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Aliases for CITED2 Gene

Aliases for CITED2 Gene

  • Cbp/P300 Interacting Transactivator With Glu/Asp Rich Carboxy-Terminal Domain 2 2 3 5
  • MSG-Related Protein 1 3 4
  • P35SRJ 3 4
  • MRG-1 3 4
  • MRG1 3 4
  • Cbp/P300-Interacting Transactivator, With Glu/Asp Rich Carboxy-Terminal Domain, 2 2
  • Melanocyte-Specific Gene 1-Related Gene 1 3
  • Cbp/P300-Interacting Transactivator 2 3
  • MSG1-Related Gene 1 3
  • ASD8 3
  • VSD2 3

External Ids for CITED2 Gene

Previous GeneCards Identifiers for CITED2 Gene

  • GC06M139540
  • GC06M139673
  • GC06M139735
  • GC06M137254

Summaries for CITED2 Gene

Entrez Gene Summary for CITED2 Gene

  • The protein encoded by this gene inhibits transactivation of HIF1A-induced genes by competing with binding of hypoxia-inducible factor 1-alpha to p300-CH1. Mutations in this gene are a cause of cardiac septal defects. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, May 2012]

GeneCards Summary for CITED2 Gene

CITED2 (Cbp/P300 Interacting Transactivator With Glu/Asp Rich Carboxy-Terminal Domain 2) is a Protein Coding gene. Diseases associated with CITED2 include Atrial Septal Defect 8 and Ventricular Septal Defect 2. Among its related pathways are Cellular Senescence (REACTOME) and Transcriptional regulation by the AP-2 (TFAP2) family of transcription factors. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding and transcription coactivator activity. An important paralog of this gene is CITED1.

UniProtKB/Swiss-Prot for CITED2 Gene

  • Transcriptional coactivator of the p300/CBP-mediated transcription complex. Acts as a bridge, linking TFAP2 transcription factors and the p300/CBP transcriptional coactivator complex in order to stimulate TFAP2-mediated transcriptional activation. Positively regulates TGF-beta signaling through its association with the SMAD/p300/CBP-mediated transcriptional coactivator complex. Stimulates the peroxisome proliferator-activated receptors PPARA transcriptional activity. Enhances estrogen-dependent transactivation mediated by estrogen receptors. Acts also as a transcriptional corepressor; interferes with the binding of the transcription factors HIF1A or STAT2 and the p300/CBP transcriptional coactivator complex. Participates in sex determination and early gonad development by stimulating transcription activation of SRY. Plays a role in controlling left-right patterning during embryogenesis; potentiates transcriptional activation of NODAL-mediated gene transcription in the left lateral plate mesoderm (LPM). Plays an essential role in differentiation of the adrenal cortex from the adrenogonadal primordium (AGP); stimulates WT1-mediated transcription activation thereby up-regulating the nuclear hormone receptor NR5A1 promoter activity. Associates with chromatin to the PITX2 P1 promoter region.

Gene Wiki entry for CITED2 Gene

Additional gene information for CITED2 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CITED2 Gene

Genomics for CITED2 Gene

Regulatory Elements for CITED2 Gene

Enhancers for CITED2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H139289 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.1 +83.0 82958 4 HDGF PKNOX1 ZNF133 FEZF1 ZNF2 FOS ATF7 ZNF548 RUNX3 YY2 TXLNB ENSG00000225148 LOC102723690 CITED2 HECA REPS1 ABRACL ENSG00000272446
GH06H139576 1.5 FANTOM5 Ensembl ENCODE dbSUPER 12.7 -203.4 -203413 2 ZNF140 ZNF266 RAD21 ZEB1 ZNF697 FOS ZNF680 ZNF362 ZBTB8A ZNF518A CITED2 LOC105378024 ATP5F1P6
GH06H139585 1.5 Ensembl ENCODE dbSUPER 11.8 -213.9 -213852 5 FOXA2 FEZF1 ZNF2 TCF12 GATA2 FOS ATF7 TSHZ1 ZNF518A NFIL3 CITED2 ATP5F1P6 LOC105378024
GH06H138403 1.1 ENCODE 10.4 +969.8 969784 3 PKNOX1 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 HEBP2 CITED2 MARCKSL1P2 PIR51373
GH06H138582 0.8 ENCODE 11.7 +791.9 791852 0 ESRRA NFIB NFXL1 BMI1 ZBTB7B E2F1 CTBP1 GATA3 FOS RCOR1 CITED2 PERP LOC100129577 ENSG00000274594
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CITED2 on UCSC Golden Path with GeneCards custom track

