Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CLASP2 Gene

Aliases for CLASP2 Gene

  • Cytoplasmic Linker Associated Protein 2 2 3 5
  • Cytoplasmic Linker-Associated Protein 2 4
  • Protein Orbit Homolog 2 4
  • KIAA0627 4
  • HOrbit2 4

External Ids for CLASP2 Gene

Previous GeneCards Identifiers for CLASP2 Gene

  • GC03M032843
  • GC03M033384
  • GC03M033510
  • GC03M033509
  • GC03M033513
  • GC03M033512

Summaries for CLASP2 Gene

GeneCards Summary for CLASP2 Gene

CLASP2 (Cytoplasmic Linker Associated Protein 2) is a Protein Coding gene. Diseases associated with CLASP2 include Clostridium Difficile Colitis. Among its related pathways are DNA Damage and Cell Cycle, Mitotic. GO annotations related to this gene include binding and microtubule plus-end binding. An important paralog of this gene is CLASP1.

UniProtKB/Swiss-Prot for CLASP2 Gene

  • Microtubule plus-end tracking protein that promotes the stabilization of dynamic microtubules (PubMed:26003921). Involved in the nucleation of noncentrosomal microtubules originating from the trans-Golgi network (TGN). Required for the polarization of the cytoplasmic microtubule arrays in migrating cells towards the leading edge of the cell. May act at the cell cortex to enhance the frequency of rescue of depolymerizing microtubules by attaching their plus-ends to cortical platforms composed of ERC1 and PHLDB2 (PubMed:16824950). This cortical microtubule stabilizing activity is regulated at least in part by phosphatidylinositol 3-kinase signaling. Also performs a similar stabilizing function at the kinetochore which is essential for the bipolar alignment of chromosomes on the mitotic spindle (PubMed:16866869, PubMed:16914514). Acts as a mediator of ERBB2-dependent stabilization of microtubules at the cell cortex.

Gene Wiki entry for CLASP2 Gene

Additional gene information for CLASP2 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLASP2 Gene

Genomics for CLASP2 Gene

Regulatory Elements for CLASP2 Gene

Enhancers for CLASP2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H033790 1.7 FANTOM5 Ensembl ENCODE 15.4 -73.0 -72966 2 PKNOX1 ATF1 ARNT TCF12 ZNF766 CBX5 GATA2 ELK1 FOS ATF7 PDCD6IP CLASP2 ENSG00000271643 ENSG00000271324 SDAD1P3
GH03H033577 1.4 FANTOM5 Ensembl ENCODE 12.8 +139.8 139788 2 SOX13 FOXA2 JUN CEBPG TEAD3 ZNF316 POLR2A FOS HOMEZ MAFK FBXL2 CLASP2 UBP1 COX6CP10 GC03M033644
GH03H033657 1.3 ENCODE dbSUPER 11.7 +58.9 58941 2 PKNOX1 ATF1 ARNT SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 GATA2 CNOT10 CLASP2 UBP1 GC03M033663 GC03M033664 GC03M033644
GH03H033746 0.8 FANTOM5 Ensembl 19 -28.3 -28345 0 HLF CEBPG SPI1 CLASP2 PDCD6IP ENSG00000228112 SDAD1P3
GH03H033787 1.1 Ensembl ENCODE 11.1 -69.0 -69045 0 CTCF RB1 ARNT ARID4B THRB RAD21 CHAMP1 RFX5 CC2D1A CTBP1 CLASP2 UBP1 PDCD6IP ENSG00000271324 SDAD1P3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CLASP2 on UCSC Golden Path with GeneCards custom track

Promoters for CLASP2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000150658 456 2600 HDGF FOXA2 ARNT ZFP64 ARID4B SIN3A ZNF2 YY1 CBX5 ZNF143

Genomic Location for CLASP2 Gene

Chromosome:
3
Start:
33,496,245 bp from pter
End:
33,718,356 bp from pter
Size:
222,112 bases
Orientation:
Minus strand

Genomic View for CLASP2 Gene

Genes around CLASP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLASP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLASP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLASP2 Gene

