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Aliases for CLEC19A Gene

Aliases for CLEC19A Gene

  • C-Type Lectin Domain Family 19, Member A 2 3

External Ids for CLEC19A Gene

Previous GeneCards Identifiers for CLEC19A Gene

  • GC00U926688

Summaries for CLEC19A Gene

GeneCards Summary for CLEC19A Gene

CLEC19A (C-Type Lectin Domain Family 19, Member A) is a Protein Coding gene. GO annotations related to this gene include carbohydrate binding. An important paralog of this gene is HAPLN1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLEC19A Gene

Genomics for CLEC19A Gene

Genomic Location for CLEC19A Gene

Start:
19,285,739 bp from pter
End:
19,322,145 bp from pter
Size:
36,407 bases
Orientation:
Plus strand

Genomic View for CLEC19A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CLEC19A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLEC19A Gene

No data available for Regulatory Elements for CLEC19A Gene

Proteins for CLEC19A Gene

  • Protein details for CLEC19A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6UXS0-CL19A_HUMAN
    Recommended name:
    C-type lectin domain family 19 member A
    Protein Accession:
    Q6UXS0
    Secondary Accessions:
    • Q0VF32

    Protein attributes for CLEC19A Gene

    Size:
    136 amino acids
    Molecular mass:
    15448 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CLEC19A Gene

Proteomics data for CLEC19A Gene at MOPED

Post-translational modifications for CLEC19A Gene

Other Protein References for CLEC19A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CLEC19A Gene

Domains for CLEC19A Gene

Gene Families for CLEC19A Gene

HGNC:
  • CLEC :C-type lectin domain containing

Protein Domains for CLEC19A Gene

Suggested Antigen Peptide Sequences for CLEC19A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6UXS0

UniProtKB/Swiss-Prot:

CL19A_HUMAN :
  • Q6UXS0
Domain:
  • Contains 1 C-type lectin domain.
genes like me logo Genes that share domains with CLEC19A: view

Function for CLEC19A Gene

Gene Ontology (GO) - Molecular Function for CLEC19A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030246 carbohydrate binding IEA --
genes like me logo Genes that share ontologies with CLEC19A: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CLEC19A Gene

Localization for CLEC19A Gene

Subcellular locations from UniProtKB/Swiss-Prot for CLEC19A Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CLEC19A Gene COMPARTMENTS Subcellular localization image for CLEC19A gene
Compartment Confidence
extracellular 3
cytosol 1
endoplasmic reticulum 1
golgi apparatus 1
lysosome 1
mitochondrion 1
nucleus 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for CLEC19A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with CLEC19A: view

Pathways for CLEC19A Gene

SuperPathways for CLEC19A Gene

No Data Available

Interacting Proteins for CLEC19A Gene

Gene Ontology (GO) - Biological Process for CLEC19A Gene

None

No data available for Pathways by source for CLEC19A Gene

Transcripts for CLEC19A Gene

mRNA/cDNA for CLEC19A Gene

(1) Additional mRNA sequences :
(2) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CLEC19A Gene

C-type lectin domain family 19, member A:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CLEC19A

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CLEC19A Gene

No ASD Table

Relevant External Links for CLEC19A Gene

GeneLoc Exon Structure for
CLEC19A
ECgene alternative splicing isoforms for
CLEC19A

Expression for CLEC19A Gene

mRNA expression in normal human tissues for CLEC19A Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CLEC19A Gene

SOURCE GeneReport for Unigene cluster for CLEC19A Gene Hs.632180

genes like me logo Genes that share expressions with CLEC19A: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CLEC19A Gene

Orthologs for CLEC19A Gene

This gene was present in the common ancestor of animals.

Orthologs for CLEC19A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CLEC19A 35
  • 98.75 (n)
  • 99.46 (a)
cow
(Bos Taurus)
Mammalia CLEC19A 35
  • 88.35 (n)
  • 89.78 (a)
CLEC19A 36
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CLEC19A 35
  • 88.71 (n)
  • 91.4 (a)
oppossum
(Monodelphis domestica)
Mammalia CLEC19A 36
  • 70 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CLEC19A 36
  • 75 (a)
OneToOne
chicken
(Gallus gallus)
Aves CLEC19A 36
  • 58 (a)
OneToOne
LOC771758 35
  • 76.97 (n)
  • 76.97 (a)
lizard
(Anolis carolinensis)
Reptilia CLEC19A 36
  • 42 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia clec19a 35
  • 67.77 (n)
  • 64.84 (a)
zebrafish
(Danio rerio)
Actinopterygii clec19a 35
  • 67.58 (n)
  • 69.4 (a)
clec19a 36
  • 38 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea clec-149 36
  • 9 (a)
OneToMany
Species with no ortholog for CLEC19A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CLEC19A Gene

ENSEMBL:
Gene Tree for CLEC19A (if available)
TreeFam:
Gene Tree for CLEC19A (if available)

Paralogs for CLEC19A Gene

Paralogs for CLEC19A Gene

Selected SIMAP similar genes for CLEC19A Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with CLEC19A: view

Variants for CLEC19A Gene

Sequence variations from dbSNP and Humsavar for CLEC19A Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs6367 -- 19,288,039(+) AGCTC(A/G)CAGTT intron-variant
rs179196 -- 19,285,897(+) TCCAC(G/T)CTGCA missense, reference
rs179197 -- 19,287,479(+) acaca(A/G)acatt intron-variant
rs179198 -- 19,287,506(+) CTTGC(A/C)TCCTT intron-variant
rs179200 -- 19,288,349(+) CCGGC(A/C)GACCA intron-variant

Relevant External Links for CLEC19A Gene

HapMap Linkage Disequilibrium report
CLEC19A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CLEC19A Gene

Disorders for CLEC19A Gene

No disorders were found for CLEC19A Gene.

No data available for UniProtKB/Swiss-Prot for CLEC19A Gene

Publications for CLEC19A Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for CLEC19A Gene

Sources for CLEC19A Gene

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