Set Analyses:
GeneALaCart
GeneDecks
VarElect
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 


CLEC10A Gene

protein-coding   GIFtS: 54
GCID: GC17M006977

C-Type Lectin Domain Family 10, Member A

(Previous names: C-type (calcium dependent, carbohydrate-recognition domain)...)
(Previous symbols: CLECSF13, CLECSF14)
  See related diseases
at
MalaCards
 

Aliases
for CLEC10A gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

TryGeneCards Plus
Aliases
C-Type Lectin Domain Family 10, Member A1 2     MGL2 5
CLECSF141 2 3 5     HML22
CLECSF131 2 3     C-Type (Calcium Dependent, Carbohydrate-Recognition Domain) Lectin,
Superfamily Member 13 (Macrophage-Derived)2
HML2 3 5     C-Type Lectin Domain Family 10 Member A2
C-Type (Calcium Dependent, Carbohydrate-Recognition Domain) Lectin,
Superfamily Member 14 (Macrophage-Derived)1 2
     C-Type Lectin Superfamily Member 143
Macrophage Lectin 2 (Calcium Dependent)1 2     CD301 Antigen3
CD3012 5     Macrophage Lectin 23

External Ids:    HGNC: 169161   Entrez Gene: 104622   Ensembl: ENSG000001325147   OMIM: 6059995   UniProtKB: Q8IUN93   

Export aliases for CLEC10A gene to outside databases

Previous GC identifers: GC17M006919 GC17M006923 GC17M006871


Summaries
for CLEC10A gene

(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

TryGeneCards Plus
Entrez Gene summary for CLEC10A Gene:
This gene encodes a member of the C-type lectin/C-type lectin-like domain (CTL/CTLD) superfamily. Members of this
family share a common protein fold and have diverse functions, such as cell adhesion, cell-cell signalling,
glycoprotein turnover, and roles in inflammation and immune response. The encoded type 2 transmembrane protein
may function as a cell surface antigen. Two transcript variants encoding distinct isoforms have been identified
for this gene. (provided by RefSeq, Jul 2008)

GeneCards Summary for CLEC10A Gene:
CLEC10A (C-type lectin domain family 10, member A) is a protein-coding gene. Diseases associated with CLEC10A include lown-ganong-levine syndrome, and methylmalonic acidemia. GO annotations related to this gene include carbohydrate binding. An important paralog of this gene is CD207.

UniProtKB/Swiss-Prot: CLC10_HUMAN, Q8IUN9
Function: Probable role in regulating adaptive and innate immune responses. Binds in a calcium-dependent manner to
terminal galactose and N-acetylgalactosamine units, linked to serine or threonine. These sugar moieties are known
as Tn-Ag and are expressed in a variety of carcinoma cells

Gene Wiki entry for CLEC10A Gene


Genomic Views
for CLEC10A gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
About This Section

TryGeneCards Plus
RefSeq DNA sequence:
NC_000017.11  NT_010718.17  NC_018928.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the CLEC10A gene promoter:
         NF-1/L   Spz1   Lmo2   MyoD   Pax-2   Pax-2a   Arnt   PPAR-gamma1   Pax-2b   PPAR-gamma2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: CLEC10A promoter sequence
   Search Chromatin IP Primers for CLEC10A

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CLEC10A


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17p13.1   Ensembl cytogenetic band:  17p13.1   HGNC cytogenetic band: 17p13.2

CLEC10A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CLEC10A gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M006977:  view genomic region     (about GC identifiers)

Start:
 6,977,856 bp from pter      End:
 6,983,626 bp from pter
Size:
 5,771 bases      Orientation:
 minus strand

Proteins
for CLEC10A gene

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

TryGeneCards Plus
UniProtKB/Swiss-Prot: CLC10_HUMAN, Q8IUN9 (See protein sequence)
Recommended Name: C-type lectin domain family 10 member A  
Size: 316 amino acids; 35446 Da
Secondary accessions: A8K8J8 Q14538 Q6PIW3
Alternative splicing: 3 isoforms:  Q8IUN9-1   Q8IUN9-2   Q8IUN9-3   

Explore the universe of human proteins at neXtProt for CLEC10A: NX_Q8IUN9

Explore proteomics data for CLEC10A at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn78, Asn173
  • Modification sites at PhosphoSitePlus

    • See CLEC10A Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_006335.2  NP_878910.1  

