Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CLEC18C Gene

Aliases for CLEC18C Gene

  • C-Type Lectin Domain Family 18, Member C 2 3
  • Mannose Receptor-Like Protein 3 3 4
  • C-Type Lectin Domain Family 18 Member C 3
  • Mannose Receptor-Like 3 3
  • MRCL3 3
  • MRLP3 4
  • MRCL 3

External Ids for CLEC18C Gene

Previous GeneCards Identifiers for CLEC18C Gene

  • GC16P068767
  • GC16P070207
  • GC16M060201

Summaries for CLEC18C Gene

GeneCards Summary for CLEC18C Gene

CLEC18C (C-Type Lectin Domain Family 18, Member C) is a Protein Coding gene. Among its related pathways are RhoGDI Pathway and ERK Signaling. GO annotations related to this gene include carbohydrate binding. An important paralog of this gene is CLEC18B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLEC18C Gene

Genomics for CLEC18C Gene

Regulatory Elements for CLEC18C Gene

Genomic Location for CLEC18C Gene

Start:
70,173,322 bp from pter
End:
70,187,361 bp from pter
Size:
14,040 bases
Orientation:
Plus strand

Genomic View for CLEC18C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CLEC18C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLEC18C Gene

Proteins for CLEC18C Gene

  • Protein details for CLEC18C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NCF0-CL18C_HUMAN
    Recommended name:
    C-type lectin domain family 18 member C
    Protein Accession:
    Q8NCF0
    Secondary Accessions:
    • Q8IUW8

    Protein attributes for CLEC18C Gene

    Size:
    446 amino acids
    Molecular mass:
    49585 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH39068.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for CLEC18C Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CLEC18C Gene

Proteomics data for CLEC18C Gene at MOPED

Post-translational modifications for CLEC18C Gene

  • Glycosylation at Asn144
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for CLEC18C Gene

Domains for CLEC18C Gene

Gene Families for CLEC18C Gene

HGNC:
  • CLEC :C-type lectin domain containing

Suggested Antigen Peptide Sequences for CLEC18C Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NCF0

UniProtKB/Swiss-Prot:

CL18C_HUMAN :
  • Q8NCF0
Domain:
  • Contains 1 C-type lectin domain.
  • Contains 1 EGF-like domain.
  • Contains 1 SCP domain.
genes like me logo Genes that share domains with CLEC18C: view

Function for CLEC18C Gene

Gene Ontology (GO) - Molecular Function for CLEC18C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
GO:0030246 carbohydrate binding IEA --
genes like me logo Genes that share ontologies with CLEC18C: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CLEC18C Gene

Localization for CLEC18C Gene

Subcellular locations from UniProtKB/Swiss-Prot for CLEC18C Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CLEC18C Gene COMPARTMENTS Subcellular localization image for CLEC18C gene
Compartment Confidence
extracellular 3
lysosome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for CLEC18C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with CLEC18C: view

Pathways for CLEC18C Gene

genes like me logo Genes that share pathways with CLEC18C: view

Pathways by source for CLEC18C Gene

Interacting Proteins for CLEC18C Gene

Gene Ontology (GO) - Biological Process for CLEC18C Gene

None

Transcripts for CLEC18C Gene

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CLEC18C

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CLEC18C Gene

No ASD Table

Relevant External Links for CLEC18C Gene

GeneLoc Exon Structure for
CLEC18C
ECgene alternative splicing isoforms for
CLEC18C

Expression for CLEC18C Gene

mRNA expression in normal human tissues for CLEC18C Gene

mRNA differential expression in normal tissues according to GTEx for CLEC18C Gene

This gene is overexpressed in Kidney - Cortex (30.0) and Testis (6.2).
genes like me logo Genes that share expressions with CLEC18C: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for CLEC18C Gene

Orthologs for CLEC18C Gene

This gene was present in the common ancestor of animals.

Orthologs for CLEC18C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 95 (a)
OneToMany
cow
(Bos Taurus)
Mammalia MRCL 36
  • 46 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 68 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Clec18a 36
  • 62 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 72 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 70 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 36
  • 64 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea lon-1 36
  • 23 (a)
OneToMany
Species with no ortholog for CLEC18C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for CLEC18C Gene

ENSEMBL:
Gene Tree for CLEC18C (if available)
TreeFam:
Gene Tree for CLEC18C (if available)

Paralogs for CLEC18C Gene

Selected SIMAP similar genes for CLEC18C Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with CLEC18C: view

Variants for CLEC18C Gene

Sequence variations from dbSNP and Humsavar for CLEC18C Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs2081212 -- 70,187,494(+) TGCAA(A/G)CTCCG downstream-variant-500B
rs2549215 -- 70,187,482(-) tgagc(C/G)gagat downstream-variant-500B
rs2549598 -- 70,173,267(+) ACCTT(C/T)GGTCT upstream-variant-2KB
rs2549599 -- 70,173,299(+) TTAGG(C/T)TGCAG upstream-variant-2KB
rs2549600 -- 70,173,925(+) AGCAC(C/T)GGAAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CLEC18C Gene

Variant ID Type Subtype PubMed ID
dgv895e1 CNV Complex 17122850
nsv1853 CNV Loss 18451855
dgv2892n71 CNV Gain 21882294
dgv2893n71 CNV Gain 21882294
dgv485n67 CNV Loss 20364138
nsv428328 CNV Gain+Loss 18775914
nsv436059 CNV Insertion 17901297
esv2657437 CNV Deletion 23128226
nsv833269 CNV Loss 17160897
nsv820087 CNV Loss 19587683
nsv469646 CNV Gain 16826518
nsv471695 CNV Loss 15918152
dgv2899n71 CNV Gain 21882294
esv33745 CNV Gain+Loss 17666407
dgv896e1 CNV Complex 17122850
dgv2901n71 CNV Gain 21882294
nsv9455 CNV Gain+Loss 18304495
esv25519 CNV Gain+Loss 19812545
nsv827728 CNV Loss 20364138
esv1007882 CNV Loss 20482838
nsv7285 OTHER Inversion 18451855
dgv2902n71 CNV Gain 21882294
nsv906866 CNV Gain 21882294
nsv833271 CNV Gain+Loss 17160897
nsv906867 CNV Gain 21882294
nsv482196 CNV Gain 20164927

Relevant External Links for CLEC18C Gene

HapMap Linkage Disequilibrium report
CLEC18C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CLEC18C Gene

Disorders for CLEC18C Gene

(1) University of Copenhagen DISEASES for CLEC18C Gene

genes like me logo Genes that share disorders with CLEC18C: view

No data available for UniProtKB/Swiss-Prot for CLEC18C Gene

Publications for CLEC18C Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  4. Toward an understanding of the protein interaction network of the human liver. (PMID: 21988832) Wang J. … Yang X. (Mol. Syst. Biol. 2011) 3
  5. The C-type lectin-like domain superfamily. (PMID: 16336259) Zelensky A.N. … Gready J.E. (FEBS J. 2005) 3

Products for CLEC18C Gene

Sources for CLEC18C Gene

Back to Top

Content