Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CLEC20A Gene

Aliases for CLEC20A Gene

  • C-Type Lectin Domain Containing 20A 2 3 5
  • Long Intergenic Non-Protein Coding RNA 83 2 3
  • C-Type Lectin Domain Family 20 Member A 2 3
  • NCRNA00083 3 4
  • LINC00083 3 4
  • Putative C-Type Lectin Domain-Containing Protein LINC00083 3
  • Non-Protein Coding RNA 83 2

External Ids for CLEC20A Gene

Previous HGNC Symbols for CLEC20A Gene

  • NCRNA00083
  • LINC00083

Summaries for CLEC20A Gene

GeneCards Summary for CLEC20A Gene

CLEC20A (C-Type Lectin Domain Containing 20A) is a Protein Coding gene.

Additional gene information for CLEC20A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLEC20A Gene

Genomics for CLEC20A Gene

Regulatory Elements for CLEC20A Gene

Enhancers for CLEC20A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H179292 1.1 ENCODE 14.6 -795.0 -795049 3.4 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF143 TOR3A AXDND1 LHX4 ENSG00000261831 CLEC20A RN7SL230P SOAT1 TDRD5 GC01P179293 LOC100420262
GH01H179364 1.1 ENCODE 14.6 -866.1 -866107 2.2 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 YBX1 ZNF2 ZBTB7B YY1 AXDND1 TDRD5 RN7SL230P ENSG00000261831 CLEC20A LHX4 RALGPS2 SOAT1 TOR3A MEF2AP1
GH01H178299 1 Ensembl ENCODE 11.5 +199.5 199450 1.2 CTCF PKNOX1 RAD21 RFX5 ZNF664 SCRT2 SMC3 ZNF143 ZNF654 TRIM22 CLEC20A C1orf220 RASAL2 LOC730102 LOC105371629 ENSG00000270575
GH01H178310 0.8 ENCODE 10.7 +188.8 188764 0.2 CTCF PKNOX1 SAP130 GTF2E2 ARID4B CEBPG BMI1 ZNF2 RAD21 ZNF7 CLEC20A C1orf220 LOC105371629 ENSG00000270575
GH01H178549 0.8 dbSUPER 9.9 -51.9 -51879 4.5 SOX13 FOXA2 SAP130 MAX CEBPG RAD21 RARA YY1 TEAD3 NR2F6 TEX35 CLEC20A FAM20B RALGPS2 C1orf220 GC01P178561
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CLEC20A on UCSC Golden Path with GeneCards custom track

Genomic Locations for CLEC20A Gene

Genomic Locations for CLEC20A Gene
chr1:178,478,153-178,499,634
(GRCh38/hg38)
Size:
21,482 bases
Orientation:
Minus strand
chr1:178,463,491-178,464,192
(GRCh37/hg19)

Genomic View for CLEC20A Gene

Genes around CLEC20A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLEC20A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLEC20A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLEC20A Gene

Proteins for CLEC20A Gene

  • Protein details for CLEC20A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZU45-CL20A_HUMAN
    Recommended name:
    Putative C-type lectin domain family 20 member A
    Protein Accession:
    Q6ZU45

    Protein attributes for CLEC20A Gene

    Size:
    233 amino acids
    Molecular mass:
    25812 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CLEC20A Gene

Post-translational modifications for CLEC20A Gene

No Post-translational modifications

Other Protein References for CLEC20A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CLEC20A Gene

Domains & Families for CLEC20A Gene

Gene Families for CLEC20A Gene

Protein Domains for CLEC20A Gene

Suggested Antigen Peptide Sequences for CLEC20A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CLEC20A: view

No data available for UniProtKB/Swiss-Prot for CLEC20A Gene

Function for CLEC20A Gene

Gene Ontology (GO) - Molecular Function for CLEC20A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004888 transmembrane signaling receptor activity IBA --
GO:0030246 carbohydrate binding IEA --
genes like me logo Genes that share ontologies with CLEC20A: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLEC20A Gene

Localization for CLEC20A Gene

Gene Ontology (GO) - Cellular Components for CLEC20A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005887 integral component of plasma membrane IBA --
genes like me logo Genes that share ontologies with CLEC20A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for CLEC20A Gene

Pathways & Interactions for CLEC20A Gene

SuperPathways for CLEC20A Gene

No Data Available

Interacting Proteins for CLEC20A Gene

Gene Ontology (GO) - Biological Process for CLEC20A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
genes like me logo Genes that share ontologies with CLEC20A: view

No data available for Pathways by source and SIGNOR curated interactions for CLEC20A Gene

Drugs & Compounds for CLEC20A Gene

No Compound Related Data Available

Transcripts for CLEC20A Gene

mRNA/cDNA for CLEC20A Gene

(3) REFSEQ mRNAs :
(4) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CLEC20A Gene

No ASD Table

Relevant External Links for CLEC20A Gene

GeneLoc Exon Structure for
CLEC20A
ECgene alternative splicing isoforms for
CLEC20A

Expression for CLEC20A Gene

NURSA nuclear receptor signaling pathways regulating expression of CLEC20A Gene:

CLEC20A
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLEC20A Gene

Orthologs for CLEC20A Gene

Evolution for CLEC20A Gene

ENSEMBL:
Gene Tree for CLEC20A (if available)
TreeFam:
Gene Tree for CLEC20A (if available)

No data available for Orthologs for CLEC20A Gene

Paralogs for CLEC20A Gene

No data available for Paralogs for CLEC20A Gene

Variants for CLEC20A Gene

Sequence variations from dbSNP and Humsavar for CLEC20A Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000028675 -- 178,497,647(+) CCTCT(A/G)TCATT intron-variant
rs1000055816 -- 178,486,790(+) GCGCA(-/G)GGTGG intron-variant
rs1000059997 -- 178,497,880(+) GGGTA(A/G)CAGAG intron-variant
rs1000268262 -- 178,483,416(+) AGCCA(A/G)CGATG intron-variant
rs1000284725 -- 178,480,693(+) AGGAG(C/T)ATGGG intron-variant

Relevant External Links for CLEC20A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLEC20A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CLEC20A Gene

Disorders for CLEC20A Gene

Relevant External Links for CLEC20A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CLEC20A
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CLEC20A

No disorders were found for CLEC20A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLEC20A Gene

Publications for CLEC20A Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4 60

Products for CLEC20A Gene

Sources for CLEC20A Gene

Content
Loading form....