CILP2 Gene
protein-coding GIFtS : 47
GCID: GC19 P019649
cartilage intermediate layer protein 2
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Aliasesfor CILP2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Cartilage Intermediate Layer Protein 2 1 2 CILP-22 3 MGC457711 CLIP-22 Cartilage Intermediate Layer Protein-Like Protein 22
Export aliases for CILP2 gene to outside databases Previous GC identifers: GC19P019473 GC19P019511 GC19P019211
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Summariesfor CILP2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: CILP2_HUMAN, Q8IUL8 Function : May play a role in cartilage scaffolding (By similarity)
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Genomic Viewsfor CILP2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000019.9 NC_018930.1 NT_011295.11 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CILP2 gene promoter: HSF1 (long) CUTL1 E47 Egr-2 E2F-1 CP2 E2F HSF1short ATF6 Other transcription factors Search SABiosciences Chromatin IP Primers for CILP2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CILP2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 19p13.11 Ensembl cytogenetic band: 19p13.11 HGNC cytogenetic band: 19p13.11 CILP2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19P019649: view genomic region
(about GC identifiers )
Start:
19,649,057 bp from pter
End:
19,657,468 bp from pter
Size:
8,412 bases
Orientation:
plus strand
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Proteinsfor CILP2 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: CILP2_HUMAN, Q8IUL8 (See
protein sequence )Recommended Name: Cartilage intermediate layer protein 2 precursor Size : 1156 amino acids; 126291 Da
Subcellular location : Secreted, extracellular space, extracellular matrix (By similarity)
Secondary accessions : Q6NV88 Q8N4A6 Q8WV21Explore the universe of human proteins at neXtProt for CILP2: NX_Q8IUL8 Post-translational modifications:
May be cleaved into 2 chains possibly by a furin-like protease upon or preceding secretion (By similarity)1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q8IUL8 CILP2 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_694953.2 ENSEMBL proteins: ENSP00000291495 ENSP00000467413 Human Recombinant Protein Products for CILP2: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005578 proteinaceous extracellular matrix
IEA --
CILP2 for ontologies About GeneDecksing CILP2 Antibody Products: Assay Products for CILP2:
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Protein
Domains / Familiesfor CILP2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CILP2 for domains About GeneDecksing 5/7 InterPro domains/families (see all 7 ):
Graphical View of Domain Structure for InterPro Entry Q8IUL8 ProtoNet protein and cluster: Q8IUL8
3 Blocks protein families : IPB003598 Immunoglobulin C-2 type IPB003599 Immunoglobulin subtype IPB008085 Thrombospondin type 1 repeat signature UniProtKB/Swiss-Prot: CILP2_HUMAN, Q8IUL8 Similarity : Contains 1 Ig-like C2-type (immunoglobulin-like) domainSimilarity : Contains 1 TSP type-1 domain
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Functionfor CILP2 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: CILP2_HUMAN, Q8IUL8 Function : May play a role in cartilage scaffolding (By similarity)
Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view) : About this table
CILP2 for ontologies About GeneDecksing Phenotypes: 1 GenomeRNAi human phenotype for CILP2 :Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CILP2 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CILP2 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CILP2 (NM_153221 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CILP2 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat CILP2
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CILP2
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Pathways & Interactionsfor CILP2 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CILP2
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Drugs & Compoundsfor CILP2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for CILP2 Search CenterWatch for drugs/clinical trials and news about CILP2
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Transcriptsfor CILP2 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for CILP2 gene: NM_153221.2 Unigene Cluster for CILP2:
Cartilage intermediate layer protein 2 Hs.279574 [show with all ESTs ] Unigene Representative Sequence: AK127735 3 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000291495 (uc002nmv.4 uc002nmw.4 ) ENST00000586018 ENST00000588333 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CILP2 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CILP2 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CILP2 (NM_153221 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CILP2 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat CILP2
Additional cDNA sequence: AF542080.1 AK127735.1 AK314213.1 BC018939.2 BC034926.1 BC068256.1
3 DOTS entries : DT.100031141 DT.101976170
DT.97844737 24/27 AceView cDNA sequences (see all 27 ):
BC018939 AK127735 BC034926 BQ181405 BQ181948 BI196652 BQ182788 BG929309 BC068256 BX112879 BG928970 NM_153221 BX280777 BQ181896 AF542080 BQ181874 BQ181998 CN479743 AI073387 BF353731 BI559947 CO245313 BF313161 BF310577 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for CILP2 About this scheme ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b · 9c ^ 10a · 10b SP1 :           -       -                 SP2 :       -     -       -                 SP3 :                                 SP4 :                           -      
ECgene alternative splicing isoforms for CILP2
