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Aliases for CLEC3A Gene

Aliases for CLEC3A Gene

  • C-Type Lectin Domain Family 3 Member A 2 3 5
  • C-Type (Calcium Dependent, Carbohydrate-Recognition Domain) Lectin, Superfamily Member 1 (Cartilage-Derived) 2 3
  • C-Type Lectin Domain Family 3, Member A 2 3
  • CLECSF1 3 4
  • C-Type Lectin Superfamily Member 1 4
  • Cartilage-Derived C-Type Lectin 4

External Ids for CLEC3A Gene

Previous HGNC Symbols for CLEC3A Gene

  • CLECSF1

Previous GeneCards Identifiers for CLEC3A Gene

  • GC16P076614
  • GC16P063813

Summaries for CLEC3A Gene

GeneCards Summary for CLEC3A Gene

CLEC3A (C-Type Lectin Domain Family 3 Member A) is a Protein Coding gene. GO annotations related to this gene include carbohydrate binding. An important paralog of this gene is CLEC11A.

UniProtKB/Swiss-Prot for CLEC3A Gene

  • Promotes cell adhesion to laminin-332 and fibronectin.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLEC3A Gene

Genomics for CLEC3A Gene

Regulatory Elements for CLEC3A Gene

Enhancers for CLEC3A Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around CLEC3A on UCSC Golden Path with GeneCards custom track

Genomic Location for CLEC3A Gene

Chromosome:
16
Start:
78,022,515 bp from pter
End:
78,066,761 bp from pter
Size:
44,247 bases
Orientation:
Plus strand

Genomic View for CLEC3A Gene

Genes around CLEC3A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLEC3A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLEC3A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLEC3A Gene

Proteins for CLEC3A Gene

  • Protein details for CLEC3A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O75596-CLC3A_HUMAN
    Recommended name:
    C-type lectin domain family 3 member A
    Protein Accession:
    O75596
    Secondary Accessions:
    • B2R8C4
    • Q3SX91
    • Q6UXF5

    Protein attributes for CLEC3A Gene

    Size:
    197 amino acids
    Molecular mass:
    22233 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAQ88742.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for CLEC3A Gene

Proteomics data for CLEC3A Gene at MOPED

Post-translational modifications for CLEC3A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CLEC3A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CLEC3A Gene

Domains & Families for CLEC3A Gene

Gene Families for CLEC3A Gene

Protein Domains for CLEC3A Gene

Suggested Antigen Peptide Sequences for CLEC3A Gene

Graphical View of Domain Structure for InterPro Entry

O75596

UniProtKB/Swiss-Prot:

CLC3A_HUMAN :
  • Contains 1 C-type lectin domain.
Domain:
  • Contains 1 C-type lectin domain.
genes like me logo Genes that share domains with CLEC3A: view

Function for CLEC3A Gene

Molecular function for CLEC3A Gene

UniProtKB/Swiss-Prot Function:
Promotes cell adhesion to laminin-332 and fibronectin.
genes like me logo Genes that share phenotypes with CLEC3A: view

Animal Model Products

  • Taconic Biosciences Mouse Models for CLEC3A

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLEC3A Gene

Localization for CLEC3A Gene

Subcellular locations from UniProtKB/Swiss-Prot for CLEC3A Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CLEC3A Gene COMPARTMENTS Subcellular localization image for CLEC3A gene
Compartment Confidence
extracellular 5
chloroplast 2
mitochondrion 2
plasma membrane 2
cytosol 1
nucleus 1

No data available for Gene Ontology (GO) - Cellular Components for CLEC3A Gene

Pathways & Interactions for CLEC3A Gene

SuperPathways for CLEC3A Gene

No Data Available

Interacting Proteins for CLEC3A Gene

Gene Ontology (GO) - Biological Process for CLEC3A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CLEC3A Gene

Drugs & Compounds for CLEC3A Gene

No Compound Related Data Available

Transcripts for CLEC3A Gene

mRNA/cDNA for CLEC3A Gene

(2) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(15) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CLEC3A Gene

C-type lectin domain family 3, member A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CLEC3A Gene

No ASD Table

Relevant External Links for CLEC3A Gene

GeneLoc Exon Structure for
CLEC3A
ECgene alternative splicing isoforms for
CLEC3A

Expression for CLEC3A Gene

mRNA expression in normal human tissues for CLEC3A Gene

mRNA differential expression in normal tissues according to GTEx for CLEC3A Gene

This gene is overexpressed in Bladder (x23.8).

