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Aliases for CLEC4E Gene

Aliases for CLEC4E Gene

  • C-Type Lectin Domain Family 4, Member E 2 3
  • MINCLE 3 4 6
  • C-Type (Calcium Dependent, Carbohydrate-Recognition Domain) Lectin, Superfamily Member 9 2 3
  • Macrophage-Inducible C-Type Lectin 3 4
  • C-Type Lectin Superfamily Member 9 3 4
  • CLECSF9 3 4
  • C-Type Lectin Domain Family 4 Member E 3

External Ids for CLEC4E Gene

Previous HGNC Symbols for CLEC4E Gene

  • CLECSF9

Previous GeneCards Identifiers for CLEC4E Gene

  • GC12M008578
  • GC12M008685
  • GC12M008468

Summaries for CLEC4E Gene

Entrez Gene Summary for CLEC4E Gene

  • This gene encodes a member of the C-type lectin/C-type lectin-like domain (CTL/CTLD) superfamily. Members of this family share a common protein fold and have diverse functions, such as cell adhesion, cell-cell signalling, glycoprotein turnover, and roles in inflammation and immune response. The encoded type II transmembrane protein is a downstream target of CCAAT/enhancer binding protein (C/EBP), beta (CEBPB) and may play a role in inflammation. Alternative splice variants have been described but their full-length sequence has not been determined. This gene is closely linked to other CTL/CTLD superfamily members on chromosome 12p13 in the natural killer gene complex region. [provided by RefSeq, Jul 2008]

GeneCards Summary for CLEC4E Gene

CLEC4E (C-Type Lectin Domain Family 4, Member E) is a Protein Coding gene. Diseases associated with CLEC4E include chromoblastomycosis. Among its related pathways are NOD-like Receptor Signaling Pathways and Tuberculosis. GO annotations related to this gene include receptor activity and carbohydrate binding. An important paralog of this gene is CLEC4D.

UniProtKB/Swiss-Prot for CLEC4E Gene

  • C-type lectin that functions as cell-surface receptor for a wide variety of ligands such as damaged cells, fungi and mycobacteria. Plays a role in the recognition of pathogenic fungi, such as Candida albicans. The detection of mycobacteria is via trehalose 6,6-dimycolate (TDM), a cell wall glycolipid. Specifically recognizes alpha-mannose residues on pathogenic fungi of the genus Malassezia. Recognizes also SAP130, a nuclear protein, that is released by dead or dying cells. Transduces signals through an ITAM-containing adapter protein, Fc receptor gamma chain /FCER1G. Induces secretion of inflammatory cytokines through a pathway that depends on SYK, CARD9 and NF-kappa-B.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLEC4E Gene

Genomics for CLEC4E Gene

Regulatory Elements for CLEC4E Gene

Genomic Location for CLEC4E Gene

Start:
8,533,305 bp from pter
End:
8,540,963 bp from pter
Size:
7,659 bases
Orientation:
Minus strand

Genomic View for CLEC4E Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CLEC4E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLEC4E Gene

Proteins for CLEC4E Gene

  • Protein details for CLEC4E Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9ULY5-CLC4E_HUMAN
    Recommended name:
    C-type lectin domain family 4 member E
    Protein Accession:
    Q9ULY5
    Secondary Accessions:
    • B2R6Q6

    Protein attributes for CLEC4E Gene

    Size:
    219 amino acids
    Molecular mass:
    25073 Da
    Quaternary structure:
    • Monomer. Homodimer.

    Three dimensional structures from OCA and Proteopedia for CLEC4E Gene

neXtProt entry for CLEC4E Gene

Proteomics data for CLEC4E Gene at MOPED

Post-translational modifications for CLEC4E Gene

  • Glycosylation at Asn62 and Asn107
  • Modification sites at PhosphoSitePlus

Other Protein References for CLEC4E Gene

No data available for DME Specific Peptides for CLEC4E Gene

Domains for CLEC4E Gene

Gene Families for CLEC4E Gene

HGNC:
  • CLEC :C-type lectin domain containing

Protein Domains for CLEC4E Gene

Suggested Antigen Peptide Sequences for CLEC4E Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9ULY5

UniProtKB/Swiss-Prot:

CLC4E_HUMAN :
  • Q9ULY5
Domain:
  • Contains 1 C-type lectin domain.
genes like me logo Genes that share domains with CLEC4E: view

Function for CLEC4E Gene

Molecular function for CLEC4E Gene

UniProtKB/Swiss-Prot Function: C-type lectin that functions as cell-surface receptor for a wide variety of ligands such as damaged cells, fungi and mycobacteria. Plays a role in the recognition of pathogenic fungi, such as Candida albicans. The detection of mycobacteria is via trehalose 6,6-dimycolate (TDM), a cell wall glycolipid. Specifically recognizes alpha-mannose residues on pathogenic fungi of the genus Malassezia. Recognizes also SAP130, a nuclear protein, that is released by dead or dying cells. Transduces signals through an ITAM-containing adapter protein, Fc receptor gamma chain /FCER1G. Induces secretion of inflammatory cytokines through a pathway that depends on SYK, CARD9 and NF-kappa-B.

