

No disorders were found for CLEC4GP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLEC4GP1 Gene

Publications for CLEC4GP1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CLEC4GP1 Gene

Sources for CLEC4GP1 Gene

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