Proteins for CLASP2 Gene

  • Protein details for CLASP2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O75122-CLAP2_HUMAN
    Recommended name:
    CLIP-associating protein 2
    Protein Accession:
    O75122
    Secondary Accessions:
    • B2RTR1
    • F5H604
    • Q7L8F6
    • Q8N6R6
    • Q9BQT3
    • Q9BQT4
    • Q9H7A3
    • Q9NSZ2

    Protein attributes for CLASP2 Gene

    Size:
    1294 amino acids
    Molecular mass:
    141133 Da
    Quaternary structure:
    • Interacts with microtubules (PubMed:11290329, PubMed:15631994, PubMed:15955847, PubMed:26003921). Interacts with MAPRE1; probably required for targeting to the growing microtubule plus ends (PubMed:15631994, PubMed:19632184, PubMed:26003921). Interacts with CLIP2, ERC1, MAPRE3, PHLDB2 and RSN (PubMed:11290329, PubMed:15631994). The interaction with ERC1 may be mediated by PHLDB2 (PubMed:16824950). Interacts with GCC2; recruits CLASP2 to Golgi membranes (PubMed:17543864). Interacts with MACF1 (By similarity).
    SequenceCaution:
    • Sequence=BAA31602.2; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=BAB14995.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for CLASP2 Gene

    Alternative splice isoforms for CLASP2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CLASP2 Gene

Post-translational modifications for CLASP2 Gene

  • Phosphorylated by GSK3B. Phosphorylation reduces MAPRE1 binding (PubMed:26003921). Phosphorylation by GSK3B may negatively regulate binding to microtubule lattices in lamella.
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CLASP2 Gene

Domains & Families for CLASP2 Gene

Gene Families for CLASP2 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CLASP2 Gene

Graphical View of Domain Structure for InterPro Entry

O75122

UniProtKB/Swiss-Prot:

CLAP2_HUMAN :
  • The two SXIP sequence motifs mediate interaction with MAPRE1; this is necessary for targeting to growing microtubule plus ends.
  • Belongs to the CLASP family.
Domain:
  • The two SXIP sequence motifs mediate interaction with MAPRE1; this is necessary for targeting to growing microtubule plus ends.
  • Two TOG regions display structural characteristics similar to HEAT repeat domains and mediate interaction with microtubules.
Family:
  • Belongs to the CLASP family.
genes like me logo Genes that share domains with CLASP2: view

Function for CLASP2 Gene

Molecular function for CLASP2 Gene

UniProtKB/Swiss-Prot Function:
Microtubule plus-end tracking protein that promotes the stabilization of dynamic microtubules (PubMed:26003921). Involved in the nucleation of noncentrosomal microtubules originating from the trans-Golgi network (TGN). Required for the polarization of the cytoplasmic microtubule arrays in migrating cells towards the leading edge of the cell. May act at the cell cortex to enhance the frequency of rescue of depolymerizing microtubules by attaching their plus-ends to cortical platforms composed of ERC1 and PHLDB2 (PubMed:16824950). This cortical microtubule stabilizing activity is regulated at least in part by phosphatidylinositol 3-kinase signaling. Also performs a similar stabilizing function at the kinetochore which is essential for the bipolar alignment of chromosomes on the mitotic spindle (PubMed:16866869, PubMed:16914514). Acts as a mediator of ERBB2-dependent stabilization of microtubules at the cell cortex.

Gene Ontology (GO) - Molecular Function for CLASP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002162 dystroglycan binding IPI 23940118
GO:0005515 protein binding IPI 11290329
GO:0008017 microtubule binding IDA 26003921
GO:0051010 microtubule plus-end binding IDA 11290329
genes like me logo Genes that share ontologies with CLASP2: view
genes like me logo Genes that share phenotypes with CLASP2: view

Animal Models for CLASP2 Gene

MGI Knock Outs for CLASP2:

Animal Model Products

CRISPR Products

miRNA for CLASP2 Gene

miRTarBase miRNAs that target CLASP2

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CLASP2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CLASP2 Gene

Localization for CLASP2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CLASP2 Gene

