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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CKAP4 Gene

protein-coding   GIFtS: 55
GCID: GC12M106631

cytoskeleton-associated protein 4

 Explore 11 diseases affiliated with
CKAP4 via our new
 Human Malady Compendium 
Biological research products
for CKAP4
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Cytoskeleton-Associated Protein 41 2     P631
CLIMP-631 2     63 KDa Membrane Protein2
ERGIC-631 2     Transmembrane Protein (63kD), Endoplasmic Reticulum/Golgi Intermediate
Compartment2
63-KDa Cytoskeleton-Linking Membrane Protein2 3     Type-II Transmembrane Protein P632
P631     Climp-633

External Ids:    HGNC: 169911   Entrez Gene: 109702   Ensembl: ENSG000001360267   UniProtKB: Q070653   

Export aliases for CKAP4 gene to outside databases

Previous GC identifers: GC12M105742 GC12M106512 GC12M105134 GC12M103692


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: CKAP4_HUMAN, Q07065
Function: High-affinity epithelial cell surface receptor for APF
Function: Mediates the anchoring of the endoplasmic reticulum to microtubules

Gene Wiki entry for CKAP4


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000012.11  NC_018923.1  NT_029419.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CKAP4 gene promoter:
         SRF   ER-alpha   AhR   AML1a   MAZR   SRF (504 AA)   LCR-F1   Arnt   HEN1   Pax-4a   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCKAP4 promoter sequence
   Search SABiosciences Chromatin IP Primers for CKAP4

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CKAP4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q23.3   Ensembl cytogenetic band:  12q23.3   HGNC cytogenetic band: 12q23.3

CKAP4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CKAP4 gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M106631:  view genomic region     (about GC identifiers)

Start:
106,631,655 bp from pter      End:
106,698,057 bp from pter
Size:
66,403 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: CKAP4_HUMAN, Q07065 (See protein sequence)
Recommended Name: Cytoskeleton-associated protein 4  
Size: 602 amino acids; 66022 Da
Subcellular location: Endoplasmic reticulum membrane; Single-pass type II membrane protein. Cell membrane; Single-pass
type II membrane protein. Cytoplasm, cytoskeleton. Cytoplasm, perinuclear region. Note=Translocates to the perinuclear
region upon APF-stimulation
Sequence caution: Sequence=AAH94824.1; Type=Miscellaneous discrepancy; Note=Aberrant splicing;
Secondary accessions: Q504S5 Q53ES6

Explore the universe of human proteins at neXtProt for CKAP4: NX_Q07065

Post-translational modifications:

  • Reversibly palmitoylated. Palmitoylation at Cys-100 by DHHC2 is required for its trafficking from the ER to the plasma
  • membrane and for its perinuclear localization1
  • Increased phosphorylation during mitosis prevents binding to microtubules1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q07065

  • CKAP4 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_006816.2  
    ENSEMBL proteins: 
     ENSP00000367265   ENSP00000449240  

    Human Recombinant Protein Products: 
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    Uscn Proteins for CKAP4

    Gene Ontology (GO): 5/9 cellular component terms (GO ID links to tree view) (see all 9):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005624membrane fraction ----
    GO:0005783endoplasmic reticulum ----
    GO:0005789endoplasmic reticulum membrane IEA--
    GO:0005811lipid particle IDA14741744
    GO:0005856cytoskeleton IEA--


    CKAP4 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ProtoNet protein and cluster: Q07065


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: CKAP4_HUMAN, Q07065
    Function: High-affinity epithelial cell surface receptor for APF
    Function: Mediates the anchoring of the endoplasmic reticulum to microtubules

    miRNA
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    hsa-miR-579 hsa-miR-495 hsa-miR-3607-3p hsa-miR-448 hsa-miR-429 hsa-miR-513a-5p hsa-miR-128 hsa-miR-3653
    SwitchGear 3'UTR luciferase reporter plasmidCKAP4 3' UTR sequence
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CKAP4

    1 GenomeRNAi human phenotype for CKAP4:
     Increased gamma-H2AX phosphory 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Protein processing in endoplasmic reticulum
    Protein processing in endoplasmic reticulum1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways



