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Aliases for CLEC17A Gene

Aliases for CLEC17A Gene

  • C-Type Lectin Domain Containing 17A 2 3
  • C-Type Lectin Domain Family 17 Member A 2 3 5
  • Prolectin 2 3 4
  • C-Type Lectin Domain Family 17, Member A 2 3

External Ids for CLEC17A Gene

Previous GeneCards Identifiers for CLEC17A Gene

  • GC19P014559
  • GC19P014693
  • GC19P014264

Summaries for CLEC17A Gene

GeneCards Summary for CLEC17A Gene

CLEC17A (C-Type Lectin Domain Containing 17A) is a Protein Coding gene. GO annotations related to this gene include mannose binding and fucose binding. An important paralog of this gene is ASGR1.

UniProtKB/Swiss-Prot for CLEC17A Gene

  • Cell surface receptor which may be involved in carbohydrate-mediated communication between cells in the germinal center. Binds glycans with terminal alpha-linked mannose or fucose residues.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLEC17A Gene

Genomics for CLEC17A Gene

Regulatory Elements for CLEC17A Gene

Enhancers for CLEC17A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G014576 1 dbSUPER 6.2 -5.0 -4961 3.8 HDGF ATF1 PKNOX1 ARID4B SIN3A YY1 ZNF121 ELK1 ZNF143 KDM4B ZNF333 CLEC17A NDUFB7
GH19G014580 0.9 ENCODE 6.6 -2.1 -2051 0.2 CBX3 PTBP1 ZNF335 TCF12 GATA2 EGR1 ZNF143 RELB ETV6 IKZF2 CLEC17A NDUFB7
GH19G014582 1.4 Ensembl ENCODE dbSUPER 0.7 +0.8 771 1.9 HDGF TBP PKNOX1 TBL1XR1 SIN3A BMI1 ZNF207 RELB ETV6 IKZF2 RN7SL337P CLEC17A
GH19G014573 1.5 Ensembl ENCODE dbSUPER 0.4 -8.4 -8379 1.4 PKNOX1 ATF1 ARNT WRNIP1 ARID4B SIN3A BRCA1 ZNF2 TCF12 SLC30A9 ZNF333 NDUFB7 CLEC17A
GH19G014575 0.7 ENCODE 0.4 -7.1 -7131 0.2 CTCF ZNF654 L3MBTL2 ZMYM3 TRIM22 REST TBX21 RAD21 CHAMP1 ZNF579 ZNF333 NDUFB7 CLEC17A
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CLEC17A on UCSC Golden Path with GeneCards custom track

Genomic Location for CLEC17A Gene

14,582,914 bp from pter
14,611,157 bp from pter
28,244 bases
Plus strand

Genomic View for CLEC17A Gene

Genes around CLEC17A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLEC17A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLEC17A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLEC17A Gene

Proteins for CLEC17A Gene

  • Protein details for CLEC17A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    C-type lectin domain family 17, member A
    Protein Accession:
    Secondary Accessions:
    • A8MX68
    • B2RTX0
    • B7ZMM4

    Protein attributes for CLEC17A Gene

    378 amino acids
    Molecular mass:
    42935 Da
    Quaternary structure:
    • Oligomer; disulfide-linked.
    • Sequence=EAW84437.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for CLEC17A Gene


neXtProt entry for CLEC17A Gene

Post-translational modifications for CLEC17A Gene

No data available for DME Specific Peptides for CLEC17A Gene

Domains & Families for CLEC17A Gene

Gene Families for CLEC17A Gene

Suggested Antigen Peptide Sequences for CLEC17A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CLEC17A: view

No data available for UniProtKB/Swiss-Prot for CLEC17A Gene

Function for CLEC17A Gene

Molecular function for CLEC17A Gene

UniProtKB/Swiss-Prot Function:
Cell surface receptor which may be involved in carbohydrate-mediated communication between cells in the germinal center. Binds glycans with terminal alpha-linked mannose or fucose residues.

Gene Ontology (GO) - Molecular Function for CLEC17A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005537 mannose binding IDA 19419970
GO:0030246 carbohydrate binding IEA --
GO:0042806 fucose binding IDA 19419970
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with CLEC17A: view
genes like me logo Genes that share phenotypes with CLEC17A: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CLEC17A Gene

Localization for CLEC17A Gene

Subcellular locations from UniProtKB/Swiss-Prot for CLEC17A Gene

Membrane; Single-pass type II membrane protein. Note=In fibroblasts, expressed on the cell surface. {ECO:0000269 PubMed:19419970}.

