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Aliases for CKMT2-AS1 Gene

Subcategory (RNA class) for CKMT2-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for CKMT2-AS1 Gene

  • CKMT2 Antisense RNA 1 2 3
  • CTC-281B15.1 3

External Ids for CKMT2-AS1 Gene

Previous GeneCards Identifiers for CKMT2-AS1 Gene

  • GC05M080501

Summaries for CKMT2-AS1 Gene

GeneCards Summary for CKMT2-AS1 Gene

CKMT2-AS1 (CKMT2 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CKMT2-AS1 Gene

Genomics for CKMT2-AS1 Gene

Genomic Location for CKMT2-AS1 Gene

Start:
81,204,084 bp from pter
End:
81,301,569 bp from pter
Size:
97,486 bases
Orientation:
Minus strand

Genomic View for CKMT2-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CKMT2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CKMT2-AS1 Gene

No data available for Regulatory Elements for CKMT2-AS1 Gene

Proteins for CKMT2-AS1 Gene

Post-translational modifications for CKMT2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CKMT2-AS1 Gene

Domains for CKMT2-AS1 Gene

Gene Families for CKMT2-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CKMT2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CKMT2-AS1 Gene

Function for CKMT2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CKMT2-AS1 Gene

Localization for CKMT2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CKMT2-AS1 Gene

Pathways for CKMT2-AS1 Gene

SuperPathways for CKMT2-AS1 Gene

No Data Available

Interacting Proteins for CKMT2-AS1 Gene

Gene Ontology (GO) - Biological Process for CKMT2-AS1 Gene

None

No data available for Pathways by source for CKMT2-AS1 Gene

Transcripts for CKMT2-AS1 Gene

mRNA/cDNA for CKMT2-AS1 Gene

(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CKMT2-AS1 Gene

No ASD Table

Relevant External Links for CKMT2-AS1 Gene

GeneLoc Exon Structure for
CKMT2-AS1
ECgene alternative splicing isoforms for
CKMT2-AS1

Expression for CKMT2-AS1 Gene

mRNA expression in normal human tissues for CKMT2-AS1 Gene

genes like me logo Genes that share expressions with CKMT2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for CKMT2-AS1 Gene

Orthologs for CKMT2-AS1 Gene

Evolution for CKMT2-AS1 Gene

ENSEMBL:
Gene Tree for CKMT2-AS1 (if available)
TreeFam:
Gene Tree for CKMT2-AS1 (if available)

No data available for Orthologs for CKMT2-AS1 Gene

Paralogs for CKMT2-AS1 Gene

No data available for Paralogs for CKMT2-AS1 Gene

Variants for CKMT2-AS1 Gene

Sequence variations from dbSNP and Humsavar for CKMT2-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs2173697 -- 81,289,504(+) AAGGC(A/G)CAGAG intron-variant
rs2406555 -- 81,289,541(+) CCTAT(C/T)CATCT intron-variant
rs4259152 -- 81,291,754(+) aaaac(A/C)aaaac intron-variant
rs4703829 -- 81,278,863(+) tcagt(G/T)tgctg intron-variant
rs4703832 -- 81,295,736(+) AGATA(C/T)GTCTA intron-variant

Relevant External Links for CKMT2-AS1 Gene

HapMap Linkage Disequilibrium report
CKMT2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CKMT2-AS1 Gene

Disorders for CKMT2-AS1 Gene

No disorders were found for CKMT2-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for CKMT2-AS1 Gene

Publications for CKMT2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for CKMT2-AS1 Gene

Sources for CKMT2-AS1 Gene

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