    ENSEMBL proteins: 
     ENSP00000254868   ENSP00000414938   ENSP00000461800   ENSP00000458728   ENSP00000460252  

    CLEC10A Human Recombinant Protein Products:

    Browse Purified and Recombinant Proteins at EMD Millipore
    R&D Systems Recombinant & Natural Proteins for CLEC10A (CLEC10A/CD301)
    Browse recombinant and purified proteins available from Enzo Life Sciences
    OriGene Purified Proteins for CLEC10A
    OriGene Protein Over-expression Lysate for CLEC10A
    OriGene MassSpec for CLEC10A
    OriGene Custom Protein Services for CLEC10A
    GenScript Custom Purified and Recombinant Proteins Services for CLEC10A
    Novus Biologicals CLEC10A Proteins
    Novus Biologicals CLEC10A Lysates
    Sino Biological Recombinant Protein for CLEC10A
    Sino Biological Cell Lysate for CLEC10A
    Browse ProSpec Recombinant Proteins
    Cloud-Clone Corp. Proteins for CLEC10A

    CLEC10A Antibody Products:

    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    R&D Systems Antibodies for CLEC10A (CLEC10A/CD301)
    OriGene Antibodies for CLEC10A
    OriGene Custom Antibody Services for CLEC10A
    Novus Biologicals CLEC10A Antibodies
    Abcam antibodies for CLEC10A
    Cloud-Clone Corp. Antibodies for CLEC10A
    ThermoFisher Antibodies for CLEC10A
    LSBio Antibodies in human, mouse, rat for CLEC10A

    CLEC10A Assay Products:

    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Assay Services for CLEC10A
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for CLEC10A
    Browse Enzo Life Sciences for kits & assays
    Cloud-Clone Corp. ELISAs for CLEC10A
    Cloud-Clone Corp. CLIAs for CLEC10A

    Domains /
    Families
    for CLEC10A gene

    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    TryGeneCards Plus    		 HGNC Gene Families:
    CD: CD molecules
    CLEC: C-type lectin domain containing

    5 InterPro protein domains:
     IPR005640 Lectin_N
     IPR016187 C-type_lectin_fold
     IPR018378 C-type_lectin_CS
     IPR016186 C-type_lectin-like
     IPR001304 C-type_lectin

    Graphical View of Domain Structure for InterPro Entry Q8IUN9

    ProtoNet protein and cluster: Q8IUN9

    2 Blocks protein domains:
    IPB002353 Type II antifreeze protein signature
    IPB005640 Hepatic lectin


    UniProtKB/Swiss-Prot: CLC10_HUMAN, Q8IUN9
    Similarity: Contains 1 C-type lectin domain


    CLEC10A for domains           About GeneDecksing


    Function
    for CLEC10A gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
    About This Section

    TryGeneCards Plus
    Molecular Function:

         UniProtKB/Swiss-Prot Summary: CLC10_HUMAN, Q8IUN9
    Function: Probable role in regulating adaptive and innate immune responses. Binds in a calcium-dependent manner to
    terminal galactose and N-acetylgalactosamine units, linked to serine or threonine. These sugar moieties are known
    as Tn-Ag and are expressed in a variety of carcinoma cells

         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0030246carbohydrate binding IEA--
         
    CLEC10A for ontologies           About GeneDecksing


    Phenotypes:
         4 MGI mutant phenotypes (inferred from 1 allele) (MGI details for Mgl2):
     hematopoietic system  immune system  mortality/aging  reproductive system 

    CLEC10A for phenotypes           About GeneDecksing

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for CLEC10A
       inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for CLEC10A

       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for CLEC10A
       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for CLEC10A

    miRNA
    Products:            		Block miRNA regulation of human, mouse, rat CLEC10A using miScript Target Protectors
    1 qRT-PCR Assays for microRNA that regulate CLEC10A:
    hsa-miR-3144-3p
    SwitchGear 3'UTR luciferase reporter plasmid: CLEC10A 3' UTR sequence
    Inhib. RNA
    Products:            		OriGene RNAi products in human, mouse, rat for CLEC10A
    Predesigned siRNA for gene silencing in human, mouse, rat CLEC10A

    Gene Editing
    Products:    		DNA2.0 Custom Protein Engineering Service for CLEC10A

