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Aliases for CLEC4E Gene

Aliases for CLEC4E Gene

  • C-Type Lectin Domain Family 4 Member E 2 3 5
  • Macrophage-Inducible C-Type Lectin 2 3 4
  • C-Type (Calcium Dependent, Carbohydrate-Recognition Domain) Lectin, Superfamily Member 9 2 3
  • C-Type Lectin Superfamily Member 9 3 4
  • CLECSF9 3 4
  • MINCLE 3 4
  • C-Type Lectin Domain Family 4, Member E 2

External Ids for CLEC4E Gene

Previous HGNC Symbols for CLEC4E Gene

  • CLECSF9

Previous GeneCards Identifiers for CLEC4E Gene

  • GC12M008578
  • GC12M008685
  • GC12M008468

Summaries for CLEC4E Gene

Entrez Gene Summary for CLEC4E Gene

  • This gene encodes a member of the C-type lectin/C-type lectin-like domain (CTL/CTLD) superfamily. Members of this family share a common protein fold and have diverse functions, such as cell adhesion, cell-cell signalling, glycoprotein turnover, and roles in inflammation and immune response. The encoded type II transmembrane protein is a downstream target of CCAAT/enhancer binding protein (C/EBP), beta (CEBPB) and may play a role in inflammation. Alternative splice variants have been described but their full-length sequence has not been determined. This gene is closely linked to other CTL/CTLD superfamily members on chromosome 12p13 in the natural killer gene complex region. [provided by RefSeq, Jul 2008]

GeneCards Summary for CLEC4E Gene

CLEC4E (C-Type Lectin Domain Family 4 Member E) is a Protein Coding gene. Diseases associated with CLEC4E include Common Wart. Among its related pathways are Defective C1GALT1C1 causes Tn polyagglutination syndrome (TNPS) and Toll-Like receptor Signaling Pathways. GO annotations related to this gene include receptor activity and carbohydrate binding. An important paralog of this gene is CLEC4C.

UniProtKB/Swiss-Prot for CLEC4E Gene

  • C-type lectin that functions as cell-surface receptor for a wide variety of ligands such as damaged cells, fungi and mycobacteria. Plays a role in the recognition of pathogenic fungi, such as Candida albicans. The detection of mycobacteria is via trehalose 6,6-dimycolate (TDM), a cell wall glycolipid. Specifically recognizes alpha-mannose residues on pathogenic fungi of the genus Malassezia. Recognizes also SAP130, a nuclear protein, that is released by dead or dying cells. Transduces signals through an ITAM-containing adapter protein, Fc receptor gamma chain /FCER1G. Induces secretion of inflammatory cytokines through a pathway that depends on SYK, CARD9 and NF-kappa-B.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLEC4E Gene

Genomics for CLEC4E Gene

Regulatory Elements for CLEC4E Gene

Enhancers for CLEC4E Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G008492 1.3 FANTOM5 Ensembl ENCODE 24.6 +47.8 47826 1.5 PKNOX1 TBL1XR1 ASH2L BACH1 CHD4 BMI1 RELA CBX5 POLR2A EED CLEC4E CLEC4D CLEC6A CLEC4A LINC00937 NECAP1 KLRG1 C3AR1 M6PR FOXJ2
GH12G008617 1.4 FANTOM5 Ensembl ENCODE 17.7 -77.9 -77931 2.7 PKNOX1 BMI1 ZBTB40 GTF3C2 GATA2 FOS RELB IKZF2 CEBPB JUNB CLEC4E LOC642846 DDX12P M6PR LINC00612 ENSG00000255753 A2ML1 A2ML1-AS2 CLEC6A CLEC4A
GH12G008539 0.8 Ensembl 19.5 +0.4 363 2.8 PKNOX1 CHD7 ZNF121 GATA3 ZFHX2 ZNF366 POLR2A SCRT2 ZBTB20 SCRT1 CLEC4E LINC00937 GC12P008530
GH12G008610 1.2 FANTOM5 ENCODE 11.5 -70.3 -70294 1.3 HDGF TBP PKNOX1 TBL1XR1 ZSCAN4 WRNIP1 SIN3A BMI1 TCF12 ZNF766 CLEC4E AICDA ENSG00000252727
GH12G008643 1.1 Ensembl ENCODE 10.9 -104.1 -104146 2.4 TBP PKNOX1 TBL1XR1 BACH1 ASH2L BMI1 RELA ARID3A ELK1 POLR2A CLEC4E A2ML1 A2ML1-AS2 RNU6-275P RIMKLB HADHAP2 MFAP5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CLEC4E on UCSC Golden Path with GeneCards custom track

