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Aliases for CLDN10-AS1 Gene

Subcategory (RNA class) for CLDN10-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CLDN10-AS1 Gene

  • CLDN10 Antisense RNA 1 2 3 5
  • CLDN10 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for CLDN10-AS1 Gene

Previous GeneCards Identifiers for CLDN10-AS1 Gene

  • GC00U933053
  • GC13M096132

Summaries for CLDN10-AS1 Gene

GeneCards Summary for CLDN10-AS1 Gene

CLDN10-AS1 (CLDN10 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLDN10-AS1 Gene

Genomics for CLDN10-AS1 Gene

Regulatory Elements for CLDN10-AS1 Gene

Enhancers for CLDN10-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G095524 0.6 ENCODE 30.7 +9.4 9429 0.2 MAFG CEBPB CEBPG ZNF316 MAFF NFE2L1 NFE2 MAFK EMSY NFE2L2 CLDN10-AS1 CLDN10
GH13G095509 0.8 Ensembl ENCODE 12.6 +24.1 24054 1.0 MAX FOS PRDM1 SPI1 CLDN10-AS1 CLDN10
GH13G095534 1 ENCODE 9 -1.1 -1108 2.0 PKNOX1 FOXA2 ARID4B GLI4 ZNF2 GLIS2 GATA2 FOS ZNF202 YY2 TGDS ABCC4 CLDN10 CLDN10-AS1 GC13P095540
GH13G095554 0.5 Ensembl 5.8 -20.3 -20291 0.4 FOXA2 SMARCA4 RNF2 EZH2 FOXA1 CLDN10-AS1 UGGT2 GC13P095540 GC13M095580
GH13G095530 0.7 ENCODE 0.7 +3.5 3539 0.3 SOX13 FOXA2 SAP130 FOXA3 CEBPB MAX CEBPG HMG20A ZNF644 GATA2 CLDN10-AS1 CLDN10
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CLDN10-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CLDN10-AS1 Gene

Chromosome:
13
Start:
95,479,444 bp from pter
End:
95,533,910 bp from pter
Size:
54,467 bases
Orientation:
Minus strand

Genomic View for CLDN10-AS1 Gene

Genes around CLDN10-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLDN10-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLDN10-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLDN10-AS1 Gene

Proteins for CLDN10-AS1 Gene

Post-translational modifications for CLDN10-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLDN10-AS1 Gene

Domains & Families for CLDN10-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CLDN10-AS1 Gene

Function for CLDN10-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLDN10-AS1 Gene

Localization for CLDN10-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CLDN10-AS1 Gene

Pathways & Interactions for CLDN10-AS1 Gene

SuperPathways for CLDN10-AS1 Gene

No Data Available

Interacting Proteins for CLDN10-AS1 Gene

Gene Ontology (GO) - Biological Process for CLDN10-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CLDN10-AS1 Gene

Transcripts for CLDN10-AS1 Gene

mRNA/cDNA for CLDN10-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CLDN10-AS1 Gene

CLDN10 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CLDN10-AS1 Gene

No ASD Table

Relevant External Links for CLDN10-AS1 Gene

GeneLoc Exon Structure for
CLDN10-AS1
ECgene alternative splicing isoforms for
CLDN10-AS1

Expression for CLDN10-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CLDN10-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CLDN10-AS1 Gene

This gene is overexpressed in Kidney - Cortex (x10.5), Pancreas (x10.5), Minor Salivary Gland (x9.9), Cervix - Endocervix (x5.9), Skin - Not Sun Exposed (Suprapubic) (x5.8), and Skin - Sun Exposed (Lower leg) (x5.6).

SOURCE GeneReport for Unigene cluster for CLDN10-AS1 Gene:

Hs.569229
genes like me logo Genes that share expression patterns with CLDN10-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLDN10-AS1 Gene

Orthologs for CLDN10-AS1 Gene

Evolution for CLDN10-AS1 Gene

ENSEMBL:
Gene Tree for CLDN10-AS1 (if available)
TreeFam:
Gene Tree for CLDN10-AS1 (if available)

No data available for Orthologs for CLDN10-AS1 Gene

Paralogs for CLDN10-AS1 Gene

No data available for Paralogs for CLDN10-AS1 Gene

Variants for CLDN10-AS1 Gene

Sequence variations from dbSNP and Humsavar for CLDN10-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000112305 -- 95,517,354(+) TGTTG(A/G)GGTAG intron-variant
rs1000194890 -- 95,535,657(+) GTCCC(A/G)TAGGC intron-variant, upstream-variant-2KB
rs1000364667 -- 95,509,705(+) AGTCC(C/G/T)CTCTG intron-variant
rs1000379962 -- 95,488,621(+) TTTGG(G/T)TTTCC intron-variant
rs1000417666 -- 95,494,770(+) AGATA(C/T)GGACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CLDN10-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2747847 CNV deletion 23290073
esv3550921 CNV deletion 23714750
nsv1043019 CNV gain 25217958
nsv525760 CNV loss 19592680
nsv7246 OTHER inversion 18451855

Relevant External Links for CLDN10-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLDN10-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CLDN10-AS1 Gene

Disorders for CLDN10-AS1 Gene

Relevant External Links for CLDN10-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CLDN10-AS1

No disorders were found for CLDN10-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLDN10-AS1 Gene

Publications for CLDN10-AS1 Gene

No publications were found for CLDN10-AS1 Gene.

Products for CLDN10-AS1 Gene

Sources for CLDN10-AS1 Gene

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