    1         Kegg Pathway  (Kegg details for CKAP4):
        Protein processing in endoplasmic reticulum


    CKAP4 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CKAP4

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/43 Interacting proteins for CKAP4 (Q070652, 3 ENSP000003672654) via UniProtKB, MINT, STRING, and/or I2D (see all 43)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ASCC2Q9H1I82, 3MINT-65466 I2D: score=5 
    PLATP007503, ENSP000002208094I2D: score=2 STRING: ENSP00000220809
    MYCP011063, ENSP000003672074I2D: score=1 STRING: ENSP00000367207
    EGFRP005333, ENSP000002754934I2D: score=1 STRING: ENSP00000275493
    ULK2Q8IYT83, ENSP000003548774I2D: score=1 STRING: ENSP00000354877
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CKAP4
    Search CenterWatch for drugs/clinical trials and news about CKAP4 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for CKAP4 gene: 
    NM_006825.3  

    Unigene Cluster for CKAP4:

    Cytoskeleton-associated protein 4
    Hs.74368  [show with all ESTs]
    Unigene Representative Sequence: NM_006825
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000378026(uc001tlk.3) ENST00000552828 ENST00000553039

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    8/32 QIAGEN miScript miRNA Assays for microRNAs that regulate CKAP4 (see all 32):
    hsa-miR-579 hsa-miR-495 hsa-miR-3607-3p hsa-miR-448 hsa-miR-429 hsa-miR-513a-5p hsa-miR-128 hsa-miR-3653
    SwitchGear 3'UTR luciferase reporter plasmidCKAP4 3' UTR sequence
    Inhib. RNA
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    Additional cDNA sequence: 

    AK123693.1 AK223563.1 BC015436.2 BC025341.1 BC037578.1 BC067357.1 BC082972.1 BC094824.1 
    S74539.1 X69910.2 

    21 DOTS entries:

    DT.75163974  DT.100798547  DT.87004334  DT.87017480  DT.100798544  DT.121177108  DT.91966429  DT.121177047 
    DT.102834158  DT.121177074  DT.100033267  DT.100798551  DT.121177089  DT.92390396  DT.100798549  DT.97859668 
    DT.87017481  DT.92462151  DT.95155996  DT.95156014  DT.121177048 

    24/532 AceView cDNA sequences (see all 532):

    AI131495 CB215299 CA420773 CO248192 AI350353 CA487252 BU679777 BQ683948 
    BQ677768 BQ182627 BU174197 BM679707 AU117654 AA293014 AI989518 BX105004 
    CA438041 AI285040 BC025341 BC015436 BM766340 AI340254 BQ897558 BQ679725 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CKAP4 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: AAGAGGTTTG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    CKAP4 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    2 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    Skeletal MuscleHyoid Arch MusclesMyoblastsSkeletal Muscle
    Skeletal MuscleMandibular Arch MusclesMyoblastsSkeletal Muscle
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See CKAP4 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CKAP4

    SOURCE GeneReport for Unigene cluster: Hs.74368
        SABiosciences Custom PCR Arrays for CKAP4
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CKAP4

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for CKAP4 gene from 6/13 species (see all 13)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ckap41 , 5 cytoskeleton-associated protein 41, 5 85.19(n)1
    83.97(a)1
      10 (41.52 cM)5
    2161971  NM_175451.11  NP_780660.11 
     845263055 
    chicken
    (Gallus gallus)
    Aves CKAP41 cytoskeleton-associated protein 4 62(n)
    57.75(a)
      418073  XM_416309.3  XP_416309.3 
    lizard
    (Anolis carolinensis)
    Reptilia CKAP46
    --
    52(a)
    1 ↔ 1
    5(19119275-19125375)
    African clawed frog
    (Xenopus laevis)
    Amphibia BG554644.12   -- 81.25(n)    BG554644.1 
    zebrafish
    (Danio rerio)
    Actinopterygii zgc:859751 zgc:85975 46.7(n)
    25.89(a)
      406549  NM_213265.1  NP_998430.1 
    wheat
    (Triticum aestivum)
    Liliopsida BQ484045.12   -- 70.93(n)    BQ484045.1 


    ENSEMBL Gene Tree for CKAP4 (if available)
    TreeFam Gene Tree for CKAP4 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for CKAP4 gene

    CKAP4 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for CKAP4
    PGOHUM00000233631


