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Aliases for CICP13 Gene

Subcategory (RNA class) for CICP13 Gene

lncRNA

Aliases for CICP13 Gene

  • Capicua Transcriptional Repressor Pseudogene 13 2 3 5
  • Capicua Homolog (Drosophila) Pseudogene 13 2

External Ids for CICP13 Gene

ORGUL Members for CICP13 Gene

Previous GeneCards Identifiers for CICP13 Gene

  • GC01P222642
  • GC01P193316

Summaries for CICP13 Gene

GeneCards Summary for CICP13 Gene

CICP13 (Capicua Transcriptional Repressor Pseudogene 13) is a Pseudogene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for CICP13 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for CICP13

Additional gene information for CICP13 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for CICP13 Gene

Genomics for CICP13 Gene

Regulatory Elements for CICP13 Gene

Enhancers for CICP13 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H221739 1.8 FANTOM5 ENCODE dbSUPER 57.9 -726.1 -726108 5 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 CICP13 DUSP10 ENSG00000272750 TAF1A LOC105372945
GH01H222710 1.4 ENCODE dbSUPER 37.2 +244.4 244399 3 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ENSG00000272750 CICP13 BROX TAF1A CAPN2 DISP1 MIA3 FAM177B GC01M222708
GH01H222464 1.8 FANTOM5 Ensembl ENCODE 28.3 -2.5 -2527 1 PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CICP13 TAF1A ENSG00000272750 HHIPL2 MIA3 TRT-TGT2-1
GH01H221714 1.9 FANTOM5 Ensembl ENCODE dbSUPER 20.1 -750.6 -750608 6 HDGF PKNOX1 FOXA2 ARNT ARID4B FEZF1 ZNF2 YY1 ZNF766 REST CICP13 ENSG00000272750 TAF1A MIA3 HHIPL2 MARC1 DUSP10 LOC105372945
GH01H221960 1.8 FANTOM5 Ensembl ENCODE dbSUPER 20.1 -506.5 -506462 2 ATF1 ZNF766 ELK1 ATF7 FOS RUNX3 CAVIN1 REST ZNF592 KAT8 CICP13 ENSG00000272750 TAF1A RNU6-403P DISP1 MIA3 LINC02474 LINC02257 DUSP10 GC01M221887
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CICP13 on UCSC Golden Path with GeneCards custom track

Genomic Location for CICP13 Gene

Chromosome:
1
Start:
222,468,094 bp from pter
End:
222,470,882 bp from pter
Size:
2,789 bases
Orientation:
Plus strand

Genomic View for CICP13 Gene

Genes around CICP13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CICP13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CICP13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CICP13 Gene

ORGUL Member Location for CICP13 Gene

ORGUL Member Location for CICP13 gene

Proteins for CICP13 Gene

Post-translational modifications for CICP13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CICP13 Gene

Domains & Families for CICP13 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CICP13 Gene

Function for CICP13 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for CICP13
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CICP13 Gene

Localization for CICP13 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CICP13 Gene

Pathways & Interactions for CICP13 Gene

SuperPathways for CICP13 Gene

No Data Available

Interacting Proteins for CICP13 Gene

Gene Ontology (GO) - Biological Process for CICP13 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CICP13 Gene

Drugs & Compounds for CICP13 Gene

No Compound Related Data Available

Transcripts for CICP13 Gene

fRNAdb Secondary structures for CICP13 Gene

  • FR084220

mRNA/cDNA for CICP13 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for CICP13
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CICP13 Gene

No ASD Table

Relevant External Links for CICP13 Gene

GeneLoc Exon Structure for
CICP13
ECgene alternative splicing isoforms for
CICP13

Expression for CICP13 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CICP13 Gene

NURSA nuclear receptor signaling pathways regulating expression of CICP13 Gene:

CICP13
genes like me logo Genes that share expression patterns with CICP13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CICP13 Gene

Orthologs for CICP13 Gene

Evolution for CICP13 Gene

ENSEMBL:
Gene Tree for CICP13 (if available)
TreeFam:
Gene Tree for CICP13 (if available)

No data available for Orthologs for CICP13 Gene

Paralogs for CICP13 Gene

No data available for Paralogs for CICP13 Gene

Variants for CICP13 Gene

Relevant External Links for CICP13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CICP13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CICP13 Gene

Disorders for CICP13 Gene

Relevant External Links for CICP13

Genetic Association Database (GAD)
CICP13

No disorders were found for CICP13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CICP13 Gene

Publications for CICP13 Gene

  1. Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness. (PMID: 17903302) Levy D … Mitchell GF (BMC medical genetics 2007) 45 60
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for CICP13 Gene

Sources for CICP13 Gene

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