Gene Ontology (GO) - Molecular Function for CLEC4E Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004872 receptor activity IEA --
GO:0005515 protein binding --
GO:0030246 carbohydrate binding IEA --
genes like me logo Genes that share ontologies with CLEC4E: view
genes like me logo Genes that share phenotypes with CLEC4E: view

Animal Models for CLEC4E Gene

MGI Knock Outs for CLEC4E:

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CLEC4E

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , miRNA , Transcription Factor Targeting and HOMER Transcription for CLEC4E Gene

Localization for CLEC4E Gene

Subcellular locations from UniProtKB/Swiss-Prot for CLEC4E Gene

Membrane; Single-pass type II membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CLEC4E Gene COMPARTMENTS Subcellular localization image for CLEC4E gene
Compartment Confidence
extracellular 3
plasma membrane 3
cytosol 1

Gene Ontology (GO) - Cellular Components for CLEC4E Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CLEC4E: view

Pathways for CLEC4E Gene

genes like me logo Genes that share pathways with CLEC4E: view

Pathways by source for CLEC4E Gene

1 KEGG pathway for CLEC4E Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Interacting Proteins for CLEC4E Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000299663%0d%0a9606.ENSP00000364898%0d%0a9606.ENSP00000289902%0d%0a
Selected Interacting proteins: ENSP00000299663 for CLEC4E Gene via STRING

Gene Ontology (GO) - Biological Process for CLEC4E Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002223 stimulatory C-type lectin receptor signaling pathway TAS --
GO:0006955 immune response --
GO:0045087 innate immune response TAS --
GO:0050715 positive regulation of cytokine secretion IEA --
genes like me logo Genes that share ontologies with CLEC4E: view

Transcripts for CLEC4E Gene

Unigene Clusters for CLEC4E Gene

C-type lectin domain family 4, member E:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CLEC4E

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CLEC4E Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b · 3c · 3d ^ 4 ^ 5 ^ 6a · 6b · 6c
SP1: - - -
SP2: - -
SP3: - - -
SP4: - - -
SP5:

Relevant External Links for CLEC4E Gene

GeneLoc Exon Structure for
CLEC4E
ECgene alternative splicing isoforms for
CLEC4E

Expression for CLEC4E Gene

mRNA expression in normal human tissues for CLEC4E Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CLEC4E Gene

This gene is overexpressed in Whole Blood (41.9).

SOURCE GeneReport for Unigene cluster for CLEC4E Gene Hs.236516

genes like me logo Genes that share expressions with CLEC4E: view

In Situ Assay Products

No data available for Protein expression and mRNA Expression by UniProt/SwissProt for CLEC4E Gene

Orthologs for CLEC4E Gene

This gene was present in the common ancestor of chordates.

Orthologs for CLEC4E Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CLEC4E 35
  • 99.54 (n)
  • 98.63 (a)
CLEC4E 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CLEC4E 35
  • 84.47 (n)
  • 75.24 (a)
CLEC4E 36
  • 73 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CLEC4E 35
  • 82.94 (n)
  • 72.99 (a)
CLEC4E 36
  • 69 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Clec4e 35
  • 79.5 (n)
  • 67.14 (a)
Clec4e 16
Clec4e 36
  • 67 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CLEC4E 36
  • 59 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CLEC4E 36
  • 42 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Clec4e 35
  • 79.91 (n)
  • 68.22 (a)
zebrafish
(Danio rerio)
Actinopterygii si:ch211-154o6.6 35
  • 53.08 (n)
  • 43.85 (a)
Species with no ortholog for CLEC4E:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CLEC4E Gene

ENSEMBL:
Gene Tree for CLEC4E (if available)
TreeFam:
Gene Tree for CLEC4E (if available)

Paralogs for CLEC4E Gene

Selected SIMAP similar genes for CLEC4E Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with CLEC4E: view

Variants for CLEC4E Gene

Sequence variations from dbSNP and Humsavar for CLEC4E Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs4242896 -- 8,536,403(+) GTATA(A/C/G)AAAAA intron-variant
rs4551822 -- 8,538,109(+) cagac(A/C/T)ggaaa intron-variant
rs4562874 -- 8,538,646(+) ctctc(A/G)tctct intron-variant
rs4620776 -- 8,540,737(+) GGAAG(A/G)AAAGG intron-variant
rs4883166 -- 8,541,599(+) TCAAT(C/T)TCCTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CLEC4E Gene

Variant ID Type Subtype PubMed ID
nsv898737 CNV Loss 21882294

Relevant External Links for CLEC4E Gene

HapMap Linkage Disequilibrium report
CLEC4E

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CLEC4E Gene

Disorders for CLEC4E Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for CLEC4E Gene including...

Search for CLEC4E Gene in MalaCards »

(1) University of Copenhagen DISEASES for CLEC4E Gene

Relevant External Links for CLEC4E

Human Genome Epidemiology (HuGE) Navigator
CLEC4E
genes like me logo Genes that share disorders with CLEC4E: view

No data available for UniProtKB/Swiss-Prot for CLEC4E Gene

Publications for CLEC4E Gene

  1. Human and mouse macrophage-inducible C-type lectin (Mincle) bind Candida albicans. (PMID: 18509109) Bugarcic A. … Blanchard H. (Glycobiology 2008) 3 4 23
  2. A novel LPS-inducible C-type lectin is a transcriptional target of NF-IL6 in macrophages. (PMID: 10528209) Matsumoto M. … Akira S. (J. Immunol. 1999) 2 3 4
  3. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for CLEC4E Gene

  • antibodies-online proteins for CLEC4E
  • antibodies-online antibodies for CLEC4E
  • antibodies-online kits for CLEC4E

Sources for CLEC4E Gene

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