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CLEC17A gene
Compartment Confidence
plasma membrane 3
nucleus 1
cytosol 1

Gene Ontology (GO) - Cellular Components for CLEC17A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0009986 cell surface IDA 19419970
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CLEC17A: view

Pathways & Interactions for CLEC17A Gene

SuperPathways for CLEC17A Gene

No Data Available

Interacting Proteins for CLEC17A Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
Selected Interacting proteins: ENSP00000393719 Q6ZS10-CL17A_HUMAN for CLEC17A Gene via STRING UniProtKB IID

Gene Ontology (GO) - Biological Process for CLEC17A Gene


No data available for Pathways by source and SIGNOR curated interactions for CLEC17A Gene

Drugs & Compounds for CLEC17A Gene

No Compound Related Data Available

Transcripts for CLEC17A Gene

mRNA/cDNA for CLEC17A Gene

(12) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CLEC17A Gene

C-type lectin domain family 17, member A:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CLEC17A Gene

No ASD Table

Relevant External Links for CLEC17A Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CLEC17A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CLEC17A Gene

mRNA differential expression in normal tissues according to GTEx for CLEC17A Gene

This gene is overexpressed in Spleen (x4.5).

Protein differential expression in normal tissues from HIPED for CLEC17A Gene

This gene is overexpressed in Blymphocyte (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for CLEC17A Gene

Protein tissue co-expression partners for CLEC17A Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CLEC17A Gene:


SOURCE GeneReport for Unigene cluster for CLEC17A Gene:


mRNA Expression by UniProt/SwissProt for CLEC17A Gene:

Tissue specificity: Expressed on dividing B-cells of germinal centers in various tissues, including lymph nodes, tonsils, stomach, intestine, appendix and spleen.

Evidence on tissue expression from TISSUES for CLEC17A Gene

  • Spleen(4.2)
  • Blood(4.1)
genes like me logo Genes that share expression patterns with CLEC17A: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLEC17A Gene

Orthologs for CLEC17A Gene

This gene was present in the common ancestor of chordates.

Orthologs for CLEC17A Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia CLEC17A 34 35
  • 99.27 (n)
(Canis familiaris)
Mammalia CLEC17A 34 35
  • 84.58 (n)
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 42 (a)
-- 35
  • 38 (a)
(Monodelphis domestica)
Mammalia -- 35
  • 27 (a)
-- 35
  • 22 (a)
-- 35
  • 19 (a)
(Gallus gallus)
Aves LOC426106 34
  • 48.68 (n)
(Anolis carolinensis)
Reptilia -- 35
  • 36 (a)
Species where no ortholog for CLEC17A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CLEC17A Gene

Gene Tree for CLEC17A (if available)
Gene Tree for CLEC17A (if available)

Paralogs for CLEC17A Gene

(6) SIMAP similar genes for CLEC17A Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with CLEC17A: view

Variants for CLEC17A Gene

Sequence variations from dbSNP and Humsavar for CLEC17A Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000087526 -- 14,609,399(+) CTTTA(A/G)TAAAT intron-variant
rs1000109830 -- 14,579,227(+) CTCAG(A/G)TGATC upstream-variant-2KB
rs1000156985 -- 14,582,027(+) CTGGG(A/C)CATGC intron-variant, upstream-variant-2KB
rs1000335974 -- 14,589,547(+) TACTA(C/T)ACCCT intron-variant
rs1000436052 -- 14,594,884(+) ATTTA(-/T)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CLEC17A Gene

Variant ID Type Subtype PubMed ID
esv25063 CNV loss 19812545
esv2650508 CNV insertion 19546169
esv2718215 CNV deletion 23290073
esv2718216 CNV deletion 23290073
esv3352877 CNV duplication 20981092
esv3381235 CNV duplication 20981092
esv3643748 CNV loss 21293372
esv3893167 CNV gain 25118596
esv7099 CNV loss 19470904
nsv820025 CNV insertion 19587683

Variation tolerance for CLEC17A Gene

Residual Variation Intolerance Score: 74.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.49; 77.56% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CLEC17A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CLEC17A Gene

Disorders for CLEC17A Gene

Relevant External Links for CLEC17A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CLEC17A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLEC17A Gene

Publications for CLEC17A Gene

  1. Prolectin, a glycan-binding receptor on dividing B cells in germinal centers. (PMID: 19419970) Graham S.A. … Drickamer K. (J. Biol. Chem. 2009) 2 3 4 64
  2. Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis. (PMID: 23453885) (Lancet 2013) 3 64
  3. The B-cell antigen receptor signals through a preformed transducer module of SLP65 and CIN85. (PMID: 21822214) Oellerich T. … Wienands J. (EMBO J. 2011) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64
  5. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4 64

Products for CLEC17A Gene

Sources for CLEC17A Gene

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