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Aliases for CISD1 Gene

Aliases for CISD1 Gene

  • CDGSH Iron Sulfur Domain 1 2 3
  • MitoNEET 3 4 6
  • Zinc Finger, CDGSH-Type Domain 1 2 3
  • C10orf70 3 4
  • ZCD1 3 4
  • CDGSH Iron Sulfur Domain-Containing Protein 1 3
  • CDGSH Iron-Sulfur Domain-Containing Protein 1 3
  • Chromosome 10 Open Reading Frame 70 2
  • Zinc Finger CDGSH-Type Domain 1 3
  • MDS029 3

External Ids for CISD1 Gene

Previous HGNC Symbols for CISD1 Gene

  • C10orf70
  • ZCD1

Previous GeneCards Identifiers for CISD1 Gene

  • GC10P059700
  • GC10P060028
  • GC10P054017

Summaries for CISD1 Gene

Entrez Gene Summary for CISD1 Gene

  • This gene encodes a protein with a CDGSH iron-sulfur domain and has been shown to bind a redox-active [2Fe-2S] cluster. The encoded protein has been localized to the outer membrane of mitochondria and is thought to play a role in regulation of oxidation. Genes encoding similar proteins are located on chromosomes 4 and 17, and a pseudogene of this gene is located on chromosome 2. [provided by RefSeq, Feb 2012]

GeneCards Summary for CISD1 Gene

CISD1 (CDGSH Iron Sulfur Domain 1) is a Protein Coding gene. Diseases associated with CISD1 include wolfram syndrome 2. Among its related pathways are Adipogenesis. GO annotations related to this gene include 2 iron, 2 sulfur cluster binding. An important paralog of this gene is CISD2.

UniProtKB/Swiss-Prot for CISD1 Gene

  • Plays a key role in regulating maximal capacity for electron transport and oxidative phosphorylation (By similarity). May be involved in Fe-S cluster shuttling and/or in redox reactions.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CISD1 Gene

Genomics for CISD1 Gene

Regulatory Elements for CISD1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CISD1 Gene

Start:
58,269,058 bp from pter
End:
58,290,992 bp from pter
Size:
21,935 bases
Orientation:
Plus strand

Genomic View for CISD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CISD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CISD1 Gene

Proteins for CISD1 Gene

  • Protein details for CISD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NZ45-CISD1_HUMAN
    Recommended name:
    CDGSH iron-sulfur domain-containing protein 1
    Protein Accession:
    Q9NZ45
    Secondary Accessions:
    • Q1X902

    Protein attributes for CISD1 Gene

    Size:
    108 amino acids
    Molecular mass:
    12199 Da
    Cofactor:
    Name=[2Fe-2S] cluster; Xref=ChEBI:CHEBI:49601; Note=Binds 1 [2Fe-2S] cluster per subunit. The [2Fe-2S] cluster is redox-active and pH labile and is significantly less stable at pH 4.5 as compared with pH 7.0.;
    Quaternary structure:
    • Homodimer.
    Miscellaneous:
    • Binds pioglitazone, an anti-diabetes drug. Binding increases the stability of the 2Fe-2S cluster

    Three dimensional structures from OCA and Proteopedia for CISD1 Gene

neXtProt entry for CISD1 Gene

Proteomics data for CISD1 Gene at MOPED

Post-translational modifications for CISD1 Gene

  • Ubiquitinated by PARK2 during mitophagy, leading to its degradation and enhancement of mitophagy. Deubiquitinated by USP30.
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CISD1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CISD1 Gene

Domains for CISD1 Gene

Gene Families for CISD1 Gene

HGNC:
  • CISD :CDGSH iron sulfur domain containing

Protein Domains for CISD1 Gene

Suggested Antigen Peptide Sequences for CISD1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NZ45

UniProtKB/Swiss-Prot:

CISD1_HUMAN :
  • Q9NZ45
Family:
  • Belongs to the CISD protein family.
genes like me logo Genes that share domains with CISD1: view