    Clone
    Products:             		 OriGene clones in human, mouse for CLEC10A (see all 12)
    OriGene ORF clones in mouse, rat for CLEC10A
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
    GenScript: all cDNA clones in your preferred vector (see all 2): CLEC10A (NM_006344)
    Sino Biological Human cDNA Clone for CLEC10A
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CLEC10A
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CLEC10A

    Cell Line
    Products:             		GenScript Custom overexpressing Cell Line Services for CLEC10A
    Browse ESI BIO Cell Lines and PureStem Progenitors for CLEC10A 
    In Situ Assay
    Products:       
         		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CLEC10A


    Localization
    for CLEC10A gene

    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
    About This Section

    TryGeneCards Plus
    Subcellular locations from UniProtKB/Swiss-Prot
    CLC10_HUMAN, Q8IUN9: Membrane; Single-pass type II membrane protein (Probable)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    plasma membrane4
    chloroplast2
    extracellular2
    mitochondrion2
    nucleus2
    cytosol1
    endoplasmic reticulum1
    peroxisome1

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane TAS8598452
    GO:0016021integral component of membrane IEA--

    CLEC10A for ontologies           About GeneDecksing


    Pathways & Interactions
    for CLEC10A gene

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
    About This Section

    TryGeneCards Plus



        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for CLEC10A
    Interactions:

        Search GeneGlobe Interaction Network for CLEC10A

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006897endocytosis IEA--
    GO:0045087innate immune response IEA--

    CLEC10A for ontologies           About GeneDecksing



    Drugs & Compounds
    for CLEC10A gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
    About This Section

    TryGeneCards Plus
    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for CLEC10A (CLC10)

    1 HMDB Compound for CLEC10A    About this table
    CompoundSynonyms CAS #PubMed Ids
    CalciumCa (see all 2)7440-70-2--

    1 Novoseek inferred chemical compound relationship for CLEC10A gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    galactose 59.4 1 14990712 (1)



    CLEC10A for compounds           About GeneDecksing



    Transcripts
    for CLEC10A gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
    About This Section

    TryGeneCards Plus
    REFSEQ mRNAs for CLEC10A gene (2 alternative transcripts): 
    NM_006344.2  NM_182906.2  

    Unigene Cluster for CLEC10A:

    C-type lectin domain family 10, member A
    Hs.54403  [show with all ESTs]
    Unigene Representative Sequence: BC027858
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000254868(uc002gej.3 uc002gek.3) ENST00000416562 ENST00000576549
    ENST00000576617(uc010clv.2) ENST00000571664 ENST00000571624
    miRNA
    Products:             		 Block miRNA regulation of human, mouse, rat CLEC10A using miScript Target Protectors
    1 qRT-PCR Assays for microRNA that regulate CLEC10A:
    hsa-miR-3144-3p
    SwitchGear 3'UTR luciferase reporter plasmid: CLEC10A 3' UTR sequence
    Inhib. RNA
    Products:             		OriGene RNAi products in human, mouse, rat for CLEC10A
    Predesigned siRNA for gene silencing in human, mouse, rat CLEC10A
    Clone
    Products:             		 OriGene clones in human, mouse for CLEC10A (see all 12)
    OriGene ORF clones in mouse, rat for CLEC10A
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
    GenScript: all cDNA clones in your preferred vector (see all 2): CLEC10A (NM_006344)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CLEC10A
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CLEC10A
    Primer
    Products:            		OriGene qSTAR qPCR primer pairs in human, mouse for CLEC10A
    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat CLEC10A
      QuantiTect SYBR Green Assays in human, mouse, rat CLEC10A
      QuantiFast Probe-based Assays in human, mouse, rat CLEC10A

    Additional mRNA sequence: 

    AK291975.1 AK292363.1 BC027858.1 BC039011.1 D50532.1 

    3 DOTS entries:

    DT.303878  DT.95309700  DT.97815987 

    Selected AceView cDNA sequences (see all 51):

    CA412958 AI078064 BI820020 BP377240 BU621880 BX282000 BM974488 BM675204 
    BU687211 CA418829 BI821633 BM714409 CR620226 AW173547 AL546075 BI910338 
    BQ018186 CA442104 BI910082 NM_006344 BP338480 BI820664 CA407906 AI436260 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for CLEC10A (see all 6)    About this scheme

    ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c · 6d ^ 7a · 7b ^ 8 ^ 9a · 9b
    SP1:                                -                                               -                                 
    SP2:                                -                             -                                                   
    SP3:                                -                             -                 -                                 
    SP4:                                -                             -                                                   
    SP5:                                                              -                 -                                 


