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Aliases for CIRBP-AS1 Gene

Subcategory (RNA class) for CIRBP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CIRBP-AS1 Gene

  • CIRBP Antisense RNA 1 2 3 4 5
  • CIRBP Antisense RNA 1 (Non-Protein Coding) 2 3
  • C19orf23 3 4
  • Chromosome 19 Open Reading Frame 23 2
  • CIRBP Antisense Gene Protein 1 4

External Ids for CIRBP-AS1 Gene

Previous HGNC Symbols for CIRBP-AS1 Gene

  • C19orf23

Summaries for CIRBP-AS1 Gene

GeneCards Summary for CIRBP-AS1 Gene

CIRBP-AS1 (CIRBP Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CIRBP-AS1 Gene

Genomics for CIRBP-AS1 Gene

Regulatory Elements for CIRBP-AS1 Gene


Promoters for CIRBP-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CIRBP-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CIRBP-AS1 Gene

Chromosome:
19
Start:
1,267,471 bp from pter
End:
1,270,260 bp from pter
Size:
2,790 bases
Orientation:
Minus strand

Genomic View for CIRBP-AS1 Gene

Genes around CIRBP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CIRBP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CIRBP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CIRBP-AS1 Gene

Proteins for CIRBP-AS1 Gene

  • Protein details for CIRBP-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TBR5-CSAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein CIRBP-AS1
    Protein Accession:
    Q8TBR5

    Protein attributes for CIRBP-AS1 Gene

    Size:
    109 amino acids
    Molecular mass:
    12399 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CIRBP-AS1 Gene

Proteomics data for CIRBP-AS1 Gene at MOPED

Post-translational modifications for CIRBP-AS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CIRBP-AS1 Gene

Domains & Families for CIRBP-AS1 Gene

Protein Domains for CIRBP-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CIRBP-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CIRBP-AS1 Gene

Function for CIRBP-AS1 Gene

genes like me logo Genes that share phenotypes with CIRBP-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CIRBP-AS1 Gene

Localization for CIRBP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CIRBP-AS1 Gene

Pathways & Interactions for CIRBP-AS1 Gene

SuperPathways for CIRBP-AS1 Gene

No Data Available

Interacting Proteins for CIRBP-AS1 Gene

Gene Ontology (GO) - Biological Process for CIRBP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CIRBP-AS1 Gene

Drugs & Compounds for CIRBP-AS1 Gene

No Compound Related Data Available

Transcripts for CIRBP-AS1 Gene

mRNA/cDNA for CIRBP-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CIRBP-AS1 Gene

CIRBP antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CIRBP-AS1 Gene

No ASD Table

Relevant External Links for CIRBP-AS1 Gene

GeneLoc Exon Structure for
CIRBP-AS1
ECgene alternative splicing isoforms for
CIRBP-AS1

Expression for CIRBP-AS1 Gene

mRNA expression in normal human tissues for CIRBP-AS1 Gene

SOURCE GeneReport for Unigene cluster for CIRBP-AS1 Gene Hs.438829

genes like me logo Genes that share expression patterns with CIRBP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CIRBP-AS1 Gene

Orthologs for CIRBP-AS1 Gene

Evolution for CIRBP-AS1 Gene

ENSEMBL:
Gene Tree for CIRBP-AS1 (if available)
TreeFam:
Gene Tree for CIRBP-AS1 (if available)

No data available for Orthologs for CIRBP-AS1 Gene

Paralogs for CIRBP-AS1 Gene

No data available for Paralogs for CIRBP-AS1 Gene

Variants for CIRBP-AS1 Gene

Sequence variations from dbSNP and Humsavar for CIRBP-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs34643983 -- 1,267,191(+) ATGAA(-/A)GGGGT downstream-variant-500B
rs145456740 -- 1,267,044(+) CGAGG(C/T)GTCTG downstream-variant-500B
rs190442409 -- 1,267,193(+) TGAAG(A/G)GGTCC downstream-variant-500B
rs114832851 -- 1,267,085(+) CTCGA(C/G)CCAAA downstream-variant-500B
rs566407979 -- 1,267,005(+) GGCCG(A/C)GCAGG downstream-variant-500B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for CIRBP-AS1 Gene

Disorders for CIRBP-AS1 Gene

Relevant External Links for CIRBP-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CIRBP-AS1

No disorders were found for CIRBP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CIRBP-AS1 Gene

Publications for CIRBP-AS1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3

Products for CIRBP-AS1 Gene

Sources for CIRBP-AS1 Gene

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