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CLDN25 Gene

protein-coding   GIFtS: 34
GCID: GC11P113650

Claudin 25

  Search for CLDN25
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Claudin 251 2
Putative Claudin-252

External Ids:    HGNC: 372181   Entrez Gene: 6446722   Ensembl: ENSG000002286077   UniProtKB: C9JDP63   

Export aliases for CLDN25 gene to outside databases

Previous GC identifers: GC11P113158 GC11P109579


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for CLDN25 Gene:
This gene encodes a member of the claudin family. Claudins are integral membrane proteins and components of tight
junction strands. Tight junction strands serve as a physical barrier to prevent solutes and water from passing
freely through the paracellular space between epithelial or endothelial cell sheets, and also play critical roles
in maintaining cell polarity and signal transductions. (provided by RefSeq, Jun 2010)

GeneCards Summary for CLDN25 Gene:
CLDN25 (claudin 25) is a protein-coding gene. GO annotations related to this gene include structural molecule activity. An important paralog of this gene is ENSG00000262302.

UniProtKB/Swiss-Prot: CLD25_HUMAN, C9JDP6
Function: Plays a major role in tight junction-specific obliteration of the intercellular space, through
calcium-independent cell-adhesion activity (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for CLDN25
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CLDN25


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q23.2   Ensembl cytogenetic band:  11q23.2   HGNC cytogenetic band: 11q23.2

CLDN25 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CLDN25 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P113650:  view genomic region     (about GC identifiers)

Start:
113,650,469 bp from pter      End:
113,651,222 bp from pter
Size:
754 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
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UniProtKB/Swiss-Prot: CLD25_HUMAN, C9JDP6 (See protein sequence)
Recommended Name: Putative claudin-25  
Size: 229 amino acids; 25394 Da
Caution: Could be the product of a pseudogene

Explore the universe of human proteins at neXtProt for CLDN25: NX_C9JDP6

REFSEQ proteins: NP_001094859.1  
ENSEMBL proteins: 
 ENSP00000396304  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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2 InterPro protein domains:
 IPR006187 Claudin
 IPR004031 PMP22/EMP/MP20/Claudin

Graphical View of Domain Structure for InterPro Entry C9JDP6

ProtoNet protein and cluster: C9JDP6

UniProtKB/Swiss-Prot: CLD25_HUMAN, C9JDP6
Similarity: Belongs to the claudin family


Find genes that share domains with CLDN25           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: CLD25_HUMAN, C9JDP6
Function: Plays a major role in tight junction-specific obliteration of the intercellular space, through
calcium-independent cell-adhesion activity (By similarity)

     Gene Ontology (GO): 1 molecular function term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005198structural molecule activity IEA--
     
Find genes that share ontologies with CLDN25           About GenesLikeMe


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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
CLD25_HUMAN, C9JDP6: Cell junction, tight junction (By similarity). Cell membrane; Multi-pass membrane protein
(By similarity)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
plasma membrane5

Gene Ontology (GO): 3 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005886plasma membrane IEA--
GO:0005923tight junction IEA--
GO:0016021integral component of membrane IEA--

Find genes that share ontologies with CLDN25           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for CLDN25 About    
See pathways by source

SuperPathContained pathways About
1Tight junction
Tight junction
2Leukocyte transendothelial migration
Leukocyte transendothelial migration
3Hepatitis C
Hepatitis C
4Cell adhesion molecules (CAMs)
Cell adhesion molecules (CAMs)


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Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways



4 Kegg Pathways  (Kegg details for CLDN25):
    Cell adhesion molecules (CAMs)
Tight junction
Leukocyte transendothelial migration
Hepatitis C

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Interactions:

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for CLDN25 gene: 
NM_001101389.1  

1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000453129(uc009yyw.1)
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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CLDN25 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: CTAAGACCTA
CLDN25 Expression
About this image

CLDN25 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
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In Situ
Assay Products:
 

 
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for CLDN25 gene from Selected species (see all 10)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chicken
(Gallus gallus)
Aves CLDN251 claudin 25 59.1(n)
51.53(a)
  428245  XM_004948061.1  XP_004948118.1 
lizard
(Anolis carolinensis)
Reptilia CLDN256
claudin 25
43(a)
1 ↔ 1
GL343354.1(260845-261495)
zebrafish
(Danio rerio)
Actinopterygii CLDN226
claudin 22
35(a)
1 → many
5(13915604-13916266) ENSDARG00000076137
        Species with no ortholog for CLDN25

ENSEMBL Gene Tree for CLDN25 (if available)
TreeFam Gene Tree for CLDN25 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for CLDN25 gene
ENSG000002623022  CLDN102  CLDN182  CLDN152  CLDN242  CLDN222  
13 SIMAP similar genes for CLDN25 using alignment to 1 protein entry:     CLD25_HUMAN:
CLDN22    CLDN24    CLDN8    CLDN14    CLDN17    CLDN1
CLDN2    CLDN4    CLDN3    CLDN5    CLDN6    CLDN9
CLDN7

Find genes that share paralogs with CLDN25           About GenesLikeMe



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for CLDN25 (see all 91)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 11 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1450954861,2
--109577048(+) TATGAC/TGTAGA 1 -- us2k10--------
rs1872875681,2
--113648525(+) TTCACA/GTGTTT 1 -- us2k10--------
rs1910826241,2
--113648629(+) GGTGCC/TGGTGC 1 -- us2k10--------
rs759809841,2
C--113648702(+) CTGTGC/TCTTAT 1 -- us2k10--------
rs1405751501,2
--113648855(+) GGGAAA/GCACAT 1 -- us2k10--------
rs1815393981,2
--113648913(+) GTCTCA/GCTATA 1 -- us2k10--------
rs1504406601,2
--113649105(+) AAATAC/TGGATA 1 -- us2k10--------
rs1381302261,2
--113649144(+) GCCGTA/GCTCAG 1 -- us2k10--------
rs1129874221,2
F--113649145(+) CCGTAC/GTCAGT 1 -- us2k12Minor allele frequency- G:0.04CSA WA 120
rs1160474341,2
F--113649148(+) TACTCA/TGTAAA 1 -- us2k11Minor allele frequency- T:0.03WA 118

HapMap Linkage Disequilibrium report for CLDN25 (113650469 - 113651222 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for CLDN25: --
Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing CLDN25
DNA2.0 Custom Variant and Variant Library Synthesis for CLDN25

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for CLDN25 gene integrated from 10 sources:
(articles sorted by number of sources associating them with CLDN25)
    Utopia: connect your pdf to the dynamic
world of online information

  1. The claudins. (PubMed id 19706201)1 Lal-Nag M. and Morin P.J. (Genome Biol. 2009)
  2. Structure and function of claudins. (PubMed id 18036336)1 Krause G....Blasig I.E. (Biochim. Biophys. Acta 2008)
  3. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811)2 Taylor T.D....Sakaki Y. (Nature 2006)
  4. CLDN23 gene, frequently down-regulated in intestinal-type gastric cancer, is a novel member of CLAUDIN gene family. (PubMed id 12736707)1 Katoh M. and Katoh M. (Int. J. Mol. Med. 2003)
  5. The sequence of the human genome. (PubMed id 11181995)1 Venter J.C.... Zhu X. (Science 2001)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 644672 HGNC: 37218 Ensembl:ENSG00000228607 euGenes: HUgn644672 ECgene: CLDN25 Kegg: 644672
H-InvDB: CLDN25

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for CLDN25 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for CLDN25 gene:
Search GeneIP for patents involving CLDN25

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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The GeneCards human gene database gene index: 1 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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