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Aliases & Descriptions for CISH
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Descriptions Protein G18 3 Suppressor of cytokine signaling 2 , 3 cytokine inducible SH2-containing protein 2 cytokine-inducible SH2-containing protein 2 cytokine-inducible inhibitor of signaling type 1B 2
Search outside databases for aliases for CISH genePrevious GC identifers: GC03P049337 GC03P049507 GC03M050498 GC03M050602
Summaries for CISH (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for CISH : The protein encoded by this gene contains a SH2 domain and a SOCS box domain. The protein thusbelongs to the cytokine-induced STAT inhibitor (CIS), also known as suppressor of cytokinesignaling (SOCS) or STAT-induced STAT inhibitor (SSI), protein family. CIS family members areknown to be cytokine-inducible negative regulators of cytokine signaling. The expression of thisgene can be induced by IL2, IL3, GM-CSF and EPO in hematopoietic cells. Proteasome-mediateddegradation of this protein has been shown to be involved in the inactivation of theerythropoietin receptor. Multiple transcript variants encoding different isoforms have been foundfor this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: CISH_HUMAN, Q9NSE2 Function : SOCS family proteins form part of a classical negative feedback system that regulatescytokine signal transduction. CIS is involved in the negative regulation of cytokines that signalthrough the JAK-STAT5 pathway such as erythropoietin, prolactin and interleukin 3 (IL3) receptor.Inhibits STAT5 trans-activation by suppressing its tyrosine phosphorylation. May be asubstrate-recognition component of a SCF-like ECS (Elongin BC-CUL2/5-SOCS-box protein) E3ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomaldegradation of target proteins (By similarity)
Gene Wiki entry for CISH
Genomic Location for CISH
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the CISH gene Entrez Gene cytogenetic band: 3p21.3 Ensembl cytogenetic band: 3p21.31 HGNC cytogenetic band: 3p21.3 CISH Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure
GeneLoc location for GC03M050618:
(about GC identifiers )
Start:
50,618,924 bp from pter
End:
50,624,207 bp from pter
Size:
5,284 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000003.10 NT_022517.17 Proteins for CISH
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: CISH_HUMAN, Q9NSE2 (See
protein sequence )Recommended Name: Cytokine-inducible SH2-containing protein Size : 258 amino acids; 28663 Da
Subunit : Stably associated with the tyrosine-phosphorylated IL3 receptor beta chain andtyrosine-phosphorylated EPO receptor (EPOR)
Secondary accessions : Q9NS38 Q9Y5R1Alternative splicing : 3 isoforms : Q9NSE2-1 Q9NSE2-2 Q9NSE2-3
Post-translational modifications:
Association with EPOR may target the protein for proteolysis by the ubiquitin-dependent proteasomepathway. CIS is mainly monubiquitinated (37 kDa form) but may also exist in a polyubiquitinatedform (45 kDa)1
REFSEQ proteins (2 alternative transcripts):
NP_037456.5 NP_659508.1 ENSEMBL proteins: ENSP00000294173 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005575 cellular_component
ND -- GO:0005886 plasma membrane
IEA --
About this table Antibodies for CISH: Assays for CISH:
Protein
Domains/ Families for CISH(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q9NSE2 ProtoNet protein and cluster: Q9NSE2
2 Blocks protein families : IPB000980 SH2 domain signature IPB001496 SOCS protein UniProtKB/Swiss-Prot: CISH_HUMAN, Q9NSE2 Similarity : Contains 1 SH2 domainSimilarity : Contains 1 SOCS box domain
Gene Function for CISH
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_013324 Applied Biosystems Silencer ® siRNAs for CISH Sigma-Aldrich siRNA and siRNA Panels for CISH Sigma-Aldrich shRNA Panels and shRNA for CISH Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_013324                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_013324                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_013324  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_013324 UniProtKB/Swiss-Prot: CISH_HUMAN, Q9NSE2 Function : SOCS family proteins form part of a classical negative feedback system that regulatescytokine signal transduction. CIS is involved in the negative regulation of cytokines that signalthrough the JAK-STAT5 pathway such as erythropoietin, prolactin and interleukin 3 (IL3) receptor.Inhibits STAT5 trans-activation by suppressing its tyrosine phosphorylation. May be asubstrate-recognition component of a SCF-like ECS (Elongin BC-CUL2/5-SOCS-box protein) E3ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomaldegradation of target proteins (By similarity) Induction : By a subset of cytokines including erythropoietin (EPO)