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/249 NCBI SNPs in CKAP4 are shown (see all 249    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 12 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1400631771,2
    --106631227(+) CAGAAA/CCCGGG 1 -- ds50010--------
    rs1440932461,2
    C,--106631285(+) GGTGA-/CA    
       GAGCG
    CAGAG
    1 -- ds50010--------
    rs1809251191,2
    --106631292(+) AGAGCA/GAGACT 1 -- ds50010--------
    rs2012404121,2
    C--106631325(-) GCACTG/TTTTTT 1 -- ds50010--------
    rs111129081,2
    C,A,--106631397(+) GCTCCT/AAGGAA 1 -- ds50014Minor allele frequency- A:0.26WA NA EA 360
    rs1438050501,2
    --106631423(+) TGAGGA/GTTGAG 1 -- ds50010--------
    rs1171105861,2
    F,--106631434(+) ATCCTG/CTGCTT 1 -- ds50011Minor allele frequency- C:0.02NA 120
    rs760478481,2
    --106631501(+) AAAGGA/TGGTCC 1 -- ds50010--------
    rs1406454851,2
    --106631530(+) CATCTC/TGGTTT 1 -- ds50010--------
    rs1440517641,2
    C,--106631761(+) TTTTT-/ACTTTT 1 -- ut310--------

    HapMap Linkage Disequilibrium report for CKAP4 (106631655 - 106698057 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 1 variation for CKAP4
         1 CNV: 66320

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    CKAP4 for disorders           About GeneDecksing

    11 diseases for CKAP4:    About MalaCards
    interstitial cystitis    amelogenesis imperfecta    cystitis    n syndrome
    ectrodactyly    squamous cell carcinoma    bladder carcinoma    breast carcinoma
    carcinoma    melanoma    neuronitis

    3 diseases from the University of Copenhagen DISEASES database for CKAP4:
    Interstitial cystitis     Chronic interstitial cystitis     steroid-induced glaucoma

    Export disorders for CKAP4 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CKAP4 gene, integrated from 9 sources (see all 67):
    (articles sorted by number of sources associating them with CKAP4)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A reversibly palmitoylated resident protein(p63) of an ER-Golgi intermediate compartment is related to a circulatory shock resuscitation protein. (PubMed id 8314870)1, 2, 3 Schweizer A....Hauri H.-P. (1993)
    2. Palmitoylation of cytoskeleton associated protein 4 by DHHC2 regulates antiproliferative factor-mediated signaling. (PubMed id 19144824)1, 2, 9 Planey S.L....Zacharias D.A. (2009)
    3. Phosphorylation controls CLIMP-63-mediated anchoring of the endoplasmic reticulum to microtubules. (PubMed id 15703217)1, 2, 9 Vedrenne C....Hauri H.P. (2005)
    4. CKAP4/p63 is a receptor for the frizzled-8 protein-related antiproliferative factor from interstitial cystitis patients. (PubMed id 17030514)1, 2 Conrads T.P....Keay S.K. (2006)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    6. Subdomain-specific localization of CLIMP-63 (p63) in the endoplasmic reticulum is mediated by its luminal alpha-helical segment. (PubMed id 11402071)1, 9 Klopfenstein D.R....Hauri H.P. (2001)
    7. Functional regulation of tissue plasminogen activator on the surface of vascular smooth muscle cells by the type-II transmembrane protein p63 (CKAP4). (PubMed id 12913003)1, 9 Razzaq T.M....Ellis V. (2003)
    8. Climp-63-mediated binding of microtubules to the ER affects the lateral mobility of translocon complexes. (PubMed id 17567679)2, 9 Nikonov A.V....Kreibich G. (2007)
    9. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118)1 Woods N.T....Monteiro A.N. (2012)
    10. Surfactant protein A blocks recognition of Pseudomonas aeruginosa by CKAP4/P63 on airway epithelial cells. (PubMed id 22966120)1 Barbier M....Alberti S. (2012)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
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    NCBI Bookshelf
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 10970 HGNC: 16991 AceView: CKAP4 Ensembl:ENSG00000136026 euGenes: HUgn10970
    ECgene: CKAP4 Kegg: 10970 H-InvDB: CKAP4

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CKAP4 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for CKAP4 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for CKAP4 gene:
    Search GeneIP for patents involving CKAP4

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
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