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Aliases for CLDN25 Gene

Aliases for CLDN25 Gene

  • Claudin 25 2 3 5

External Ids for CLDN25 Gene

Previous GeneCards Identifiers for CLDN25 Gene

  • GC11P113158
  • GC11P113650
  • GC11P109579

Summaries for CLDN25 Gene

Entrez Gene Summary for CLDN25 Gene

  • This gene encodes a member of the claudin family. Claudins are integral membrane proteins and components of tight junction strands. Tight junction strands serve as a physical barrier to prevent solutes and water from passing freely through the paracellular space between epithelial or endothelial cell sheets, and also play critical roles in maintaining cell polarity and signal transductions. [provided by RefSeq, Jun 2010]

GeneCards Summary for CLDN25 Gene

CLDN25 (Claudin 25) is a Protein Coding gene. Among its related pathways are Tight junction and Blood-Brain Barrier and Immune Cell Transmigration: VCAM-1/CD106 Signaling Pathways. GO annotations related to this gene include structural molecule activity. An important paralog of this gene is CLDN18.

UniProtKB/Swiss-Prot for CLDN25 Gene

  • Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLDN25 Gene

Genomics for CLDN25 Gene

Genomic Location for CLDN25 Gene

Chromosome:
11
Start:
113,779,747 bp from pter
End:
113,780,500 bp from pter
Size:
754 bases
Orientation:
Plus strand

Genomic View for CLDN25 Gene

Genes around CLDN25 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLDN25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLDN25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLDN25 Gene

No data available for Regulatory Elements for CLDN25 Gene

Proteins for CLDN25 Gene

  • Protein details for CLDN25 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    C9JDP6-CLD25_HUMAN
    Recommended name:
    Putative claudin-25
    Protein Accession:
    C9JDP6

    Protein attributes for CLDN25 Gene

    Size:
    229 amino acids
    Molecular mass:
    25394 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CLDN25 Gene

Proteomics data for CLDN25 Gene at MOPED

Post-translational modifications for CLDN25 Gene

No Post-translational modifications

Other Protein References for CLDN25 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CLDN25 Gene

Domains & Families for CLDN25 Gene

Gene Families for CLDN25 Gene

Protein Domains for CLDN25 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CLDN25 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

C9JDP6

UniProtKB/Swiss-Prot:

CLD25_HUMAN :
  • Belongs to the claudin family.
Family:
  • Belongs to the claudin family.
genes like me logo Genes that share domains with CLDN25: view

Function for CLDN25 Gene

Molecular function for CLDN25 Gene

UniProtKB/Swiss-Prot Function:
Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity.

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLDN25 Gene

Localization for CLDN25 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CLDN25 Gene

Cell junction, tight junction. Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CLDN25 Gene COMPARTMENTS Subcellular localization image for CLDN25 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for CLDN25 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA --
genes like me logo Genes that share ontologies with CLDN25: view

Pathways & Interactions for CLDN25 Gene

genes like me logo Genes that share pathways with CLDN25: view

Pathways by source for CLDN25 Gene

Interacting Proteins for CLDN25 Gene

Gene Ontology (GO) - Biological Process for CLDN25 Gene

None

No data available for SIGNOR curated interactions for CLDN25 Gene

Drugs & Compounds for CLDN25 Gene

No Compound Related Data Available

Transcripts for CLDN25 Gene

mRNA/cDNA for CLDN25 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CLDN25 Gene

No ASD Table

Relevant External Links for CLDN25 Gene

GeneLoc Exon Structure for
CLDN25
ECgene alternative splicing isoforms for
CLDN25

Expression for CLDN25 Gene

mRNA expression in normal human tissues for CLDN25 Gene

mRNA differential expression in normal tissues according to GTEx for CLDN25 Gene

This gene is overexpressed in Pituitary (x22.4), Muscle - Skeletal (x8.8), Testis (x5.4), Skin - Sun Exposed (Lower leg) (x5.0), and Liver (x4.4).

SOURCE GeneReport for Unigene cluster for CLDN25 Gene Hs.705360

genes like me logo Genes that share expression patterns with CLDN25: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CLDN25 Gene

Orthologs for CLDN25 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CLDN25 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CLDN25 36
  • 99 (a)
OneToOne
CLDN25 35
  • 99.42 (n)
  • 99.13 (a)
cow
(Bos Taurus)
Mammalia CLDN25 35
  • 85.74 (n)
  • 81.66 (a)
CLDN25 36
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CLDN25 36
  • 82 (a)
OneToOne
CLDN25 35
  • 86.11 (n)
  • 82.46 (a)
mouse
(Mus musculus)
Mammalia Cldn13 36
  • 27 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia CLDN25 36
  • 59 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC100360390 35
  • 80.79 (n)
  • 76.42 (a)
chicken
(Gallus gallus)
Aves CLDN25 35
  • 59.1 (n)
  • 51.53 (a)
CLDN25 36
  • 51 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CLDN25 36
  • 43 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii CLDN22 36
  • 35 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 22 (a)
ManyToMany
CSA.10090 36
  • 25 (a)
ManyToMany
Species with no ortholog for CLDN25:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CLDN25 Gene

ENSEMBL:
Gene Tree for CLDN25 (if available)
TreeFam:
Gene Tree for CLDN25 (if available)

Paralogs for CLDN25 Gene

Paralogs for CLDN25 Gene

(13) SIMAP similar genes for CLDN25 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CLDN25: view

Variants for CLDN25 Gene

Sequence variations from dbSNP and Humsavar for CLDN25 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs35111413 - 113,780,450(+) CCTTC(C/T)ACCTC reference, missense
rs17115958 -- 113,779,918(+) CTGAA(C/T)GAGAT reference, synonymous-codon
rs34214895 -- 113,777,935(+) ACGCC(-/G)GGTCC upstream-variant-2KB
rs77229295 -- 113,778,556(+) GGAGG(A/G)AGCAC upstream-variant-2KB
rs71880923 -- 113,778,792(+) ATATA(-/CACACACACACG)CACAC upstream-variant-2KB

Variation tolerance for CLDN25 Gene

Residual Variation Intolerance Score: 45.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.96; 19.76% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CLDN25 Gene

HapMap Linkage Disequilibrium report
CLDN25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CLDN25 Gene

Disorders for CLDN25 Gene

Relevant External Links for CLDN25

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CLDN25

No disorders were found for CLDN25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLDN25 Gene

Publications for CLDN25 Gene

  1. The claudins. (PMID: 19706201) Lal-Nag M. … Morin P.J. (Genome Biol. 2009) 3 67
  2. Structure and function of claudins. (PMID: 18036336) Krause G. … Blasig I.E. (Biochim. Biophys. Acta 2008) 3
  3. CLDN23 gene, frequently down-regulated in intestinal-type gastric cancer, is a novel member of CLAUDIN gene family. (PMID: 12736707) Katoh M. … Katoh M. (Int. J. Mol. Med. 2003) 3
  4. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3

Products for CLDN25 Gene

Sources for CLDN25 Gene

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