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Aliases for CLEC20A Gene

Aliases for CLEC20A Gene

  • C-Type Lectin Domain Containing 20A 2 3
  • C-Type Lectin Domain Family 20 Member A 2 3 5
  • Long Intergenic Non-Protein Coding RNA 83 2 3
  • Putative C-Type Lectin Domain-Containing Protein LINC00083 3
  • Non-Protein Coding RNA 83 2
  • NCRNA00083 3
  • LINC00083 3

External Ids for CLEC20A Gene

Previous HGNC Symbols for CLEC20A Gene

  • NCRNA00083
  • LINC00083

Summaries for CLEC20A Gene

GeneCards Summary for CLEC20A Gene

CLEC20A (C-Type Lectin Domain Containing 20A) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLEC20A Gene

Genomics for CLEC20A Gene

Regulatory Elements for CLEC20A Gene

Enhancers for CLEC20A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G178299 1 Ensembl ENCODE 11.5 +199.5 199450 1.2 CTCF ESRRA PKNOX1 BACH1 RAD21 RFX5 ZNF664 SCRT2 SMC3 ZNF143 CLEC20A C1orf220 RASAL2 LOC730102 LOC105371629 ENSG00000270575
GH01G178310 0.8 ENCODE 10.7 +188.8 188764 0.3 CTCF PKNOX1 SAP130 GTF2E2 ARID4B CEBPG BMI1 ZNF2 RAD21 ZNF7 CLEC20A C1orf220 LOC105371629 ENSG00000270575
GH01G178549 0.8 dbSUPER 9.9 -51.9 -51879 4.5 SOX13 FOXA2 SAP130 MAX CEBPG RAD21 RARA YY1 TEAD3 NCOR1 TEX35 CLEC20A FAM20B RALGPS2 GC01P178561 C1orf220
GH01G178311 0.7 Ensembl 10.7 +188.5 188534 0.2 CTCF PKNOX1 SAP130 GTF2E2 ZSCAN4 ARID4B BMI1 CEBPG ZNF2 RAD21 CLEC20A C1orf220 LOC105371629 ENSG00000270575
GH01G178560 1 dbSUPER 5.3 -65.1 -65140 9.1 PKNOX1 FOXA2 ZFP64 ARID4B SIN3A ZNF48 ZNF2 YY1 GLIS2 ZNF143 TEX35 C1orf220 ENSG00000201791 CLEC20A RALGPS2 LOC730102 RNA5SP69 GC01P178569
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CLEC20A on UCSC Golden Path with GeneCards custom track

Genomic Location for CLEC20A Gene

Chromosome:
1
Start:
178,478,153 bp from pter
End:
178,499,634 bp from pter
Size:
21,482 bases
Orientation:
Minus strand

Genomic View for CLEC20A Gene

Genes around CLEC20A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLEC20A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLEC20A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLEC20A Gene

Proteins for CLEC20A Gene

  • Protein details for CLEC20A Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GWE9
    Recommended name:
    C-type lectin domain family 20 member A
    Protein Accession:
    A0A1B0GWE9

    Protein attributes for CLEC20A Gene

    Size:
    400 amino acids
    Molecular mass:
    44255 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CLEC20A Gene

Post-translational modifications for CLEC20A Gene

No Post-translational modifications

Other Protein References for CLEC20A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CLEC20A Gene

Domains & Families for CLEC20A Gene

Gene Families for CLEC20A Gene

Protein Domains for CLEC20A Gene

Suggested Antigen Peptide Sequences for CLEC20A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CLEC20A: view

No data available for UniProtKB/Swiss-Prot for CLEC20A Gene

Function for CLEC20A Gene

Gene Ontology (GO) - Molecular Function for CLEC20A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004888 transmembrane signaling receptor activity IBA --
GO:0030246 carbohydrate binding IEA --
genes like me logo Genes that share ontologies with CLEC20A: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLEC20A Gene

Localization for CLEC20A Gene

Gene Ontology (GO) - Cellular Components for CLEC20A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005887 integral component of plasma membrane IBA --
genes like me logo Genes that share ontologies with CLEC20A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for CLEC20A Gene

Pathways & Interactions for CLEC20A Gene

SuperPathways for CLEC20A Gene

No Data Available

Interacting Proteins for CLEC20A Gene

Gene Ontology (GO) - Biological Process for CLEC20A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
genes like me logo Genes that share ontologies with CLEC20A: view

No data available for Pathways by source and SIGNOR curated interactions for CLEC20A Gene

Drugs & Compounds for CLEC20A Gene

No Compound Related Data Available

Transcripts for CLEC20A Gene

mRNA/cDNA for CLEC20A Gene

(3) REFSEQ mRNAs :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CLEC20A Gene

No ASD Table

Relevant External Links for CLEC20A Gene

GeneLoc Exon Structure for
CLEC20A
ECgene alternative splicing isoforms for
CLEC20A

Expression for CLEC20A Gene

NURSA nuclear receptor signaling pathways regulating expression of CLEC20A Gene:

CLEC20A
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLEC20A Gene

Orthologs for CLEC20A Gene

Evolution for CLEC20A Gene

ENSEMBL:
Gene Tree for CLEC20A (if available)
TreeFam:
Gene Tree for CLEC20A (if available)

No data available for Orthologs for CLEC20A Gene

Paralogs for CLEC20A Gene

No data available for Paralogs for CLEC20A Gene

Variants for CLEC20A Gene

Sequence variations from dbSNP and Humsavar for CLEC20A Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000028675 -- 178,497,647(+) CCTCT(A/G)TCATT intron-variant
rs1000055816 -- 178,486,790(+) GCGCA(-/G)GGTGG intron-variant
rs1000059997 -- 178,497,880(+) GGGTA(A/G)CAGAG intron-variant
rs1000268262 -- 178,483,416(+) AGCCA(A/G)CGATG intron-variant
rs1000284725 -- 178,480,693(+) AGGAG(C/T)ATGGG intron-variant

Relevant External Links for CLEC20A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLEC20A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CLEC20A Gene

Disorders for CLEC20A Gene

Relevant External Links for CLEC20A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CLEC20A

No disorders were found for CLEC20A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLEC20A Gene

Publications for CLEC20A Gene

No publications were found for CLEC20A Gene.

Products for CLEC20A Gene

Sources for CLEC20A Gene

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