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Aliases for CIDEB Gene

Aliases for CIDEB Gene

  • Cell Death-Inducing DFFA-Like Effector B 2 3 4 5

External Ids for CIDEB Gene

Previous GeneCards Identifiers for CIDEB Gene

  • GC14M022146
  • GC14M018561
  • GC14M022764
  • GC14M023844
  • GC14M024774
  • GC14M004889

Summaries for CIDEB Gene

GeneCards Summary for CIDEB Gene

CIDEB (Cell Death-Inducing DFFA-Like Effector B) is a Protein Coding gene. GO annotations related to this gene include identical protein binding. An important paralog of this gene is CIDEC.

UniProtKB/Swiss-Prot for CIDEB Gene

  • Activates apoptosis.

Additional gene information for CIDEB Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CIDEB Gene

Genomics for CIDEB Gene

Regulatory Elements for CIDEB Gene

Enhancers for CIDEB Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14H023550 1 ENCODE 22.2 +760.2 760160 2 HDGF MLX ARNT ZFP64 ZNF133 SIN3A ARID4B GLI4 BRCA1 YY1 ACIN1 KHNYN RNF31 RNA5SP383 PRMT5 TM9SF1 LOC102724814 AP1G2 C14orf93 CIDEB
GH14H024692 1.7 FANTOM5 Ensembl ENCODE dbSUPER 13 -383.0 -382992 3 PKNOX1 ARNT NFRKB MAX BACH1 YBX1 BMI1 PLRG1 EBF1 EED RNA5SP383 GZMB KHNYN ENSG00000259321 TM9SF1 RNF31 CIDEB TINF2 NYNRIN NFATC4
GH14H023544 1.6 FANTOM5 Ensembl ENCODE dbSUPER 12.9 +766.1 766134 2 FOXA2 ARNT ZNF473 KLF17 YBX1 SLC30A9 ZNF366 THAP11 ZNF202 CEBPB ACIN1 KHNYN NGDN RNF31 RNA5SP383 PRMT5 RBM23 PRMT5-AS1 TSSK4 TM9SF1
GH14H023566 1.4 Ensembl ENCODE 12.9 +743.1 743107 3 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 KHNYN RNA5SP383 ACIN1 NGDN TM9SF1 MMP14 TINF2 PRMT5 C14orf93 AP1G2
GH14H024277 1.4 FANTOM5 Ensembl ENCODE 12.8 +31.8 31830 5 CTCF PKNOX1 NFIB MAX EBF1 RAD21 RELA RFX5 POLR2A EED DHRS1 TINF2 NOP9 LTB4R2 CIDEB LTB4R NEDD8 NEDD8-MDP1 GMPR2 MDP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CIDEB on UCSC Golden Path with GeneCards custom track

Promoters for CIDEB Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000066855 230 801 CTCF PKNOX1 ZNF687 NR2F1 BACH1 MAX EBF1 DPF2 E2F1 POLR2A

Genomic Location for CIDEB Gene

Chromosome:
14
Start:
24,305,096 bp from pter
End:
24,311,430 bp from pter
Size:
6,335 bases
Orientation:
Minus strand

Genomic View for CIDEB Gene

Genes around CIDEB on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CIDEB Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CIDEB Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CIDEB Gene

Proteins for CIDEB Gene

  • Protein details for CIDEB Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UHD4-CIDEB_HUMAN
    Recommended name:
    Cell death activator CIDE-B
    Protein Accession:
    Q9UHD4
    Secondary Accessions:
    • D3DS73
    • Q546V8
    • Q9NNW9

    Protein attributes for CIDEB Gene

    Size:
    219 amino acids
    Molecular mass:
    24678 Da
    Quaternary structure:
    • Inhibited by DFFB. Interacts with DFFA and DFFB.

    Three dimensional structures from OCA and Proteopedia for CIDEB Gene

neXtProt entry for CIDEB Gene

Post-translational modifications for CIDEB Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CIDEB Gene

No data available for DME Specific Peptides for CIDEB Gene

Domains & Families for CIDEB Gene

Gene Families for CIDEB Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CIDEB Gene

Suggested Antigen Peptide Sequences for CIDEB Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CIDEB: view

No data available for UniProtKB/Swiss-Prot for CIDEB Gene

Function for CIDEB Gene

Molecular function for CIDEB Gene

GENATLAS Biochemistry:
cell death-inducing DFFA-like effector B,interacting with the DFFA/DFFB complex and putatively involved in apoptotic DNA fragmentation
UniProtKB/Swiss-Prot Function:
Activates apoptosis.

