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Aliases for CICP4 Gene

Subcategory (RNA class) for CICP4 Gene

lncRNA

Aliases for CICP4 Gene

  • Capicua Transcriptional Repressor Pseudogene 4 2 3 5
  • Capicua Homolog (Drosophila) Pseudogene 4 2

External Ids for CICP4 Gene

Previous GeneCards Identifiers for CICP4 Gene

  • GC20M062923

Summaries for CICP4 Gene

GeneCards Summary for CICP4 Gene

CICP4 (Capicua Transcriptional Repressor Pseudogene 4) is a Pseudogene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for CICP4 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for CICP4

Additional gene information for CICP4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for CICP4 Gene

Genomics for CICP4 Gene

Regulatory Elements for CICP4 Gene

Enhancers for CICP4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20H063863 1.4 ENCODE dbSUPER 39.2 +428.2 428169 3 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 SP3 NFYC PPARGC1A DIDO1 PRPF6 GMEB2 CICP4 ENSG00000237371 UCKL1 RTEL1 MIR647 ARFRP1 DNAJC5
GH20H064254 1.4 FANTOM5 ENCODE 30.9 +37.1 37061 2 FOXA2 ZFP64 ARID4B SIN3A DMAP1 ZBTB7B YY1 SLC30A9 GLIS2 ELK1 PRPF6 CICP4 GMEB2 RTEL1 PCMTD2 ARFRP1 TNFRSF6B UCKL1 SAMD10 ENSG00000278171
GH20H063694 1.5 Ensembl ENCODE dbSUPER 27.2 +595.3 595280 7 HNRNPUL1 MLX GLIS2 ZNF207 FOS RUNX3 PAF1 SP3 SP5 MXD4 RTEL1 DIDO1 LIME1 CICP4 PRPF6 GMEB2 UCKL1 YTHDF1 MIR647 SLC2A4RG
GH20H063625 1.4 ENCODE dbSUPER 28.9 +665.2 665226 4 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A SSRP1 DIDO1 GMEB2 MRGBP CICP4 GID8 RTEL1 TPD52L2 FNDC11 PRPF6 STMN3
GH20H063845 1.6 Ensembl ENCODE dbSUPER 20.1 +445.7 445714 3 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A YBX1 FEZF1 DMAP1 ZBTB7B DIDO1 MIR647 UCKL1 PCMTD2 TNFRSF6B RTEL1 ZNF512B PRPF6 ENSG00000237371 CICP4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CICP4 on UCSC Golden Path with GeneCards custom track

Genomic Location for CICP4 Gene

Chromosome:
20
Start:
64,290,187 bp from pter
End:
64,293,040 bp from pter
Size:
2,854 bases
Orientation:
Minus strand

Genomic View for CICP4 Gene

Genes around CICP4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CICP4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CICP4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CICP4 Gene

ORGUL Member Location for CICP4 Gene

ORGUL Member Location for CICP4 gene

Proteins for CICP4 Gene

Post-translational modifications for CICP4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CICP4 Gene

Domains & Families for CICP4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CICP4 Gene

Function for CICP4 Gene

Phenotypes From GWAS Catalog for CICP4 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for CICP4
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CICP4 Gene

Localization for CICP4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CICP4 Gene

Pathways & Interactions for CICP4 Gene

SuperPathways for CICP4 Gene

No Data Available

Interacting Proteins for CICP4 Gene

Gene Ontology (GO) - Biological Process for CICP4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CICP4 Gene

Drugs & Compounds for CICP4 Gene

No Compound Related Data Available

Transcripts for CICP4 Gene

fRNAdb Secondary structures for CICP4 Gene

  • FR205834
  • FR353519
  • FR358256

mRNA/cDNA for CICP4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for CICP4
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CICP4 Gene

No ASD Table

Relevant External Links for CICP4 Gene

GeneLoc Exon Structure for
CICP4
ECgene alternative splicing isoforms for
CICP4

Expression for CICP4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CICP4 Gene

mRNA expression in normal human tissues for CICP4 Gene

NURSA nuclear receptor signaling pathways regulating expression of CICP4 Gene:

CICP4
genes like me logo Genes that share expression patterns with CICP4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CICP4 Gene

Orthologs for CICP4 Gene

Evolution for CICP4 Gene

ENSEMBL:
Gene Tree for CICP4 (if available)
TreeFam:
Gene Tree for CICP4 (if available)

No data available for Orthologs for CICP4 Gene

Paralogs for CICP4 Gene

No data available for Paralogs for CICP4 Gene

Variants for CICP4 Gene

Relevant External Links for CICP4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CICP4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CICP4 Gene

Disorders for CICP4 Gene

No disorders were found for CICP4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CICP4 Gene

Publications for CICP4 Gene

  1. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  2. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for CICP4 Gene

Sources for CICP4 Gene

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