Promoters for CITED2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000203869 850 5201 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC PPARGC1A

Transcription factor binding sites by QIAGEN in the CITED2 gene promoter:

Genomic Location for CITED2 Gene

Chromosome:
6
Start:
139,371,807 bp from pter
End:
139,374,650 bp from pter
Size:
2,844 bases
Orientation:
Minus strand

Genomic View for CITED2 Gene

Genes around CITED2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CITED2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CITED2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CITED2 Gene

Proteins for CITED2 Gene

  • Protein details for CITED2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q99967-CITE2_HUMAN
    Recommended name:
    Cbp/p300-interacting transactivator 2
    Protein Accession:
    Q99967
    Secondary Accessions:
    • O95426
    • Q5VTF4

    Protein attributes for CITED2 Gene

    Size:
    270 amino acids
    Molecular mass:
    28497 Da
    Quaternary structure:
    • Interacts (via C-terminus) with SMAD2. Interacts (via C-terminus) with SMAD3 (via MH2 domain). Interacts with LHX2 (via LIM domains). Interacts with WT1 (By similarity). Interacts (via C-terminus) with EP300 (via CH1 domain); the interaction is stimulated in response to hypoxia. Interacts with PPARA. Interacts (via C-terminus) with TFAP2A, TFAP2B and TFAP2C.

    Three dimensional structures from OCA and Proteopedia for CITED2 Gene

    Alternative splice isoforms for CITED2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CITED2 Gene

Post-translational modifications for CITED2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CITED2 Gene

Antibody Products

  • Abcam antibodies for CITED2

No data available for DME Specific Peptides for CITED2 Gene

Domains & Families for CITED2 Gene

Gene Families for CITED2 Gene

Human Protein Atlas (HPA):
  • Disease related genes
  • Plasma proteins
  • Predicted intracellular proteins

Protein Domains for CITED2 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for CITED2 Gene

Graphical View of Domain Structure for InterPro Entry

Q99967

UniProtKB/Swiss-Prot:

CITE2_HUMAN :
  • Belongs to the CITED family.
Family:
  • Belongs to the CITED family.
genes like me logo Genes that share domains with CITED2: view

Function for CITED2 Gene

Molecular function for CITED2 Gene

GENATLAS Biochemistry:
CBP/p300 interactive transactivator with ED rich tail 2,with two isoforms p35srj,ubiquitously expressed,involved in the recruitement of p300/CBP by hypoxia-inducible factor HIF1A and mrg1 (MSG1-related gene),cytokine-inducible transcription factor with transformation activity
UniProtKB/Swiss-Prot Function:
Transcriptional coactivator of the p300/CBP-mediated transcription complex. Acts as a bridge, linking TFAP2 transcription factors and the p300/CBP transcriptional coactivator complex in order to stimulate TFAP2-mediated transcriptional activation. Positively regulates TGF-beta signaling through its association with the SMAD/p300/CBP-mediated transcriptional coactivator complex. Stimulates the peroxisome proliferator-activated receptors PPARA transcriptional activity. Enhances estrogen-dependent transactivation mediated by estrogen receptors. Acts also as a transcriptional corepressor; interferes with the binding of the transcription factors HIF1A or STAT2 and the p300/CBP transcriptional coactivator complex. Participates in sex determination and early gonad development by stimulating transcription activation of SRY. Plays a role in controlling left-right patterning during embryogenesis; potentiates transcriptional activation of NODAL-mediated gene transcription in the left lateral plate mesoderm (LPM). Plays an essential role in differentiation of the adrenal cortex from the adrenogonadal primordium (AGP); stimulates WT1-mediated transcription activation thereby up-regulating the nuclear hormone receptor NR5A1 promoter activity. Associates with chromatin to the PITX2 P1 promoter region.
UniProtKB/Swiss-Prot Induction:
By hypoxia and deferoxamine.