Cytoplasm, cytoskeleton. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome. Chromosome, centromere, kinetochore. Cytoplasm, cytoskeleton, spindle. Golgi apparatus. Golgi apparatus, trans-Golgi network. Cell membrane. Cell projection, ruffle membrane. Note=Localizes to microtubule plus ends (PubMed:15631994). Localizes to centrosomes, kinetochores and the mitotic spindle from prometaphase. Subsequently localizes to the spindle midzone from anaphase and to the midbody from telophase (PubMed:16866869, PubMed:16914514). In migrating cells localizes to the plus ends of microtubules within the cell body and to the entire microtubule lattice within the lamella. Localizes to the cell cortex and this requires ERC1 and PHLDB2 (PubMed:16824950). The MEMO1-RHOA-DIAPH1 signaling pathway controls localization of the phosphorylated form to the cell membrane. {ECO:0000269 PubMed:15631994, ECO:0000269 PubMed:16824950, ECO:0000269 PubMed:16866869, ECO:0000269 PubMed:16914514, ECO:0000269 PubMed:20937854}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CLASP2 gene
Compartment Confidence
plasma membrane 5
cytoskeleton 5
cytosol 5
golgi apparatus 5
nucleus 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Golgi apparatus (3)
  • Cytosol (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for CLASP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000775 chromosome, centromeric region IEA --
GO:0000776 colocalizes_with kinetochore IMP 16866869
GO:0000777 condensed chromosome kinetochore IEA --
GO:0005694 chromosome IEA --
GO:0005737 cytoplasm NAS 11290329
genes like me logo Genes that share ontologies with CLASP2: view

Pathways & Interactions for CLASP2 Gene

genes like me logo Genes that share pathways with CLASP2: view

Pathways by source for CLASP2 Gene

1 Cell Signaling Technology pathway for CLASP2 Gene
1 Qiagen pathway for CLASP2 Gene

Gene Ontology (GO) - Biological Process for CLASP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000226 microtubule cytoskeleton organization IMP 24859005
GO:0006903 vesicle targeting IMP 24859005
GO:0007020 microtubule nucleation IMP 17543864
GO:0007026 negative regulation of microtubule depolymerization NAS 11290329
GO:0007030 Golgi organization IMP 24859005
genes like me logo Genes that share ontologies with CLASP2: view

No data available for SIGNOR curated interactions for CLASP2 Gene

Drugs & Compounds for CLASP2 Gene

No Compound Related Data Available

Transcripts for CLASP2 Gene

Unigene Clusters for CLASP2 Gene

Cytoplasmic linker associated protein 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CLASP2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CLASP2 Gene

No ASD Table

Relevant External Links for CLASP2 Gene

GeneLoc Exon Structure for
CLASP2
ECgene alternative splicing isoforms for
CLASP2

Expression for CLASP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CLASP2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for CLASP2 Gene

This gene is overexpressed in Frontal cortex (14.2), Fetal Brain (11.9), Lung (7.5), Brain (6.9), and Peripheral blood mononuclear cells (6.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CLASP2 Gene



Protein tissue co-expression partners for CLASP2 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CLASP2 Gene:

CLASP2

SOURCE GeneReport for Unigene cluster for CLASP2 Gene:

Hs.108614

mRNA Expression by UniProt/SwissProt for CLASP2 Gene:

O75122-CLAP2_HUMAN
Tissue specificity: Brain-specific.

Evidence on tissue expression from TISSUES for CLASP2 Gene

  • Nervous system(5)
  • Liver(4.2)
  • Blood(4.1)
genes like me logo Genes that share expression patterns with CLASP2: view

Primer Products

No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLASP2 Gene

Orthologs for CLASP2 Gene

This gene was present in the common ancestor of animals.

Orthologs for CLASP2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CLASP2 33 34
  • 99.4 (n)
dog
(Canis familiaris)
Mammalia CLASP2 33 34
  • 95.21 (n)
cow
(Bos Taurus)
Mammalia CLASP2 33 34
  • 94.17 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia CLASP2 34
  • 92 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Clasp2 33
  • 90.25 (n)
mouse
(Mus musculus)
Mammalia Clasp2 33 16 34
  • 89.56 (n)
oppossum
(Monodelphis domestica)
Mammalia CLASP2 34
  • 77 (a)
OneToOne
chicken
(Gallus gallus)
Aves CLASP2 33 34
  • 81.22 (n)
lizard
(Anolis carolinensis)
Reptilia CLASP2 34
  • 83 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii clasp2 33 34
  • 68.59 (n)
Dr.14760 33
fruit fly
(Drosophila melanogaster)
Insecta chb 34
  • 29 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea cls-2 33 34
  • 44.23 (n)
cls-3 34
  • 25 (a)
ManyToMany
cls-1 34
  • 21 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.3398 34
  • 41 (a)
OneToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.12093 33
Species where no ortholog for CLASP2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for CLASP2 Gene

