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Aliases for CISTR Gene

Subcategory (RNA class) for CISTR Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CISTR Gene

  • Chondrogenesis-Associated Transcript 2 3 5
  • Cis- And Trans-Chromosomal Chondrogenic Regulator Transcript 2 3
  • Chondrogenic Regulator LncRNA 3
  • CISTR-ACT 3
  • CISTRACT 3
  • Re52431 3

External Ids for CISTR Gene

Previous GeneCards Identifiers for CISTR Gene

  • GC12M054146

Summaries for CISTR Gene

GeneCards Summary for CISTR Gene

CISTR (Chondrogenesis-Associated Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CISTR Gene

Genomics for CISTR Gene

Regulatory Elements for CISTR Gene

Enhancers for CISTR Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G053768 0.8 ENCODE 4.9 -13.4 -13423 3.3 JUN ZMYM3 RBBP5 ZIC2 ZNF664 ZNF121 GLIS2 POLR2A GATA2 ZNF600 HOXC-AS3 HOXC10 MIR196A2 HOXC6 HOXC5 HOXC9 HOXC-AS1 HOXC-AS2 HOXC8 HOTAIR
GH12G053756 1.1 Ensembl ENCODE 0.7 -0.1 -115 1.3 ELF3 HDGF PKNOX1 ZSCAN4 BMI1 RAD21 ZBTB40 KAT2B ZNF121 ZNF366 SP1 ENSG00000258344 CALCOCO1 AAAS MIR196A2 LOC100652999 ATP5G2 ZNF740 CISTR GC12M053768
GH12G053755 0.9 FANTOM5 ENCODE 0.7 +1.1 1090 0.5 SCRT1 CTCF PKNOX1 SCRT2 PRDM10 ZIC2 ETS1 PCBP2 ATP5G2 HOXC11 HOXC13 LOC105378250 CISTR
GH12G053757 0.7 ENCODE 0.7 +1.7 1743 0.2 ZSCAN4 WRNIP1 MAX CBX2 ZNF2 ZIC2 ZNF121 BCL11A ZNF366 ZNF692 LOC105378250 CISTR
GH12G053767 1 ENCODE 0.4 -10.8 -10828 0.1 HDGF ATF1 PKNOX1 ARNT ZNF133 GLI4 ZNF2 GLIS2 KLF7 DEK ZNF740 ENSG00000258344 LOC100652999 AAAS TARBP2 SP1 MAP3K12 ENSG00000270175 IGFBP6 CBX5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CISTR on UCSC Golden Path with GeneCards custom track

Genomic Location for CISTR Gene

Chromosome:
12
Start:
53,750,447 bp from pter
End:
53,757,034 bp from pter
Size:
6,588 bases
Orientation:
Minus strand

Genomic View for CISTR Gene

Genes around CISTR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CISTR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CISTR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CISTR Gene

Proteins for CISTR Gene

Post-translational modifications for CISTR Gene

No Post-translational modifications

No data available for DME Specific Peptides for CISTR Gene

Domains & Families for CISTR Gene

Gene Families for CISTR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CISTR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CISTR Gene

Function for CISTR Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CISTR Gene

Localization for CISTR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CISTR Gene

Pathways & Interactions for CISTR Gene

SuperPathways for CISTR Gene

No Data Available

Interacting Proteins for CISTR Gene

Gene Ontology (GO) - Biological Process for CISTR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CISTR Gene

Drugs & Compounds for CISTR Gene

No Compound Related Data Available

Transcripts for CISTR Gene

mRNA/cDNA for CISTR Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CISTR Gene

No ASD Table

Relevant External Links for CISTR Gene

GeneLoc Exon Structure for
CISTR
ECgene alternative splicing isoforms for
CISTR

Expression for CISTR Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CISTR Gene

mRNA differential expression in normal tissues according to GTEx for CISTR Gene

This gene is overexpressed in Heart - Left Ventricle (x9.7) and Heart - Atrial Appendage (x9.1).

NURSA nuclear receptor signaling pathways regulating expression of CISTR Gene:

CISTR
genes like me logo Genes that share expression patterns with CISTR: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CISTR Gene

Orthologs for CISTR Gene

Evolution for CISTR Gene

ENSEMBL:
Gene Tree for CISTR (if available)
TreeFam:
Gene Tree for CISTR (if available)

No data available for Orthologs for CISTR Gene

Paralogs for CISTR Gene

No data available for Paralogs for CISTR Gene

Variants for CISTR Gene

Sequence variations from dbSNP and Humsavar for CISTR Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000372071 -- 53,753,216(+) AGCGA(A/G)TCGCA intron-variant, upstream-variant-2KB
rs1000574879 -- 53,753,747(+) GAGAC(C/G)GAGGC intron-variant, upstream-variant-2KB
rs1000983381 -- 53,751,563(+) CCCTC(A/C)GCCTC intron-variant
rs1001092208 -- 53,758,470(+) GCATA(C/T)CAGCT intron-variant, upstream-variant-2KB
rs1001294295 -- 53,758,690(+) CCTCC(A/G)TCACC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CISTR Gene

Variant ID Type Subtype PubMed ID
esv3302703 CNV tandem duplication 20981092
nsv1116700 CNV tandem duplication 24896259
nsv1125184 CNV insertion 24896259

Relevant External Links for CISTR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CISTR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CISTR Gene

Disorders for CISTR Gene

Relevant External Links for CISTR

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CISTR

No disorders were found for CISTR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CISTR Gene

Publications for CISTR Gene

  1. A misplaced lncRNA causes brachydactyly in humans. (PMID: 23093776) Maass P.G. … BAohring S. (J. Clin. Invest. 2012) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for CISTR Gene

Sources for CISTR Gene

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