Genomic Location for CLEC4E Gene

Chromosome:
12
Start:
8,533,305 bp from pter
End:
8,540,963 bp from pter
Size:
7,659 bases
Orientation:
Minus strand

Genomic View for CLEC4E Gene

Genes around CLEC4E on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLEC4E Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLEC4E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLEC4E Gene

Proteins for CLEC4E Gene

  • Protein details for CLEC4E Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9ULY5-CLC4E_HUMAN
    Recommended name:
    C-type lectin domain family 4 member E
    Protein Accession:
    Q9ULY5
    Secondary Accessions:
    • B2R6Q6

    Protein attributes for CLEC4E Gene

    Size:
    219 amino acids
    Molecular mass:
    25073 Da
    Quaternary structure:
    • Monomer. Homodimer.

    Three dimensional structures from OCA and Proteopedia for CLEC4E Gene

neXtProt entry for CLEC4E Gene

Post-translational modifications for CLEC4E Gene

  • Glycosylation at posLast=6262 and Asn107
  • Modification sites at PhosphoSitePlus

Other Protein References for CLEC4E Gene

Protein Products

  • Abcam proteins for CLEC4E

No data available for DME Specific Peptides for CLEC4E Gene

Domains & Families for CLEC4E Gene

Gene Families for CLEC4E Gene

Suggested Antigen Peptide Sequences for CLEC4E Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CLEC4E: view

No data available for UniProtKB/Swiss-Prot for CLEC4E Gene

Function for CLEC4E Gene

Molecular function for CLEC4E Gene

UniProtKB/Swiss-Prot Function:
C-type lectin that functions as cell-surface receptor for a wide variety of ligands such as damaged cells, fungi and mycobacteria. Plays a role in the recognition of pathogenic fungi, such as Candida albicans. The detection of mycobacteria is via trehalose 6,6-dimycolate (TDM), a cell wall glycolipid. Specifically recognizes alpha-mannose residues on pathogenic fungi of the genus Malassezia. Recognizes also SAP130, a nuclear protein, that is released by dead or dying cells. Transduces signals through an ITAM-containing adapter protein, Fc receptor gamma chain /FCER1G. Induces secretion of inflammatory cytokines through a pathway that depends on SYK, CARD9 and NF-kappa-B.

Gene Ontology (GO) - Molecular Function for CLEC4E Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004872 receptor activity IEA --
GO:0030246 carbohydrate binding TAS,IEA --
genes like me logo Genes that share ontologies with CLEC4E: view
genes like me logo Genes that share phenotypes with CLEC4E: view

Animal Models for CLEC4E Gene

MGI Knock Outs for CLEC4E:

Animal Model Products

  • Taconic Biosciences Mouse Models for CLEC4E

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CLEC4E Gene

Localization for CLEC4E Gene

Subcellular locations from UniProtKB/Swiss-Prot for CLEC4E Gene

Membrane; Single-pass type II membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CLEC4E gene
Compartment Confidence
plasma membrane 5
extracellular 3
cytosol 2

Gene Ontology (GO) - Cellular Components for CLEC4E Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CLEC4E: view

Pathways & Interactions for CLEC4E Gene

genes like me logo Genes that share pathways with CLEC4E: view

Pathways by source for CLEC4E Gene

1 KEGG pathway for CLEC4E Gene

Interacting Proteins for CLEC4E Gene

Gene Ontology (GO) - Biological Process for CLEC4E Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002223 stimulatory C-type lectin receptor signaling pathway TAS --
GO:0002292 T cell differentiation involved in immune response IEA --
GO:0002376 immune system process IEA --
GO:0006955 immune response IEA --
GO:0038094 Fc-gamma receptor signaling pathway IEA --
genes like me logo Genes that share ontologies with CLEC4E: view