Genatlas biochemistry entry for CISH :cytokine inducible SH2-containing protein gene,binding to IL3 and EPOR,predominantly expressed infetal and adult liver and kidney,negative regulator of the JAK signaling pathway 2 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0003674 molecular_function
ND -- GO:0005515 protein binding
IEA --
About this table
Pathways & Interactions for CISH
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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3 Sigma-Aldrich "Your Favorite Gene" Pathways for CISH (Your Favorite Gene powered by Ingenuity) UniProtKB/Swiss-Prot: CISH_HUMAN, Q9NSE2 Pathway : Protein modification; protein ubiquitination
Gene Network CentralTM Interacting Genes and Proteins Network for CISH 3 Interacting proteins for CISH (Q9NSE2 2 ) via UniProtKB, MINT, and/or STRING About this table 5 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0001558 regulation of cell growth
NAS 9465889 GO:0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
IEA -- GO:0007242 intracellular signaling cascade
NAS 10902923 GO:0009968 negative regulation of signal transduction
IEA -- GO:0019941 modification-dependent protein catabolic process
IEA --
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Drugs & Compounds for CISH (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for CISH 10/15 Novoseek chemical compound relationships for CISH gene (see all 15
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
tyrosine
61.44
44
9129017 (3), 7796808 (2), 16033816 (2), 12783885 (2) (see all 31 )
gp 130
51.66
1
16630890 (1)
ifn-alpha
43.50
6
11340296 (3), 16943383 (1), 18616672 (1)
phosphotyrosine
36.91
7
16426581 (2), 16266868 (1), 16630890 (1), 10514520 (1) (see all 5 )
inositol 1,4,5 trisphosphate
34.12
2
17140548 (1), 15138280 (1)
calcium
25.83
67
15937149 (5), 15226409 (4), 12765682 (3), 15036949 (3) (see all 23 )
ryanodine
25.34
2
19154741 (1)
lipid
2.46
1
15654916 (1)
phosphoinositide
0.00
2
17142110 (1), 12379181 (1)
lysine
0.00
1
15899873 (1)
About this table
Transcripts for CISH(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_013324 Sigma-Aldrich siRNA and siRNA Panels for CISH Sigma-Aldrich shRNA Panels and shRNA for CISH Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_013324 NM_145071
REFSEQ mRNAs for CISH gene (2 alternative transcripts): NM_013324.5 NM_145071.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_013324 NM_145071
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_013324                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_013324                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_013324  
Additional cDNA sequence: AF132297.2 AK313850.1 BC031590.1 BC064354.1 CR594144.1 CR602225.1 D83532.1
8 DOTS entries : DT.412916 DT.100763677 DT.100763676 DT.91750383 DT.95196283 DT.95196284 DT.97789301 DT.100713022
24/111 AceView cDNA sequences (see all 111
):AW168260 BM923928 AA292305 BG697340 AA427521 CR602225 BC064354 BM917119 AA353819 CR594144 AI928902 AF035947 AW161428 D83532 AI929155 AI917465 AW950888 BM906736 BU634403 BM923316 BQ067143 T40564 AL569851 BI760507
highest scoring ESTs for CISH :AF132297 AI929155 AL543247 AL546401 AW052069 AW161428 BC031590 BC064354 BG697340 BI759267
Unigene Cluster for CISH: Cytokine inducible SH2-containing protein Hs.655334 [show with all ESTs ] Unigene Representative Sequence: NM_013324 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for CISH ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c SP1 :                     SP2 :       -               SP3 :       -     -           SP4 :       -     -   -         SP5 :                    
About this scheme ECgene alternative splicing isoforms for CISH 1 Ensembl transcript including schematic representation : ENST00000348721
Expression for CISH
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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CISH expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CISH 1 / 2 / 3