Gene Ontology (GO) - Molecular Function for CIDEB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 12595532
GO:0042802 identical protein binding IPI 12595532
genes like me logo Genes that share ontologies with CIDEB: view
genes like me logo Genes that share phenotypes with CIDEB: view

Animal Models for CIDEB Gene

MGI Knock Outs for CIDEB:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CIDEB
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for CIDEB Gene

Localization for CIDEB Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CIDEB gene
Compartment Confidence
cytosol 5
nucleus 2
extracellular 1
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for CIDEB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005811 lipid particle IBA --
GO:0005829 cytosol IDA 12429024
GO:0048471 perinuclear region of cytoplasm IDA 12595532
genes like me logo Genes that share ontologies with CIDEB: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for CIDEB Gene

Pathways & Interactions for CIDEB Gene

SuperPathways for CIDEB Gene

No Data Available

Gene Ontology (GO) - Biological Process for CIDEB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006915 apoptotic process IDA,IEA 12429024
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage TAS 10619428
GO:0010942 positive regulation of cell death IDA 12595532
GO:0090200 positive regulation of release of cytochrome c from mitochondria IDA 12595532
GO:0097194 execution phase of apoptosis ISS 9564035
genes like me logo Genes that share ontologies with CIDEB: view

No data available for Pathways by source and SIGNOR curated interactions for CIDEB Gene

Drugs & Compounds for CIDEB Gene

No Compound Related Data Available

Transcripts for CIDEB Gene

Unigene Clusters for CIDEB Gene

Cell death-inducing DFFA-like effector b:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CIDEB
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CIDEB Gene

No ASD Table

Relevant External Links for CIDEB Gene

GeneLoc Exon Structure for
CIDEB
ECgene alternative splicing isoforms for
CIDEB

Expression for CIDEB Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CIDEB Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for CIDEB Gene

This gene is overexpressed in CD4 Tcells (30.9), Liver (26.3), and Gallbladder (11.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for CIDEB Gene



Protein tissue co-expression partners for CIDEB Gene

NURSA nuclear receptor signaling pathways regulating expression of CIDEB Gene:

CIDEB

SOURCE GeneReport for Unigene cluster for CIDEB Gene:

Hs.708040

mRNA Expression by UniProt/SwissProt for CIDEB Gene:

Q9UHD4-CIDEB_HUMAN
Tissue specificity: Highly expressed in liver and small intestine and, at lower levels, in colon, kidney and spleen.

Evidence on tissue expression from TISSUES for CIDEB Gene

  • Liver(4.7)
  • Intestine(4.3)
genes like me logo Genes that share expression patterns with CIDEB: view

Primer Products

No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for CIDEB Gene

Orthologs for CIDEB Gene

This gene was present in the common ancestor of chordates.

Orthologs for CIDEB Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CIDEB 33 34
  • 99.54 (n)
dog
(Canis familiaris)
Mammalia CIDEB 34
  • 89 (a)
OneToMany
-- 34
  • 88 (a)
OneToMany
cow
(Bos Taurus)
Mammalia CIDEB 33 34
  • 85.08 (n)
rat
(Rattus norvegicus)
Mammalia Cideb 33
  • 83.58 (n)
mouse
(Mus musculus)
Mammalia Cideb 33 16 34
  • 83.33 (n)
oppossum
(Monodelphis domestica)
Mammalia CIDEB 34
  • 81 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CIDEB 34
  • 50 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cideb 33
  • 61.75 (n)
zebrafish
(Danio rerio)
Actinopterygii cideb 33 34
  • 55.95 (n)
Species where no ortholog for CIDEB was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CIDEB Gene

ENSEMBL:
Gene Tree for CIDEB (if available)
TreeFam:
Gene Tree for CIDEB (if available)

Paralogs for CIDEB Gene

Paralogs for CIDEB Gene

(2) SIMAP similar genes for CIDEB Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with CIDEB: view

Variants for CIDEB Gene

Sequence variations from dbSNP and Humsavar for CIDEB Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000076387 -- 24,308,808(+) CCCAG(A/C)TTCCC upstream-variant-2KB, utr-variant-3-prime, utr-variant-5-prime
rs1000519268 -- 24,309,126(+) TGATC(A/C)CCCTG intron-variant, upstream-variant-2KB, utr-variant-3-prime, utr-variant-5-prime
rs1000657788 -- 24,313,263(+) TTTCT(A/G)TCCTC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001512399 -- 24,310,053(+) CTGGA(C/T)GCCTG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001777583 -- 24,312,013(+) TGTTA(A/T)TGTGA intron-variant, upstream-variant-2KB, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for CIDEB Gene

Variant ID Type Subtype PubMed ID
esv2669637 CNV deletion 23128226
esv3633804 CNV loss 21293372
nsv564058 CNV loss 21841781
nsv564059 CNV loss 21841781
nsv564060 CNV loss 21841781

Variation tolerance for CIDEB Gene

Residual Variation Intolerance Score: 75.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.29; 25.77% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CIDEB Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CIDEB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CIDEB Gene

Disorders for CIDEB Gene

Relevant External Links for CIDEB

Genetic Association Database (GAD)
CIDEB
Human Genome Epidemiology (HuGE) Navigator
CIDEB
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CIDEB

No disorders were found for CIDEB Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CIDEB Gene

Publications for CIDEB Gene

  1. Solution structure of the CIDE-N domain of CIDE-B and a model for CIDE-N/CIDE-N interactions in the DNA fragmentation pathway of apoptosis. (PMID: 10619428) Lugovskoy AA … Wagner G (Cell 1999) 2 3 4 60
  2. Polymorphisms in mitochondrial genes and prostate cancer risk. (PMID: 19064571) Wang L … Thibodeau SN (Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2008) 3 45 60
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  5. Molecular cloning and characterization of CIDE-3, a novel member of the cell-death-inducing DNA-fragmentation-factor (DFF45)-like effector family. (PMID: 12429024) Liang L … Li T (The Biochemical journal 2003) 3 4 60

Products for CIDEB Gene

Sources for CIDEB Gene

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