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Aliases for CIRBP-AS1 Gene

Subcategory (RNA class) for CIRBP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CIRBP-AS1 Gene

  • CIRBP Antisense RNA 1 2 3 4 5
  • CIRBP Antisense RNA 1 (Non-Protein Coding) 2 3
  • C19orf23 3 4
  • Chromosome 19 Open Reading Frame 23 2
  • CIRBP Antisense Gene Protein 1 4

External Ids for CIRBP-AS1 Gene

Previous HGNC Symbols for CIRBP-AS1 Gene

  • C19orf23

Summaries for CIRBP-AS1 Gene

GeneCards Summary for CIRBP-AS1 Gene

CIRBP-AS1 (CIRBP Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CIRBP-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CIRBP-AS1 Gene

Genomics for CIRBP-AS1 Gene

Regulatory Elements for CIRBP-AS1 Gene


Promoters for CIRBP-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000105654 460 1601 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for CIRBP-AS1 Gene

Chromosome:
19
Start:
1,267,471 bp from pter
End:
1,270,260 bp from pter
Size:
2,790 bases
Orientation:
Minus strand

Genomic View for CIRBP-AS1 Gene

Genes around CIRBP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CIRBP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CIRBP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CIRBP-AS1 Gene

Proteins for CIRBP-AS1 Gene

  • Protein details for CIRBP-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TBR5-CSAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein CIRBP-AS1
    Protein Accession:
    Q8TBR5

    Protein attributes for CIRBP-AS1 Gene

    Size:
    109 amino acids
    Molecular mass:
    12399 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CIRBP-AS1 Gene

Post-translational modifications for CIRBP-AS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CIRBP-AS1 Gene

Domains & Families for CIRBP-AS1 Gene

Protein Domains for CIRBP-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CIRBP-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CIRBP-AS1 Gene

Function for CIRBP-AS1 Gene

genes like me logo Genes that share phenotypes with CIRBP-AS1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CIRBP-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CIRBP-AS1 Gene

Localization for CIRBP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CIRBP-AS1 Gene

Pathways & Interactions for CIRBP-AS1 Gene

SuperPathways for CIRBP-AS1 Gene

No Data Available

Interacting Proteins for CIRBP-AS1 Gene

Gene Ontology (GO) - Biological Process for CIRBP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CIRBP-AS1 Gene

Drugs & Compounds for CIRBP-AS1 Gene

No Compound Related Data Available

Transcripts for CIRBP-AS1 Gene

mRNA/cDNA for CIRBP-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CIRBP-AS1 Gene

CIRBP antisense RNA 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CIRBP-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CIRBP-AS1 Gene

No ASD Table

Relevant External Links for CIRBP-AS1 Gene

GeneLoc Exon Structure for
CIRBP-AS1
ECgene alternative splicing isoforms for
CIRBP-AS1

Expression for CIRBP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CIRBP-AS1 Gene

SOURCE GeneReport for Unigene cluster for CIRBP-AS1 Gene:

Hs.438829
genes like me logo Genes that share expression patterns with CIRBP-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CIRBP-AS1 Gene

Orthologs for CIRBP-AS1 Gene

Evolution for CIRBP-AS1 Gene

ENSEMBL:
Gene Tree for CIRBP-AS1 (if available)
TreeFam:
Gene Tree for CIRBP-AS1 (if available)

No data available for Orthologs for CIRBP-AS1 Gene

Paralogs for CIRBP-AS1 Gene

No data available for Paralogs for CIRBP-AS1 Gene

Variants for CIRBP-AS1 Gene

Sequence variations from dbSNP and Humsavar for CIRBP-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000552140 -- 1,269,140(+) TGGAG(A/G)ACTGC intron-variant, upstream-variant-2KB
rs1000665216 -- 1,268,990(+) GACAC(C/T)CAGAA intron-variant, upstream-variant-2KB
rs1001218200 -- 1,271,878(+) TGTGT(C/T)CCCAG intron-variant, upstream-variant-2KB
rs1001336262 -- 1,268,903(+) TGACA(G/T)CCGGG intron-variant, upstream-variant-2KB
rs1001490388 -- 1,271,825(+) GCTGG(G/T)GGAGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CIRBP-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv136n111 CNV deletion 26073780
esv2758743 CNV gain+loss 17122850
esv3643389 CNV gain 21293372
nsv1055164 CNV gain 25217958
nsv1058677 CNV loss 25217958
nsv1060536 CNV gain 25217958
nsv1160555 CNV deletion 26073780
nsv470103 CNV gain 18288195
nsv470104 CNV loss 18288195
nsv828368 CNV gain 20364138
nsv828371 CNV loss 20364138
nsv953941 CNV deletion 24416366
nsv9662 CNV gain 18304495

Relevant External Links for CIRBP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CIRBP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CIRBP-AS1 Gene

Disorders for CIRBP-AS1 Gene

Relevant External Links for CIRBP-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CIRBP-AS1

No disorders were found for CIRBP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CIRBP-AS1 Gene

Publications for CIRBP-AS1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60
  3. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P … Vidal M (Genomics 2007) 3 60
  4. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J … Lucas SM (Nature 2004) 4 60

Products for CIRBP-AS1 Gene

Sources for CIRBP-AS1 Gene

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