7 probe-sets matching CISH gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.655334 UniProtKB/Swiss-Prot: CISH_HUMAN, Q9NSE2 Tissue specificity : Expressed in various epithelial tissues. Abundantly expressed in liver andkidney, and to a lesser extent in lung. The tissue distribution of isoforms 1 and 1B is distinct
Orthologs for CISH
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CISH gene from 5/7 species (see all 7
)
About this table Species with no ortholog for CISH ENSEMBL Gene Tree for CISH Paralogs for CISH (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for CISH gene SOCS7 2 SOCS6 2 SOCS2 2
SNPs/Variants for CISH (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for CISH (up to first 250kb)
Disorders & Mutations for CISH
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 602441 UniProtKB/Swiss-Prot: CISH_HUMAN, Q9NSE2
CISH deletion may be involved in the pathogenesis of renal cell carcinomas and of lungcancer since lung and kidney tumors frequently exhibit 3p21.3 deletions
10/35 Novoseek disease relationships for CISH gene (see all 35
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
myeloproliferative disorders
43.33
1
18623127 (1)
insulin resistance
32.43
9
11342531 (2), 15072573 (1), 18171427 (1), 17010638 (1) (see all 5 )
asthma allergic
31.75
3
17266577 (1), 16476192 (1)
leukemia
28.51
2
11268394 (1)
necrosis
25.13
8
15491991 (1), 15757867 (1), 12475383 (1), 17327369 (1) (see all 7 )
inflammation
24.26
9
19041303 (4), 15081412 (1), 15275643 (1), 15153517 (1) (see all 5 )
tumors
20.53
15
15491991 (1), 15757867 (1), 12475383 (1), 16125365 (1) (see all 14 )
cns diseases
20.23
1
14993936 (1)
adenocarcinoma lung
14.29
2
12796816 (2)
prostate cancer
8.83
5
16529812 (1), 12765682 (1), 15138280 (1), 17001312 (1)
About this table
Medical News for CISH (Possibly Related Articles in
Doctor's Guide )
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Publications for CISH (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/285 PubMed articles for CISH gene (see all 285
): Molecular cloning of CISH, chromosome assignment to 3p21.3, and analysis of expression in fetal and adult tissues. (PubMed id 9465889) 2, 3, 4 Uchida K.... Takahashi K. (1997) A novel cytokine-inducible gene CIS encodes an SH2-containing protein that binds to tyrosine-phosphorylated interleukin 3 and erythropoietin receptors. (PubMed id 7796808) 1, 2, 3 Yoshimura A....Miyajima A. (1995) Proteasomes regulate erythropoietin receptor and signal transducer and activator of transcription 5 (STAT5) activation. Possible involvement of the ubiquitinated CIS protein. (PubMed id 9774439) 1, 3, 4 Verdier F.... Mayeux P. (1998) Cloning and characterization of CIS 1b (cytokine inducible SH2- containing protein 1b), an alternative splicing form of CIS 1 gene. (PubMed id 10902923) 1, 3, 4 Jiang C.... Zhao S. (2000) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) cDNA representational difference analysis of human neutrophils stimulated by GM-CSF. (PubMed id 11032736) 3, 4 Yousefi S.... Jarai G. (2000) Thrombopoietin induces an SH2-containing protein, CIS1, which binds to Mpl: involvement of the ubiquitin proteosome pathway. (PubMed id 10517496) 1, 3 Okabe S....Ohyashiki K. (1999) CIS associates with the interleukin-2 receptor beta chain and inhibits interleukin-2-dependent signaling. (PubMed id 10514520) 1, 3 Aman M.J....Leonard W.J. (1999) Cytokine-inducible SH2-containing protein suppresses PRL signaling by binding the PRL receptor. (PubMed id 11713228) 1, 3 Dif F....Edery M. (2001) The analysis of CIS, SOCS1, SOSC2 and SOCS3 transcript levels in peripheral blood mononuclear cells of systemic lupus erythematosus and rheumatoid arthritis patients. (PubMed id 18820827) 1, 3 Tsao J.T....Lin S.C. (2008)
Search for CISH
(in PubMed ,
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Genome Databases showing CISH
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing CISH
(According to HUGE )
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--
Specialized Databases showing CISH (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for CISH (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for CISH:
Recombinant Proteins (CISH ) Antibodies (CISH )
Search Tocris compounds for CISH
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Aliases for CISH
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009