Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CKLF-CMTM1 Gene

Aliases for CKLF-CMTM1 Gene

  • CKLF-CMTM1 Readthrough 2 3

External Ids for CKLF-CMTM1 Gene

Previous GeneCards Identifiers for CKLF-CMTM1 Gene

  • GC16U901323
  • GC16P066588
  • GC16P066589
  • GC16P066593
  • GC16P066597
  • GC16P066602

Summaries for CKLF-CMTM1 Gene

Entrez Gene Summary for CKLF-CMTM1 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring CKLF (chemokine-like factor) and CMTM1 (CKLF-like MARVEL transmembrane domain containing 1) genes on chromosome 16. The read-through transcript produces a fusion protein that shares sequence identity with each individual gene product. [provided by RefSeq, Feb 2011]

GeneCards Summary for CKLF-CMTM1 Gene

CKLF-CMTM1 (CKLF-CMTM1 Readthrough) is a Protein Coding gene. An important paralog of this gene is CMTM1.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CKLF-CMTM1 Gene

Genomics for CKLF-CMTM1 Gene

Genomic Location for CKLF-CMTM1 Gene

Start:
66,552,563 bp from pter
End:
66,579,135 bp from pter
Size:
26,573 bases
Orientation:
Plus strand

Genomic View for CKLF-CMTM1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CKLF-CMTM1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CKLF-CMTM1 Gene

No data available for Regulatory Elements for CKLF-CMTM1 Gene

Proteins for CKLF-CMTM1 Gene

  • Protein details for CKLF-CMTM1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087WVB3
    Recommended name:
    Protein CKLF-CMTM1
    Protein Accession:
    A0A087WVB3
    Secondary Accessions:

    Protein attributes for CKLF-CMTM1 Gene

    Size:
    168 amino acids
    Molecular mass:
    19099 Da
    Quaternary structure:
    No Data Available
  • Protein details for CKLF-CMTM1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087X286
    Recommended name:
    Protein CKLF-CMTM1
    Protein Accession:
    A0A087X286
    Secondary Accessions:

    Protein attributes for CKLF-CMTM1 Gene

    Size:
    92 amino acids
    Molecular mass:
    10176 Da
    Quaternary structure:
    No Data Available
  • Protein details for CKLF-CMTM1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    E9PIV8
    Recommended name:
    Protein CKLF-CMTM1
    Protein Accession:
    E9PIV8
    Secondary Accessions:

    Protein attributes for CKLF-CMTM1 Gene

    Size:
    60 amino acids
    Molecular mass:
    6641 Da
    Quaternary structure:
    No Data Available
  • Protein details for CKLF-CMTM1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    E9PLU7
    Recommended name:
    Chemokine-like factor
    Protein Accession:
    E9PLU7
    Secondary Accessions:

    Protein attributes for CKLF-CMTM1 Gene

    Size:
    33 amino acids
    Molecular mass:
    3940 Da
    Quaternary structure:
    No Data Available
  • Protein details for CKLF-CMTM1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    E9PSG2
    Recommended name:
    Protein CKLF-CMTM1
    Protein Accession:
    E9PSG2
    Secondary Accessions:

    Protein attributes for CKLF-CMTM1 Gene

    Size:
    115 amino acids
    Molecular mass:
    12852 Da
    Quaternary structure:
    No Data Available
  • Protein details for CKLF-CMTM1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H0YDF2
    Recommended name:
    Protein CKLF-CMTM1
    Protein Accession:
    H0YDF2
    Secondary Accessions:

    Protein attributes for CKLF-CMTM1 Gene

    Size:
    64 amino acids
    Molecular mass:
    6856 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CKLF-CMTM1 Gene

Proteomics data for CKLF-CMTM1 Gene at MOPED

Post-translational modifications for CKLF-CMTM1 Gene

No Post-translational modifications

Other Protein References for CKLF-CMTM1 Gene

No data available for DME Specific Peptides for CKLF-CMTM1 Gene

Domains for CKLF-CMTM1 Gene

Protein Domains for CKLF-CMTM1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CKLF-CMTM1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CKLF-CMTM1 Gene

Function for CKLF-CMTM1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CKLF-CMTM1 Gene

Localization for CKLF-CMTM1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CKLF-CMTM1 Gene

Pathways for CKLF-CMTM1 Gene

SuperPathways for CKLF-CMTM1 Gene

No Data Available

Interacting Proteins for CKLF-CMTM1 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000433998%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000433998 for CKLF-CMTM1 Gene via STRING

Symbol External ID(s) Details
UBC

Gene Ontology (GO) - Biological Process for CKLF-CMTM1 Gene

None

No data available for Pathways by source for CKLF-CMTM1 Gene

Transcripts for CKLF-CMTM1 Gene

mRNA/cDNA for CKLF-CMTM1 Gene

(3) REFSEQ mRNAs :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CKLF-CMTM1 Gene

No ASD Table

Relevant External Links for CKLF-CMTM1 Gene

GeneLoc Exon Structure for
CKLF-CMTM1
ECgene alternative splicing isoforms for
CKLF-CMTM1

Expression for CKLF-CMTM1 Gene

mRNA expression in normal human tissues for CKLF-CMTM1 Gene

genes like me logo Genes that share expressions with CKLF-CMTM1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for CKLF-CMTM1 Gene

Orthologs for CKLF-CMTM1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for CKLF-CMTM1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 34 (a)
OneToMany
dog
(Canis familiaris)
Mammalia CMTM1 36
  • 13 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Cmtm1 36
  • 10 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 17 (a)
OneToMany
Species with no ortholog for CKLF-CMTM1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CKLF-CMTM1 Gene

ENSEMBL:
Gene Tree for CKLF-CMTM1 (if available)
TreeFam:
Gene Tree for CKLF-CMTM1 (if available)

Paralogs for CKLF-CMTM1 Gene

Paralogs for CKLF-CMTM1 Gene

Selected SIMAP similar genes for CKLF-CMTM1 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with CKLF-CMTM1: view

Variants for CKLF-CMTM1 Gene

Structural Variations from Database of Genomic Variants (DGV) for CKLF-CMTM1 Gene

Variant ID Type Subtype PubMed ID
nsv906785 CNV Loss 21882294
nsv906786 CNV Loss 21882294
nsv906787 CNV Gain 21882294

Relevant External Links for CKLF-CMTM1 Gene

HapMap Linkage Disequilibrium report
CKLF-CMTM1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for CKLF-CMTM1 Gene

Disorders for CKLF-CMTM1 Gene

No disorders were found for CKLF-CMTM1 Gene.

No data available for UniProtKB/Swiss-Prot for CKLF-CMTM1 Gene

Publications for CKLF-CMTM1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  2. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3
  3. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PMID: 22505724) Udeshi N.D. … Carr S.A. (Mol. Cell Proteomics 2012) 3

Products for CKLF-CMTM1 Gene

Sources for CKLF-CMTM1 Gene

Back to Top

Content