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Aliases for CICP4 Gene

Subcategory (RNA class) for CICP4 Gene

lncRNA

Aliases for CICP4 Gene

  • Capicua Transcriptional Repressor Pseudogene 4 2 3 5
  • Capicua Homolog (Drosophila) Pseudogene 4 2

External Ids for CICP4 Gene

ORGUL Members for CICP4 Gene

Previous GeneCards Identifiers for CICP4 Gene

  • GC20M062923

Summaries for CICP4 Gene

GeneCards Summary for CICP4 Gene

CICP4 (Capicua Transcriptional Repressor Pseudogene 4) is a Pseudogene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for CICP4 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for CICP4

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for CICP4 Gene

Genomics for CICP4 Gene

Regulatory Elements for CICP4 Gene

Enhancers for CICP4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F063947 1.4 Ensembl ENCODE 19.5 +343.0 342963 5.9 PKNOX1 CREB3L1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 YBX1 YY1 PRPF6 CICP4 MIR647 MIR1914 GMEB2 RTEL1 ENSG00000237371 UCKL1 LINC00176 UCKL1-AS1
GH20F063893 1.7 FANTOM5 Ensembl ENCODE 10.9 +395.1 395149 7.8 HDGF PKNOX1 ARNT MLX WRNIP1 ARID4B SIN3A DMAP1 SLC30A9 ZNF766 MIR647 MIR1914 GMEB2 PRPF6 RGS19 RTEL1 OPRL1 ZBTB46 C20orf181 FNDC11
GH20F063536 1.5 FANTOM5 ENCODE 11.4 +755.3 755250 3.4 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 PPDPF PRPF6 PTK6 CICP4 FNDC11 SRMS SAMD10 UCKL1 YTHDF1 ENSG00000275812
GH20F064254 1.4 FANTOM5 ENCODE 11.7 +37.1 37061 2.2 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 ZNF207 FOS PCMTD2 PRPF6 CICP4 ARFRP1 SAMD10 ENSG00000278171
GH20F063844 1.3 Ensembl ENCODE 11.4 +446.1 446140 4.2 HDGF PKNOX1 CREB3L1 ARID4B SIN3A YBX1 FEZF1 DMAP1 YY1 SLC30A9 PRPF6 MIR647 MIR1914 ENSG00000237371 ZBTB46-AS1 CICP4 DNAJC5 TNFRSF6B UCKL1 LIME1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CICP4 on UCSC Golden Path with GeneCards custom track

Genomic Location for CICP4 Gene

Chromosome:
20
Start:
64,290,187 bp from pter
End:
64,293,040 bp from pter
Size:
2,854 bases
Orientation:
Minus strand

Genomic View for CICP4 Gene

Genes around CICP4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CICP4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CICP4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CICP4 Gene

ORGUL Member Location for CICP4 Gene

ORGUL Member Location for CICP4 gene

Proteins for CICP4 Gene

Post-translational modifications for CICP4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CICP4 Gene

Domains & Families for CICP4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CICP4 Gene

Function for CICP4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CICP4 Gene

Localization for CICP4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CICP4 Gene

Pathways & Interactions for CICP4 Gene

SuperPathways for CICP4 Gene

No Data Available

Interacting Proteins for CICP4 Gene

Gene Ontology (GO) - Biological Process for CICP4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CICP4 Gene

Transcripts for CICP4 Gene

fRNAdb Secondary structures for CICP4 Gene

  • FR205834
  • FR353519
  • FR358256

mRNA/cDNA for CICP4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CICP4 Gene

No ASD Table

Relevant External Links for CICP4 Gene

GeneLoc Exon Structure for
CICP4
ECgene alternative splicing isoforms for
CICP4

Expression for CICP4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CICP4 Gene

mRNA expression in normal human tissues for CICP4 Gene

NURSA nuclear receptor signaling pathways regulating expression of CICP4 Gene:

CICP4
genes like me logo Genes that share expression patterns with CICP4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CICP4 Gene

Orthologs for CICP4 Gene

Evolution for CICP4 Gene

ENSEMBL:
Gene Tree for CICP4 (if available)
TreeFam:
Gene Tree for CICP4 (if available)

No data available for Orthologs for CICP4 Gene

Paralogs for CICP4 Gene

No data available for Paralogs for CICP4 Gene

Variants for CICP4 Gene

Relevant External Links for CICP4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CICP4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CICP4 Gene

Disorders for CICP4 Gene

No disorders were found for CICP4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CICP4 Gene

Publications for CICP4 Gene

  1. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  2. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1

Products for CICP4 Gene

Sources for CICP4 Gene

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