Function for CISD1 Gene

Molecular function for CISD1 Gene

UniProtKB/Swiss-Prot BiophysicochemicalProperties: Redox potential: E is 0 +/- 10 mV for 2Fe-2S at pH 7.5. {ECO:0000269 PubMed:19580816};
UniProtKB/Swiss-Prot Function: Plays a key role in regulating maximal capacity for electron transport and oxidative phosphorylation (By similarity). May be involved in Fe-S cluster shuttling and/or in redox reactions.
UniProtKB/Swiss-Prot Induction: Expression is down-regulated by glibenclamide and 5-[(4-carboxyphenyl)methylene]-2-thioxo-3-(3-trifluoromethyl)phenyl-4-thiazolidinone (CFTR(inh)172), and up-regulated by cAMP/isoproterenol/IBMX, components that inhibit and stimulate chloride transport activity respectively.

Gene Ontology (GO) - Molecular Function for CISD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0046872 metal ion binding IEA --
GO:0051537 2 iron, 2 sulfur cluster binding IEA --
genes like me logo Genes that share ontologies with CISD1: view

Phenotypes for CISD1 Gene

MGI mutant phenotypes for CISD1:
inferred from 1 alleles
GenomeRNAi human phenotypes for CISD1:
genes like me logo Genes that share phenotypes with CISD1: view

Animal Model Products

CRISPR Products

miRNA for CISD1 Gene

miRTarBase miRNAs that target CISD1

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CISD1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for CISD1 Gene

Localization for CISD1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CISD1 Gene

Mitochondrion outer membrane; Single-pass type III membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CISD1 Gene COMPARTMENTS Subcellular localization image for CISD1 gene
Compartment Confidence
mitochondrion 5
extracellular 2
cytosol 1
golgi apparatus 1
nucleus 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for CISD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion ISS --
GO:0005741 mitochondrial outer membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0043231 intracellular membrane-bounded organelle --
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with CISD1: view

Pathways for CISD1 Gene

SuperPathways for CISD1 Gene

Superpath Contained pathways
1 Adipogenesis
genes like me logo Genes that share pathways with CISD1: view

Pathways by source for CISD1 Gene

1 BioSystems pathway for CISD1 Gene

Gene Ontology (GO) - Biological Process for CISD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0043457 regulation of cellular respiration IEA --
genes like me logo Genes that share ontologies with CISD1: view

Compounds for CISD1 Gene

(1) HMDB Compounds for CISD1 Gene

Compound Synonyms Cas Number PubMed IDs
Iron
  • Armco iron
7439-89-6
genes like me logo Genes that share compounds with CISD1: view

Transcripts for CISD1 Gene

Unigene Clusters for CISD1 Gene

CDGSH iron sulfur domain 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CISD1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for CISD1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CISD1 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c · 6d ^ 7
SP1: - - - - -
SP2: - -
SP3:
SP4: - - -
SP5: - -

Relevant External Links for CISD1 Gene

GeneLoc Exon Structure for
CISD1
ECgene alternative splicing isoforms for
CISD1

Expression for CISD1 Gene

mRNA expression in normal human tissues for CISD1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for CISD1 Gene

SOURCE GeneReport for Unigene cluster for CISD1 Gene Hs.370102

mRNA Expression by UniProt/SwissProt for CISD1 Gene

Q9NZ45-CISD1_HUMAN
Tissue specificity: Expression is reduced in cells derived from cystic fibrosis patients.
genes like me logo Genes that share expressions with CISD1: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for CISD1 Gene

Orthologs for CISD1 Gene

This gene was present in the common ancestor of animals.