Phenotypes From GWAS Catalog for CITED2 Gene

Gene Ontology (GO) - Molecular Function for CITED2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001102 RNA polymerase II activating transcription factor binding IEA --
GO:0001105 RNA polymerase II transcription coactivator activity IBA --
GO:0001106 RNA polymerase II transcription corepressor activity IDA 22735262
GO:0003682 chromatin binding ISS --
GO:0003700 transcription factor activity, sequence-specific DNA binding ISS --
genes like me logo Genes that share ontologies with CITED2: view
genes like me logo Genes that share phenotypes with CITED2: view

Human Phenotype Ontology for CITED2 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for CITED2 Gene

MGI Knock Outs for CITED2:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CITED2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for CITED2 Gene

Localization for CITED2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CITED2 Gene

Nucleus. Note=Colocalizes with EP300 in dot-like structures.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CITED2 gene
Compartment Confidence
nucleus 5
cytosol 2
extracellular 1

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for CITED2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000790 nuclear chromatin ISS --
GO:0005634 nucleus IDA,IEA 9434189
GO:0005654 nucleoplasm TAS --
GO:0043234 protein complex IMP 14594809
genes like me logo Genes that share ontologies with CITED2: view

Pathways & Interactions for CITED2 Gene

genes like me logo Genes that share pathways with CITED2: view

Pathways by source for CITED2 Gene

SIGNOR curated interactions for CITED2 Gene

Is activated by:

Gene Ontology (GO) - Biological Process for CITED2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IMP 17906695
GO:0001568 blood vessel development IEA --
GO:0001570 vasculogenesis IEA --
GO:0001666 response to hypoxia IMP 17906695
GO:0001701 in utero embryonic development IEA --
genes like me logo Genes that share ontologies with CITED2: view

Drugs & Compounds for CITED2 Gene

No Compound Related Data Available

Transcripts for CITED2 Gene

Unigene Clusters for CITED2 Gene

Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CITED2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CITED2 Gene

No ASD Table

Relevant External Links for CITED2 Gene

GeneLoc Exon Structure for
CITED2
ECgene alternative splicing isoforms for
CITED2

Expression for CITED2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CITED2 Gene

Protein differential expression in normal tissues from HIPED for CITED2 Gene

This gene is overexpressed in Fetal heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for CITED2 Gene



Protein tissue co-expression partners for CITED2 Gene

NURSA nuclear receptor signaling pathways regulating expression of CITED2 Gene:

CITED2

SOURCE GeneReport for Unigene cluster for CITED2 Gene:

Hs.82071

Evidence on tissue expression from TISSUES for CITED2 Gene

  • Pancreas(4.3)
  • Heart(3.1)
  • Kidney(2.8)
  • Liver(2.8)
  • Muscle(2.8)
  • Nervous system(2.7)
  • Adrenal gland(2.6)
  • Intestine(2.5)
  • Lung(2.5)
  • Skin(2.1)
  • Bone marrow(2)
  • Thyroid gland(2)

Phenotype-based relationships between genes and organs from Gene ORGANizer for CITED2 Gene

Germ Layers:
  • ectoderm
  • mesoderm
Systems:
  • cardiovascular
  • integumentary
  • nervous
  • reproductive
  • skeletal muscle
  • skeleton
Organs:
Head and neck:
  • ear
  • eye
  • eyelid
  • face
  • forehead
  • head
  • lip
  • nose
  • outer ear
  • skull
Thorax:
  • heart
  • heart valve
Pelvis:
  • testicle
Limb:
  • digit
  • finger
  • foot
  • hand
  • lower limb
  • toe
  • upper limb
General:
  • skin
genes like me logo Genes that share expression patterns with CITED2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CITED2 Gene

Orthologs for CITED2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CITED2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CITED2 33 34
  • 94.91 (n)
oppossum
(Monodelphis domestica)
Mammalia CITED2 34
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CITED2 33 34
  • 91.98 (n)
mouse
(Mus musculus)
Mammalia Cited2 33 16 34
  • 91.82 (n)
rat
(Rattus norvegicus)
Mammalia Cited2 33
  • 91.45 (n)
cow
(Bos Taurus)
Mammalia CITED2 33 34
  • 90.74 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia CITED2 34
  • 81 (a)
OneToOne
chicken
(Gallus gallus)
Aves CITED2 33 34
  • 80.28 (n)
lizard
(Anolis carolinensis)
Reptilia CITED2 34
  • 83 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cited2 33
  • 74.67 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.25598 33
zebrafish
(Danio rerio)
Actinopterygii cited2 33 34
  • 69.71 (n)
idibd5008 33
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10810 33
Species where no ortholog for CITED2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CITED2 Gene