No data available for SIGNOR curated interactions for CLEC4E Gene

Drugs & Compounds for CLEC4E Gene

No Compound Related Data Available

Transcripts for CLEC4E Gene

Unigene Clusters for CLEC4E Gene

C-type lectin domain family 4, member E:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CLEC4E Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b · 3c · 3d ^ 4 ^ 5 ^ 6a · 6b · 6c
SP1: - - -
SP2: - -
SP3: - - -
SP4: - - -
SP5:

Relevant External Links for CLEC4E Gene

GeneLoc Exon Structure for
CLEC4E
ECgene alternative splicing isoforms for
CLEC4E

Expression for CLEC4E Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CLEC4E Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CLEC4E Gene

This gene is overexpressed in Whole Blood (x41.9).

NURSA nuclear receptor signaling pathways regulating expression of CLEC4E Gene:

CLEC4E

SOURCE GeneReport for Unigene cluster for CLEC4E Gene:

Hs.236516

Evidence on tissue expression from TISSUES for CLEC4E Gene

  • Kidney(4.1)
  • Spleen(2.4)
genes like me logo Genes that share expression patterns with CLEC4E: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLEC4E Gene

Orthologs for CLEC4E Gene

This gene was present in the common ancestor of chordates.

Orthologs for CLEC4E Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CLEC4E 34 35
  • 99.54 (n)
cow
(Bos Taurus)
Mammalia CLEC4E 34 35
  • 84.47 (n)
dog
(Canis familiaris)
Mammalia CLEC4E 34 35
  • 82.94 (n)
rat
(Rattus norvegicus)
Mammalia Clec4e 34
  • 79.91 (n)
mouse
(Mus musculus)
Mammalia Clec4e 34 16 35
  • 79.5 (n)
oppossum
(Monodelphis domestica)
Mammalia CLEC4E 35
  • 59 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CLEC4E 35
  • 42 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii si:ch211-154o6.6 34
  • 53.08 (n)
Species where no ortholog for CLEC4E was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CLEC4E Gene

ENSEMBL:
Gene Tree for CLEC4E (if available)
TreeFam:
Gene Tree for CLEC4E (if available)

Paralogs for CLEC4E Gene

(16) SIMAP similar genes for CLEC4E Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with CLEC4E: view

Variants for CLEC4E Gene

Sequence variations from dbSNP and Humsavar for CLEC4E Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000660004 -- 8,534,389(+) GCAAA(C/T)GTAGC downstream-variant-500B, utr-variant-3-prime
rs1001076714 -- 8,539,920(+) ATAAG(A/G)ACATT intron-variant, reference, missense
rs1001168363 -- 8,540,273(+) TTTTT(C/T)CTTTC intron-variant
rs1001915164 -- 8,535,685(+) TCCAC(A/G)ATAAA intron-variant
rs1002050779 -- 8,535,437(+) TCAGG(A/T)AGAAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CLEC4E Gene

Variant ID Type Subtype PubMed ID
dgv1362n100 CNV gain 25217958
nsv1051530 CNV gain 25217958
nsv557342 CNV loss 21841781

Variation tolerance for CLEC4E Gene

Residual Variation Intolerance Score: 67.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.28; 25.47% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CLEC4E Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLEC4E

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CLEC4E Gene

Disorders for CLEC4E Gene

MalaCards: The human disease database

(1) MalaCards diseases for CLEC4E Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
common wart
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CLEC4E

Human Genome Epidemiology (HuGE) Navigator
CLEC4E
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CLEC4E
genes like me logo Genes that share disorders with CLEC4E: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CLEC4E Gene

Publications for CLEC4E Gene

  1. Human and mouse macrophage-inducible C-type lectin (Mincle) bind Candida albicans. (PMID: 18509109) Bugarcic A. … Blanchard H. (Glycobiology 2008) 3 4 22 64
  2. A novel LPS-inducible C-type lectin is a transcriptional target of NF-IL6 in macrophages. (PMID: 10528209) Matsumoto M. … Akira S. (J. Immunol. 1999) 2 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4 64
  5. Human gingiva transcriptome during wound healing. (PMID: 28005267) Wang Y. … Tatakis D.N. (J. Clin. Periodontol. 2017) 3 64

Products for CLEC4E Gene

Sources for CLEC4E Gene

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