Orthologs for CISD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CISD1 35
  • 100 (n)
  • 100 (a)
CISD1 36
  • 100 (a)
OneToMany
CISD1 36
  • 100 (a)
OneToMany
cow
(Bos Taurus)
Mammalia CISD1 35
  • 92.77 (n)
  • 92.45 (a)
CISD1 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CISD1 36
  • 91 (a)
OneToOne
LOC102154780 35
  • 93.2 (n)
  • 91.26 (a)
mouse
(Mus musculus)
Mammalia Cisd1 35
  • 80.86 (n)
  • 86.11 (a)
Cisd1 16
Cisd1 36
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CISD1 36
  • 78 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CISD1 36
  • 78 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cisd1 35
  • 80.56 (n)
  • 86.11 (a)
chicken
(Gallus gallus)
Aves CISD1 35
  • 75.62 (n)
  • 77.78 (a)
CISD1 36
  • 78 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CISD1 36
  • 73 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.8356 35
tropical clawed frog
(Silurana tropicalis)
Amphibia cisd1 35
  • 72.88 (n)
  • 73.53 (a)
Str.5969 35
zebrafish
(Danio rerio)
Actinopterygii -- 35
cisd1 35
  • 66.35 (n)
  • 67.62 (a)
cisd1 36
  • 66 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG1458 36
  • 32 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea W02B12.15 35
  • 58.04 (n)
  • 54.12 (a)
W02B12.15 36
  • 35 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2896 36
  • 29 (a)
OneToMany
Species with no ortholog for CISD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CISD1 Gene

ENSEMBL:
Gene Tree for CISD1 (if available)
TreeFam:
Gene Tree for CISD1 (if available)

Paralogs for CISD1 Gene

Paralogs for CISD1 Gene

Selected SIMAP similar genes for CISD1 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for CISD1 Gene

genes like me logo Genes that share paralogs with CISD1: view

Variants for CISD1 Gene

Sequence variations from dbSNP and Humsavar for CISD1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs1047641 -- 58,287,862(+) CCAAC(C/T)TCATG utr-variant-3-prime
rs1416764 -- 58,280,591(+) ACATC(A/G)GGGTT intron-variant
rs1416765 -- 58,287,317(+) CATAA(A/G)AAAGG intron-variant
rs1550773 -- 58,284,681(+) TTCTT(A/T)ATATT intron-variant
rs1815610 -- 58,278,225(+) TACTA(C/T)CACTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CISD1 Gene

Variant ID Type Subtype PubMed ID
nsv895561 CNV Gain 21882294

Relevant External Links for CISD1 Gene

HapMap Linkage Disequilibrium report
CISD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CISD1 Gene

Disorders for CISD1 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for CISD1 Gene including...

Search for CISD1 Gene in MalaCards »

Relevant External Links for CISD1

Genetic Association Database (GAD)
CISD1
Human Genome Epidemiology (HuGE) Navigator
CISD1
genes like me logo Genes that share disorders with CISD1: view

No data available for UniProtKB/Swiss-Prot for CISD1 Gene

Publications for CISD1 Gene

  1. MitoNEET is an iron-containing outer mitochondrial membrane protein that regulates oxidative capacity. (PMID: 17376863) Wiley S.E. … Dixon J.E. (Proc. Natl. Acad. Sci. U.S.A. 2007) 2 3 4
  2. The outer mitochondrial membrane protein mitoNEET contains a novel redox-active 2Fe-2S cluster. (PMID: 17584744) Wiley S.E. … Dixon J.E. (J. Biol. Chem. 2007) 2 3 4
  3. Crystal structure of human mitoNEET reveals distinct groups of iron sulfur proteins. (PMID: 17766439) Lin J. … Wang J. (Proc. Natl. Acad. Sci. U.S.A. 2007) 3 4
  4. MitoNEET is a uniquely folded 2Fe 2S outer mitochondrial membrane protein stabilized by pioglitazone. (PMID: 17766440) Paddock M.L. … Jennings P.A. (Proc. Natl. Acad. Sci. U.S.A. 2007) 3 4
  5. Crystallographic studies of human MitoNEET. (PMID: 17905743) Hou X. … Gong W. (J. Biol. Chem. 2007) 3 4

Products for CISD1 Gene

Sources for CISD1 Gene

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