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Aliases for CKMT2-AS1 Gene

Subcategory (RNA class) for CKMT2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CKMT2-AS1 Gene

  • CKMT2 Antisense RNA 1 2 3 5
  • CTC-281B15.1 3

External Ids for CKMT2-AS1 Gene

Previous GeneCards Identifiers for CKMT2-AS1 Gene

  • GC05M080501

Summaries for CKMT2-AS1 Gene

GeneCards Summary for CKMT2-AS1 Gene

CKMT2-AS1 (CKMT2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CKMT2-AS1 Gene

Genomics for CKMT2-AS1 Gene

Regulatory Elements for CKMT2-AS1 Gene

Enhancers for CKMT2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F081300 0.2 ENCODE 46.3 -1.1 -1110 4.7 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 FOS CKMT2-AS1 ENSG00000248794 ZCCHC9 GC05M081320
GH05F081231 0.7 Ensembl ENCODE 38.4 +67.6 67579 4.8 DRAP1 ESRRA SAP130 ZIC2 ZFHX2 ZNF316 GLIS2 POLR2A SCRT2 ZNF600 CKMT2-AS1 ENSG00000248794 ENSG00000249772 GC05M081226
GH05F081244 1 Ensembl ENCODE 34.3 +55.2 55167 4.3 RNF2 HLF MAFG NR3C1 JUND NFE2 FOS NFE2L2 TCF7L2 CKMT2-AS1 ENSG00000248794
GH05F081267 0.8 Ensembl ENCODE 33.4 +32.4 32351 2.5 MXI1 PKNOX1 MLX KLF17 MAX PATZ1 SCRT2 PRDM10 FOS TCF7L2 CKMT2-AS1 ZCCHC9 CKMT2 ENSG00000248794
GH05F081255 0.3 FANTOM5 22 +45.6 45600 0.3 ZNF266 CKMT2-AS1 CKMT2 ENSG00000248794
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CKMT2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CKMT2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001411155 -31 2801 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 SP3

Genomic Location for CKMT2-AS1 Gene

Chromosome:
5
Start:
81,204,084 bp from pter
End:
81,301,569 bp from pter
Size:
97,486 bases
Orientation:
Minus strand

Genomic View for CKMT2-AS1 Gene

Genes around CKMT2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CKMT2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CKMT2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CKMT2-AS1 Gene

Proteins for CKMT2-AS1 Gene

Post-translational modifications for CKMT2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CKMT2-AS1 Gene

Domains & Families for CKMT2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CKMT2-AS1 Gene

Function for CKMT2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CKMT2-AS1 Gene

Localization for CKMT2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CKMT2-AS1 Gene

Pathways & Interactions for CKMT2-AS1 Gene

SuperPathways for CKMT2-AS1 Gene

No Data Available

Interacting Proteins for CKMT2-AS1 Gene

Gene Ontology (GO) - Biological Process for CKMT2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CKMT2-AS1 Gene

Transcripts for CKMT2-AS1 Gene

mRNA/cDNA for CKMT2-AS1 Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CKMT2-AS1 Gene

No ASD Table

Relevant External Links for CKMT2-AS1 Gene

GeneLoc Exon Structure for
CKMT2-AS1
ECgene alternative splicing isoforms for
CKMT2-AS1

Expression for CKMT2-AS1 Gene

mRNA expression in normal human tissues for CKMT2-AS1 Gene

genes like me logo Genes that share expression patterns with CKMT2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CKMT2-AS1 Gene

Orthologs for CKMT2-AS1 Gene

Evolution for CKMT2-AS1 Gene

ENSEMBL:
Gene Tree for CKMT2-AS1 (if available)
TreeFam:
Gene Tree for CKMT2-AS1 (if available)

No data available for Orthologs for CKMT2-AS1 Gene

Paralogs for CKMT2-AS1 Gene

No data available for Paralogs for CKMT2-AS1 Gene

Variants for CKMT2-AS1 Gene

Sequence variations from dbSNP and Humsavar for CKMT2-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10036022 -- 81,301,451(+) TTGAA(C/T)TCTTC nc-transcript-variant, upstream-variant-2KB
rs10036376 -- 81,252,412(+) TAAGA(C/T)AGCAC intron-variant
rs10038684 -- 81,285,159(+) gagac(A/C)attag intron-variant
rs10041063 -- 81,249,522(+) TCTCT(A/G)GGCAG intron-variant
rs10052929 -- 81,302,186(+) GATAA(C/T)TTAGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CKMT2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1621e212 CNV loss 25503493
esv2763877 CNV loss 21179565
esv3605591 CNV loss 21293372
esv3890664 CNV gain 25118596
nsv1073469 CNV deletion 25765185
nsv598750 CNV gain 21841781
nsv819322 CNV loss 19587683
nsv964904 CNV duplication 23825009

Relevant External Links for CKMT2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CKMT2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CKMT2-AS1 Gene

Disorders for CKMT2-AS1 Gene

Relevant External Links for CKMT2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CKMT2-AS1

No disorders were found for CKMT2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CKMT2-AS1 Gene

Publications for CKMT2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for CKMT2-AS1 Gene

Sources for CKMT2-AS1 Gene

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