ENSEMBL:
Gene Tree for CITED2 (if available)
TreeFam:
Gene Tree for CITED2 (if available)

Paralogs for CITED2 Gene

Paralogs for CITED2 Gene

genes like me logo Genes that share paralogs with CITED2: view

Variants for CITED2 Gene

Sequence variations from dbSNP and Humsavar for CITED2 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000375923 -- 139,376,004(+) TTCTC(A/C)CATGG upstream-variant-2KB
rs1000475052 -- 139,374,833(+) CGCCC(A/C/G)GTCGC upstream-variant-2KB
rs1001122499 -- 139,374,817(+) TGCGG(A/G)GCCCG upstream-variant-2KB
rs1001751673 -- 139,373,461(+) GCCGC(C/T)GCTGT reference, missense
rs1002085174 -- 139,374,275(+) CATTA(A/C)ATCAG intron-variant, upstream-variant-2KB, utr-variant-5-prime

Variation tolerance for CITED2 Gene

Residual Variation Intolerance Score: 20.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.64; 31.47% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CITED2 Gene

Human Gene Mutation Database (HGMD)
CITED2
SNPedia medical, phenotypic, and genealogical associations of SNPs for
CITED2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CITED2 Gene

Disorders for CITED2 Gene

MalaCards: The human disease database

(13) MalaCards diseases for CITED2 Gene - From: HGMD, OMIM, ClinVar, GeneTests, Orphanet, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
atrial septal defect 8
  • atrial heart septal defect 8
ventricular septal defect 2
  • vsd2
atrial septal defect sinus venosus
  • sinus venosus asd
patent foramen ovale
  • atrial septal defect within oval fossa
hypoxia
- elite association - COSMIC cancer census association via MalaCards

UniProtKB/Swiss-Prot

CITE2_HUMAN
  • Atrial septal defect 8 (ASD8) [MIM:614433]: A congenital heart malformation characterized by incomplete closure of the wall between the atria resulting in blood flow from the left to the right atria. {ECO:0000269 PubMed:16287139}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Ventricular septal defect 2 (VSD2) [MIM:614431]: A common form of congenital cardiovascular anomaly that may occur alone or in combination with other cardiac malformations. It can affect any portion of the ventricular septum, resulting in abnormal communications between the two lower chambers of the heart. Classification is based on location of the communication, such as perimembranous, inlet, outlet (infundibular), central muscular, marginal muscular, or apical muscular defect. Large defects that go unrepaired may give rise to cardiac enlargement, congestive heart failure, pulmonary hypertension, Eisenmengers syndrome, delayed fetal brain development, arrhythmias, and even sudden cardiac death. {ECO:0000269 PubMed:16287139}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for CITED2

Genetic Association Database (GAD)
CITED2
Human Genome Epidemiology (HuGE) Navigator
CITED2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CITED2
genes like me logo Genes that share disorders with CITED2: view

No data available for Genatlas for CITED2 Gene

Publications for CITED2 Gene

  1. Molecular cloning and chromosomal localization of the human CITED2 gene encoding p35srj/Mrg1. (PMID: 10552932) Leung MK … Bhattacharya S (Genomics 1999) 2 3 4 22 60
  2. Identification and functional analysis of CITED2 mutations in patients with congenital heart defects. (PMID: 16287139) Sperling S … Hammer S (Human mutation 2005) 3 4 45 60
  3. Interaction of the TAZ1 domain of the CREB-binding protein with the activation domain of CITED2: regulation by competition between intrinsically unstructured ligands for non-identical binding sites. (PMID: 14594809) De Guzman RN … Wright PE (The Journal of biological chemistry 2004) 3 4 22 60
  4. Functional role of p35srj, a novel p300/CBP binding protein, during transactivation by HIF-1. (PMID: 9887100) Bhattacharya S … Livingston DM (Genes & development 1999) 3 4 22 60
  5. msg1, a novel melanocyte-specific gene, encodes a nuclear protein and is associated with pigmentation. (PMID: 8901575) Shioda T … Isselbacher KJ (Proceedings of the National Academy of Sciences of the United States of America 1996) 2 3 4 60

Products for CITED2 Gene

Sources for CITED2 Gene

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