    ECgene alternative splicing isoforms for CLEC10A

    Expression
    for CLEC10A gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    TryGeneCards Plus

    CLEC10A expression in normal human tissues (normalized intensities)      CLEC10A embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AAGGTATAAT
    CLEC10A Expression
    About this image


    CLEC10A expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     
     Blood (Hematopoietic System)
             Monocytes Peripheral Blood
    CLEC10A Protein expression data from MOPED1, PaxDb2 and MaxQB3:     About this image

    CLEC10A Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.54403
        Custom PCR Arrays for CLEC10A
    Primer
    Products:    		OriGene qSTAR qPCR primer pairs in human, mouse for CLEC10A
    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat CLEC10A
    QuantiTect SYBR Green Assays in human, mouse, rat CLEC10A
    QuantiFast Probe-based Assays in human, mouse, rat CLEC10A
    In Situ
    Assay Products:     
         		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CLEC10A

    Orthologs
    for CLEC10A gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    TryGeneCards Plus
    This gene was present in the common ancestor of chordates.

    Orthologs for CLEC10A gene from Selected species (see all 9)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    mouse
    (Mus musculus)    		 Mammalia Mgl21 , 5 macrophage galactose N-acetyl-galactosamine specific more1, 5 68.83(n)1
    55.52(a)1    		   11 (42.99 cM)5
    2168641  NM_145137.21  NP_660119.11 
     701303295 
    lizard
    (Anolis carolinensis)    		 Reptilia --
    		 Uncharacterized protein
    		 35(a)
    		 1 → many
    		 AAWZ02038207(3409-9140)
    tropical clawed frog
    (Xenopus tropicalis)    		 Amphibia clec10a1 C-type lectin domain family 10, member A 52.83(n)
    41.96(a)    		   496661  NM_001011225.1  NP_001011225.1 
    zebrafish
    (Danio rerio)    		 Actinopterygii LOC1018821271 asialoglycoprotein receptor 1-like 49.03(n)
    38.12(a)    		   101882127  XM_005170599.1  XP_005170656.1 


    ENSEMBL Gene Tree for CLEC10A (if available)
    TreeFam Gene Tree for CLEC10A (if available)

    Paralogs
    for CLEC10A gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section

    TryGeneCards Plus
    Paralogs for CLEC10A gene
    CD2072  CLEC17A2  CLEC4E2  ASGR22  CLEC4M2  CLEC4F2  CD2092  CLEC4A2  
    FCER22  CLEC6A2  ASGR12  CLEC4C2  CLEC4D2  CLEC4G2  
    18 SIMAP similar genes for CLEC10A using alignment to 4 protein entries:     CLC10_HUMAN (see all proteins):
    ASGR1    HBXBP    FCER2    ASGR2    KLRF1    CLEC2D
    CLEC4C    KLRG1    OLR1    CLEC4E    CLEC6A    CLEC2L
    KLRC1    REG1B    CLEC1B    CD209    CLEC4A    KLRC2

    CLEC10A for paralogs           About GeneDecksing



    Genomic Variants
    for CLEC10A gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
    About This Section

    TryGeneCards Plus
    Selected SNPs for CLEC10A (see all 289)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance    		Chr 17 posSequence#AA
    Chg    		TypeMore#Allele
    freq    		PopTotal
    sample    		More
    ----------
    rs769310261,2
    		C--6965261(+) CAGAGA/CCAGCC 2 -- ds50010--------
    rs1832629131,2
    		--6965334(+) GACCAC/TGGACG 2 -- ds50010--------
    rs4157041,2
    		C,F,A,H--6965548(-) TTAGGG/ATGATT 2 -- ds500122Minor allele frequency- A:0.47NS EA NA WA CSA 1178
    rs1869879671,2
    		--6965632(+) TCACAC/TAGGAC 2 -- ds50010--------
    rs2011633431,2
    		--6965683(+) GATTG-/CCCAAA 2 -- ds50010--------
    rs1491058061,2
    		C--6965756(+) TACACA/GAGAGT 2 -- ut310--------
    rs1164286931,2
    		F--6965775(+) TCACTT/GATATG 2 -- ut311Minor allele frequency- G:0.01WA 118
    rs16982251,2
    		C,F,H--6965860(-) CCAACC/GACTTC 2 -- ut31 ese315Minor allele frequency- G:0.07EA NA NS CSA WA 970
    rs37857981,2
    		C,F,H--6965919(-) CGATCG/ACAATA 2 -- ut31 ese38Minor allele frequency- A:0.07NS EA 968
    rs37857961,2
    		C--6966032(-) CCAACG/TTTTGA 2 -- ut310--------