ENSEMBL:
Gene Tree for CLASP2 (if available)
TreeFam:
Gene Tree for CLASP2 (if available)

Paralogs for CLASP2 Gene

Paralogs for CLASP2 Gene

Pseudogenes.org Pseudogenes for CLASP2 Gene

genes like me logo Genes that share paralogs with CLASP2: view

Variants for CLASP2 Gene

Sequence variations from dbSNP and Humsavar for CLASP2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000000562 -- 33,516,916(+) GCATT(A/T)GATTA intron-variant
rs1000019282 -- 33,651,612(+) CACTT(C/T)GGGAA intron-variant
rs1000031055 -- 33,616,094(+) AATCA(A/G)TAAAA intron-variant
rs1000037326 -- 33,602,340(+) AGATT(C/T)TTAGA intron-variant
rs1000073702 -- 33,710,240(+) ATCCT(A/T)AGGGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CLASP2 Gene

Variant ID Type Subtype PubMed ID
dgv2507n106 CNV deletion 24896259
esv2659678 CNV deletion 23128226
esv2725121 CNV deletion 23290073
esv2725122 CNV deletion 23290073
esv3302502 CNV tandem duplication 20981092
esv3426391 CNV duplication 20981092
esv3561718 CNV deletion 23714750
esv3595795 CNV loss 21293372
esv5412 CNV loss 18987735
esv6458 CNV loss 19470904
nsv1001132 CNV gain 25217958
nsv1006641 CNV gain 25217958
nsv1109504 CNV deletion 24896259
nsv1118698 CNV duplication 24896259
nsv1150509 CNV duplication 26484159
nsv1152886 CNV deletion 26484159
nsv236645 CNV deletion 16902084
nsv3754 CNV deletion 18451855
nsv3756 CNV insertion 18451855
nsv460487 CNV gain 19166990
nsv522881 CNV gain 19592680
nsv525628 CNV loss 19592680
nsv590051 CNV gain 21841781
nsv955541 CNV deletion 24416366
nsv999642 CNV gain 25217958

Variation tolerance for CLASP2 Gene

Gene Damage Index Score: 5.14; 69.35% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CLASP2 Gene

Human Gene Mutation Database (HGMD)
CLASP2
SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLASP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CLASP2 Gene

Disorders for CLASP2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CLASP2 Gene - From: HGMD and DISEASES

Disorder Aliases PubMed IDs
clostridium difficile colitis
  • pseudomembranous colitis
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CLASP2

Genetic Association Database (GAD)
CLASP2
Human Genome Epidemiology (HuGE) Navigator
CLASP2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CLASP2
genes like me logo Genes that share disorders with CLASP2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CLASP2 Gene

Publications for CLASP2 Gene

  1. Prediction of the coding sequences of unidentified human genes. X. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PMID: 9734811) Ishikawa K … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 1998) 2 3 4 60
  2. CLASP2 Has Two Distinct TOG Domains That Contribute Differently to Microtubule Dynamics. (PMID: 26003921) Maki T … Hayashi I (Journal of molecular biology 2015) 3 4 60
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 45 60
  4. ErbB2 receptor controls microtubule capture by recruiting ACF7 to the plasma membrane of migrating cells. (PMID: 20937854) Zaoui K … Badache A (Proceedings of the National Academy of Sciences of the United States of America 2010) 3 4 60
  5. Pathway-based approaches to imaging genetics association studies: Wnt signaling, GSK3beta substrates and major depression. (PMID: 20219685) Inkster B … Matthews PM (NeuroImage 2010) 3 45 60

Products for CLASP2 Gene

Sources for CLASP2 Gene

Content
Loading form....