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Aliases for CIB4 Gene

Aliases for CIB4 Gene

  • Calcium And Integrin Binding Family Member 4 2 3
  • Calcium And Integrin-Binding Family Member 4 3
  • KIP4 3

External Ids for CIB4 Gene

Previous GeneCards Identifiers for CIB4 Gene

  • GC02M026716
  • GC02M026804

Summaries for CIB4 Gene

GeneCards Summary for CIB4 Gene

CIB4 (Calcium And Integrin Binding Family Member 4) is a Protein Coding gene. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is CHP1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CIB4 Gene

Genomics for CIB4 Gene

Regulatory Elements for CIB4 Gene

Genomic Location for CIB4 Gene

Start:
26,581,202 bp from pter
End:
26,641,368 bp from pter
Size:
60,167 bases
Orientation:
Minus strand

Genomic View for CIB4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CIB4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CIB4 Gene

Proteins for CIB4 Gene

  • Protein details for CIB4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0PJX0-CIB4_HUMAN
    Recommended name:
    Calcium and integrin-binding family member 4
    Protein Accession:
    A0PJX0
    Secondary Accessions:
    • B2RU18

    Protein attributes for CIB4 Gene

    Size:
    185 amino acids
    Molecular mass:
    21745 Da
    Quaternary structure:
    • Interacts with ITGA2B (via C-terminus cytoplasmic tail region); the interaction is stabilized/increased in a calcium- and magnesium-dependent manner.
    Miscellaneous:
    • The binding of either calcium or magnesium may significantly increases the structural stability of the protein in comparison to apo-CIB (calcium- and magnesium-free form)

neXtProt entry for CIB4 Gene

Proteomics data for CIB4 Gene at MOPED

Post-translational modifications for CIB4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CIB4 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CIB4 Gene

Domains for CIB4 Gene

Gene Families for CIB4 Gene

HGNC:
  • EFHAND :EF-hand domain containing

Protein Domains for CIB4 Gene

Suggested Antigen Peptide Sequences for CIB4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A0PJX0

UniProtKB/Swiss-Prot:

CIB4_HUMAN :
  • A0PJX0
Domain:
  • Contains 3 EF-hand domains.
genes like me logo Genes that share domains with CIB4: view

Function for CIB4 Gene

Gene Ontology (GO) - Molecular Function for CIB4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IEA --
genes like me logo Genes that share ontologies with CIB4: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CIB4

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CIB4 Gene

Localization for CIB4 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CIB4 Gene COMPARTMENTS Subcellular localization image for CIB4 gene
Compartment Confidence
cytosol 2
extracellular 2
cytoskeleton 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CIB4 Gene

Pathways for CIB4 Gene

SuperPathways for CIB4 Gene

No Data Available

Interacting Proteins for CIB4 Gene

Gene Ontology (GO) - Biological Process for CIB4 Gene

None

No data available for Pathways by source for CIB4 Gene

Transcripts for CIB4 Gene

mRNA/cDNA for CIB4 Gene

Unigene Clusters for CIB4 Gene

Calcium and integrin binding family member 4:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CIB4

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for CIB4

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CIB4 Gene

No ASD Table

Relevant External Links for CIB4 Gene

GeneLoc Exon Structure for
CIB4
ECgene alternative splicing isoforms for
CIB4

Expression for CIB4 Gene

mRNA expression in normal human tissues for CIB4 Gene

mRNA differential expression in normal tissues according to GTEx for CIB4 Gene

This gene is overexpressed in Testis (31.9) and Adrenal Gland (7.6).

SOURCE GeneReport for Unigene cluster for CIB4 Gene Hs.591579

genes like me logo Genes that share expressions with CIB4: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for CIB4 Gene

Orthologs for CIB4 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for CIB4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CIB4 35
  • 98.92 (n)
  • 99.46 (a)
CIB4 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CIB4 35
  • 89.55 (n)
  • 95.68 (a)
CIB4 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CIB4 35
  • 90.58 (n)
  • 93.48 (a)
CIB4 36
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cib4 35
  • 87.57 (n)
  • 91.89 (a)
Cib4 16
Cib4 36
  • 92 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CIB4 36
  • 80 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CIB4 36
  • 79 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cib4 35
  • 87.57 (n)
  • 93.51 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG32812 36
  • 16 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes CNB1 36
  • 27 (a)
OneToMany
Species with no ortholog for CIB4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CIB4 Gene

ENSEMBL:
Gene Tree for CIB4 (if available)
TreeFam:
Gene Tree for CIB4 (if available)

Paralogs for CIB4 Gene

Paralogs for CIB4 Gene

Selected SIMAP similar genes for CIB4 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CIB4: view

Variants for CIB4 Gene

Sequence variations from dbSNP and Humsavar for CIB4 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs732990 -- 26,619,278(-) GCCAG(C/G)CACCT intron-variant
rs744538 -- 26,581,140(+) TGGAA(A/G)GGGCA downstream-variant-500B
rs744539 -- 26,581,254(+) GTGAG(G/T)GTGGG utr-variant-3-prime
rs744540 -- 26,581,275(+) AGTCA(C/T)ACTTC utr-variant-3-prime
rs745348 -- 26,619,089(-) AGTGA(C/T)TATGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CIB4 Gene

Variant ID Type Subtype PubMed ID
esv33316 CNV Loss 17666407
nsv517800 CNV Loss 19592680
esv2719826 CNV Deletion 23290073
esv2663963 CNV Deletion 23128226
nsv2651 CNV Loss 18451855

Relevant External Links for CIB4 Gene

HapMap Linkage Disequilibrium report
CIB4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CIB4 Gene

Disorders for CIB4 Gene

Relevant External Links for CIB4

Genetic Association Database (GAD)
CIB4
Human Genome Epidemiology (HuGE) Navigator
CIB4
genes like me logo Genes that share disorders with CIB4: view

No data available for UniProtKB/Swiss-Prot for CIB4 Gene

Publications for CIB4 Gene

  1. Structural and biochemical characterization of CIB1 delineates a new family of EF-hand-containing proteins. (PMID: 15574431) Gentry H.R. … Parise L.V. (J. Biol. Chem. 2005) 2 3
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  3. Biophysical and structural studies of the human calcium- and integrin-binding protein family: understanding their functional similarities and differences. (PMID: 22779914) Huang H. … Vogel H.J. (Biochem. Cell Biol. 2012) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. Genome-wide association study of periodontal pathogen colonization. (PMID: 22699663) Divaris K. … Offenbacher S. (J. Dent. Res. 2012) 3

Products for CIB4 Gene

Sources for CIB4 Gene

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