    HapMap Linkage Disequilibrium report for CLEC10A (6977856 - 6983626 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 6 variations for CLEC10A:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2669929CNV Deletion23128226
    esv2422288CNV Deletion17116639
    esv2657406CNV Deletion23128226
    esv5167CNV Deletion18987735
    nsv907635CNV Loss21882294
    nsv457659CNV Loss19166990

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing CLEC10A
    DNA2.0 Custom Variant and Variant Library Synthesis for CLEC10A

    Disorders / Diseases
    for CLEC10A gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    TryGeneCards Plus    		 OMIM gene information: 605999    OMIM disorders: --

    5 diseases for CLEC10A:    About MalaCards
    lown-ganong-levine syndrome    methylmalonic acidemia    hepatitis b    hepatitis
    breast cancer


    CLEC10A for disorders           About GeneDecksing

    Genetic Association Database (GAD): CLEC10A
    Human Genome Epidemiology (HuGE) Navigator: CLEC10A (2 documents)

    Export disorders for CLEC10A gene to outside databases

    Publications
    for CLEC10A gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    TryGeneCards Plus
    PubMed articles for CLEC10A gene, integrated from 10 sources (see all 17):
    (articles sorted by number of sources associating them with CLEC10A)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Molecular cloning and expression of cDNA encoding human macrophage c- type lectin: its unique carbohydrate binding specificity for Tn antigen. (PubMed id 8598452)1, 2, 3, 9 Suzuki N.... Irimura T. (J. Immunol. 1996)
    2. Single nucleotide polymorphism of TAG-1 influences IVIg responsiveness of Japanese patients with CIDP. (PubMed id 19776380)1, 4 Iijima M....Sobue G. (Neurology 2009)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. Human T cell activation results in extracellular signal-regulated kinase (ERK)-calcineurin-dependent exposure of Tn antigen on the cell surface and binding of the macrophage galactose-type lectin (MGL). (PubMed id 23918927)1 van Vliet S.J....van Kooyk Y. (J. Biol. Chem. 2013)
    5. MGL signaling augments TLR2-mediated responses for enhanced IL-10 and TNF-I+ secretion. (PubMed id 23744646)1 van Vliet S.J....van Kooyk Y. (J. Leukoc. Biol. 2013)
    6. Protein domain histochemistry (PDH): binding of the carbohydrate recognition domain (CRD) of recombinant human glycoreceptor CLEC10A (CD301) to formalin-fixed, paraffin-embedded breast cancer tissues. (PubMed id 23275449)1 Nollau P....Wagener C. (J. Histochem. Cytochem. 2013)
    7. Targeting of macrophage galactose-type C-type lectin (MGL) induces DC signaling and activation. (PubMed id 22531918)1 Napoletano C....Nuti M. (Eur. J. Immunol. 2012)
    8. New genetic associations detected in a host response study to hepatitis B vaccine. (PubMed id 20237496)1 Davila S....Seielstad M. (Genes Immun. 2010)
    9. Variation of Neisseria gonorrhoeae lipooligosaccharide directs dendritic cell-induced T helper responses. (PubMed id 19834553)1 van Vliet S.J....van Kooyk Y. (PLoS Pathog. 2009)
    10. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)

    External Searches for CLEC10A gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

    TryGeneCards Plus
     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing CLEC10A gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section

    TryGeneCards Plus
    Entrez Gene: 10462 HGNC: 16916 AceView: CLECSF14 Ensembl:ENSG00000132514 euGenes: HUgn10462
    ECgene: CLEC10A H-InvDB: CLEC10A

    Other Databases showing CLEC10A gene

    (According to HUGE)
    About This Section

    TryGeneCards Plus    		   --

    Specialized Databases showing CLEC10A gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
    About This Section

    TryGeneCards Plus
    NameDescription
    PharmGKB entry for CLEC10A Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for CLEC10A Genetics and Cytogenetics in Oncology and Haematology
    Functional Glycomics Gateway - Glycan Bindinghttp://www.functionalglycomics.org/glycomics/GBPServlet?&operationType=view&cbpId=cbp_hum_Ctlect_217