Protein differential expression in normal tissues from HIPED for CLEC3A Gene

This gene is overexpressed in Kidney (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CLEC3A Gene



SOURCE GeneReport for Unigene cluster for CLEC3A Gene Hs.177936

mRNA Expression by UniProt/SwissProt for CLEC3A Gene

O75596-CLC3A_HUMAN
Tissue specificity: Restricted to cartilage and breast. Also expressed in breast cancers.
genes like me logo Genes that share expression patterns with CLEC3A: view

Protein tissue co-expression partners for CLEC3A Gene

Primer Products

Orthologs for CLEC3A Gene

This gene was present in the common ancestor of chordates.

Orthologs for CLEC3A Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CLEC3A 35
  • 89.51 (n)
  • 87.43 (a)
CLEC3A 36
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CLEC3A 35
  • 91.16 (n)
  • 90.31 (a)
CLEC3A 36
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Clec3a 35
  • 86.05 (n)
  • 87.24 (a)
Clec3a 16
Clec3a 36
  • 87 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia CLEC3A 35
  • 99.32 (n)
  • 99.49 (a)
CLEC3A 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Clec3a 35
  • 87.41 (n)
  • 86.73 (a)
oppossum
(Monodelphis domestica)
Mammalia CLEC3A 36
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CLEC3A 36
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves CLEC3A 35
  • 74.27 (n)
  • 75.65 (a)
CLEC3A 36
  • 75 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CLEC3A 36
  • 72 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia clec3a 35
  • 69.43 (n)
  • 68.39 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC100330122 35
  • 62.15 (n)
  • 57.81 (a)
CLEC3A 36
  • 57 (a)
OneToOne
Species with no ortholog for CLEC3A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CLEC3A Gene

ENSEMBL:
Gene Tree for CLEC3A (if available)
TreeFam:
Gene Tree for CLEC3A (if available)

Paralogs for CLEC3A Gene

Paralogs for CLEC3A Gene

(2) SIMAP similar genes for CLEC3A Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with CLEC3A: view

Variants for CLEC3A Gene

Sequence variations from dbSNP and Humsavar for CLEC3A Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs2072663 - 78,030,836(+) TCCCT(A/C)AATAG reference, missense
rs13334338 -- 78,027,409(+) GAAAG(C/T)GCTGG intron-variant, upstream-variant-2KB
rs4624192 -- 78,027,669(+) GGTTT(G/T)TTTTC intron-variant, upstream-variant-2KB
rs61115927 -- 78,025,069(+) GACCT(C/G)AGGTG intron-variant
rs4888722 -- 78,029,681(+) ttaaa(C/T)aaata intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CLEC3A Gene

Variant ID Type Subtype PubMed ID
nsv906962 CNV Gain 21882294
dgv2919n71 CNV Gain 21882294
nsv833293 CNV Gain 17160897
nsv817742 CNV Gain 17921354
dgv2920n71 CNV Loss 21882294

Variation tolerance for CLEC3A Gene

Residual Variation Intolerance Score: 55% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.05; 68.73% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CLEC3A Gene

Human Gene Mutation Database (HGMD)
CLEC3A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CLEC3A Gene

Disorders for CLEC3A Gene

Relevant External Links for CLEC3A

Genetic Association Database (GAD)
CLEC3A
Human Genome Epidemiology (HuGE) Navigator
CLEC3A
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CLEC3A

No disorders were found for CLEC3A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLEC3A Gene

Publications for CLEC3A Gene

  1. The cartilage-derived, C-type lectin (CLECSF1): structure of the gene and chromosomal location. (PMID: 10524194) Neame P.J. … Grimm D.R. (Biochim. Biophys. Acta 1999) 2 3 4 23 67
  2. Matrilysin (MMP-7) cleaves C-type lectin domain family 3 member A (CLEC3A) on tumor cell surface and modulates its cell adhesion activity. (PMID: 19173304) Tsunezumi J. … Miyazaki K. (J. Cell. Biochem. 2009) 3 23
  3. Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9. (PMID: 24376456) Simino J. … Rao D.C. (Front Genet 2013) 3
  4. Fine mapping and association studies of a high-density lipoprotein cholesterol linkage region on chromosome 16 in French-Canadian subjects. (PMID: 19844255) Dastani Z. … Genest J. (Eur. J. Hum. Genet. 2010) 3
  5. A lectin (CfLec-2) aggregating Staphylococcus haemolyticus from scallop Chlamys farreri. (PMID: 18203621) Zheng P. … Xing K. (Fish Shellfish Immunol. 2008) 23

Products for CLEC3A Gene

Sources for CLEC3A Gene

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