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Expression for CILP2 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section CILP2 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CGGGGGAGGCAbout this image CILP2 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See CILP2 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for CILP2 SOURCE GeneReport for Unigene cluster: Hs.279574 UniProtKB/Swiss-Prot: CILP2_HUMAN, Q8IUL8 Tissue specificity : Expressed in articular chondrocytes but not in knee meniscal cartilage cells SABiosciences Custom PCR Arrays for CILP2 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CILP2Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat CILP2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CILP2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CILP2 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CILP2
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Orthologsfor CILP2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for CILP2 gene from 4/11 species (see all 11 ) About this table
ENSEMBL Gene Tree for CILP2 (if available)TreeFam Gene Tree for CILP2 (if available)
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Paralogsfor CILP2 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for CILP2 gene CILP 2 1 SIMAP similar gene for CILP2 using alignment to 2 protein entries: CILP2_HUMAN (see all proteins ):CILP
CILP2 for paralogs About GeneDecksing
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Genomic Variantsfor CILP2 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 19 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for CILP2 (19649057 - 19657468 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for CILP2: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CILP2
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Disorders
/ Diseasesfor CILP2 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CILP2 for disorders About GeneDecksing
OMIM gene information: 612419
OMIM disorders : --3 diseases for CILP2 : About MalaCards hypertriglyceridemia osteoarthritis cholesterol Human Genome Epidemiology (HuGE) Navigator: CILP2 (6 documents) Export disorders for CILP2 gene to outside databases
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Publicationsfor CILP2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for CILP2 gene, integrated from 9 sources (see all 16 ): (articles sorted by number of sources associating them with CILP2) Utopia : connect your pdf to the dynamic world of online information
One of two chondrocyte-expressed isoforms of cartilage intermediate- layer protein functions as an insulin-like growth factor 1 antagonist. (PubMed id 12746903) 1 , 2 , 9 Johnson K.... Terkeltaub R. (2003) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 , 3 Strausberg R.L....Marra M.A. (2002) Cartilage intermediate layer protein 2 (CILP-2) is ex pressed in articular and meniscal cartilage and down-regulated in experimental osteoarthritis. (PubMed id 21880736) 1 Bernardo B.C....Bateman J.F. (2011) Triglyceride level-influencing functional variants of the ANGPTL3, CILP2, and TRIB1 loci in ischemic stroke. (PubMed id 21691831) 1 JA!romi L....Melegh B. (2011) Sex-specific association of rs16996148 SNP in the NCAN /CILP2/PBX4 and serum lipid levels in the Mulao and Han populations. (PubMed id 22208664) 1 Yan T.T....Pan S.L. (2011) Genetic variants influencing circulating lipid levels and risk of coronary artery disease. (PubMed id 20864672) 1 Waterworth D.M....Sandhu M.S. (2010) Biological, clinical and population relevance of 95 l oci for blood lipids. (PubMed id 20686565) 1 Teslovich T.M....Kathiresan S. (2010) Pharmacogenetic analysis of lipid responses to rosuva statin in Chinese patients. (PubMed id 20679960) 1 Hu M....Tomlinson B. (2010) Fine-mapping in African Americans of 8 recently disco vered genetic loci for plasma lipids: the Jackson Heart Study. (PubMed id 20570916) 1 Keebler M.E....Kathiresan S. (2010)
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External Searches for CILP2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CILP2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CILP2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing CILP2 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for CILP2 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for CILP2 gene: Search GeneIP for patents involving CILP2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CILP2 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for CILP2 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for CILP2 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CILP2 OriGene Protein Over-expression Lysate for CILP2 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for CILP2 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CILP2 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CILP2 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for CILP2 OriGene Custom Protein Services for CILP2 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CILP2 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CILP2 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CILP2 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat CILP2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CILP2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CILP2
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CILP2 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CILP2
ThermoFisher Antibodies for CILP2
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat CILP2
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Aliases for CILP2
Databases for CILP2
Disorders / Diseases for CILP2
Domains / Families for CILP2
Drugs / Compounds for CILP2
Expression for CILP2
Function for CILP2
Genomic Views for CILP2
Intellectual Property for CILP2
Orthologs for CILP2
Paralogs for CILP2
Pathways / Interactions for CILP2
Products for CILP2
Proteins for CILP2
Publications for CILP2
Search Box for CILP2
Summaries for CILP2
Transcripts for CILP2
Variants for CILP2
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