    Intellectual Property
    for CLEC10A gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section

    TryGeneCards Plus    		Patent Information for CLEC10A gene:
    Search GeneIP for patents involving CLEC10A

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    Products
    for CLEC10A gene

    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

    TryGeneCards Plus
     
     EMD Millipore genomic analysis products

      
     Antibodies for CLEC10A (CLEC10A/CD301)   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Enzyme Activity Assays/Reagents  
     Browse ELISpot/FluoroSpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Luminex Assays  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Recombinant/Natural Proteins for CLEC10A (CLEC10A/CD301)   Browse Stem Cell Products  
     Browse cDNA Clones   Browse Proteome Profiler Antibody Arrays  
     OriGene Antibodies for CLEC10A   OriGene RNAi products in human, mouse, rat for CLEC10A  
     Browse OriGene qPCR primer pairs and template standards   OriGene Protein Over-expression Lysate for CLEC10A  
     OriGene MassSpec something-or-other for CLEC10A   OriGene clones in human, mouse for CLEC10A  
     OriGene qSTAR qPCR primer pairs in human, mouse for CLEC10A   OriGene Purified Protein for CLEC10A  
     OriGene ORF clones in mouse, rat for CLEC10A   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for CLEC10A   OriGene Custom Protein Services for CLEC10A  

         		 
     Block miRNA regulation of human, mouse, rat CLEC10A using miScript Target Protectors SeqTarget long-range PCR primers for resequencing CLEC10A
     DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CLEC10A Predesigned siRNA for gene silencing in human, mouse, rat CLEC10A
     QuantiFast Probe-based Assays in human, mouse, rat CLEC10A QuantiTect SYBR Green Assays in human, mouse, rat CLEC10A
     Custom PCR Arrays for CLEC10A Search Chromatin IP Primers for CLEC10A
     Pre-validated RT2 qPCR Primer Assay in human, mouse, rat CLEC10A  Search GeneGlobe Interaction Network for CLEC10A
     Regulatory tfbs in CLEC10A promoter
     GenScript Custom Purified and Recombinant Proteins Services for CLEC10A GenScript cDNA clones with any tag delivered in your preferred vector for CLEC10A
     GenScript Custom Assay Services for CLEC10A GenScript Custom overexpressing Cell Line Services for CLEC10A
     CloneReady with Over 120,000 Genes  Gene Synthesis: Any Gene in Any Vector
     Vector-based siRNA and miRNA, Ready for Transfection Gene Mutant Library, Variants up to 10^11
     Plasmid Preparation Custom Peptide Services
     Search for Antibodies & Assays

     Search Tocris compounds for CLEC10A (CLC10)
     Proteins for CLEC10A
     Cell Lysates for CLEC10A
     cDNA Clones for CLEC10A
     4000+ Proteins
     Search Sino Biological for antibodies, proteins & pathways
     Protein Production Services
     Transfection Reagents
     Protein A/G/L resins
     Isotyping reagents
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

     Novus Tissue Slides
     CLEC10A antibodies
     CLEC10A proteins
     CLEC10A lysates
     Antibodies for CLEC10A
     See all of Abcam's Antibodies, Kits and Proteins for CLEC10A
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins
     Proteins for CLEC10A
     Antibodies for CLEC10A
     ELISAs for CLEC10A
     CLIAs for CLEC10A



     Browse ESI BIO Cell Lines and PureStem Progenitors for CLEC10A
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CLEC10A
     SwitchGear 3'UTR luciferase reporter plasmids for CLEC10A
     SwitchGear Promoter luciferase reporter plasmids for CLEC10A
     ThermoFisher Antibodies for CLEC10A
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CLEC10A
     inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for CLEC10A
     inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for CLEC10A
     LSBio Antibodies in human, mouse, rat for CLEC10A
    Customized transgenic rodents for:
     Humanization
     Biomarker expression
     Off-target effect monitoring
     Translational medicine
     Tissue-specific gene expresssion
     Time-controlled gene expresssion
     Browse compounds at ApexBio
           
    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

    View Random Gene

    Category
    (GIFtS: )
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 

    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Copyright © 1996-2014 , Weizmann Institute of Science. All Rights Reserved.
    Hot genes      Disease genes      CLEC10A gene at Home site.
    Version: 3.12.136 22 July 2014
    hostname: 356980-web2.xennexinc.com index build: 126 solr: 1.4