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CIB3 Gene

protein-coding   GIFtS: 42
GCID: GC19M016272

Calcium And Integrin Binding Family Member 3

  Search for CIB3
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Calcium And Integrin Binding Family Member 31 2
Kinase-Interacting Protein 32 3
KIP32 3
KIP 32 3
Calcium And Integrin-Binding Family Member 32
DNA-Dependent Protein Kinase Catalytic Subunit-Interacting Protein 32

External Ids:    HGNC: 245801   Entrez Gene: 1172862   Ensembl: ENSG000001419777   OMIM: 6106455   UniProtKB: Q96Q773   

Export aliases for CIB3 gene to outside databases

Previous GC identifers: GC00U914336 GC19M016134 GC19M016135 GC19M015842


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for CIB3 Gene:
This gene product shares a high degree of sequence similarity with DNA-dependent protein kinase catalytic
subunit-interacting protein 2 in human and mouse, and like them may bind the catalytic subunit of DNA-dependent
protein kinases. The exact function of this gene is not known. (provided by RefSeq, Jul 2008)

GeneCards Summary for CIB3 Gene:
CIB3 (calcium and integrin binding family member 3) is a protein-coding gene. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is CIB1.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000019.10  NT_011295.12  NC_018930.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the CIB3 gene promoter:
         ER-alpha   RFX1   Pbx1a   AML1a   POU6F1 (c2)   LUN-1   POU3F2   GATA-2   C/EBPalpha   Pax-3   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCIB3 promoter sequence
   Search Chromatin IP Primers for CIB3

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CIB3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13.12   Ensembl cytogenetic band:  19p13.12   HGNC cytogenetic band: 19p13.12

CIB3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CIB3 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M016272:  view genomic region     (about GC identifiers)

Start:
16,272,179 bp from pter      End:
16,284,336 bp from pter
Size:
12,158 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: CIB3_HUMAN, Q96Q77 (See protein sequence)
Recommended Name: Calcium and integrin-binding family member 3  
Size: 187 amino acids; 21802 Da
Subunit: Interacts with ITGA2B (via C-terminus cytoplasmic tail region); the interaction is stabilized/increased
in a calcium and magnesium-dependent manner
Miscellaneous: The binding of either calcium or magnesium significantly increases the structural stability of the
protein in comparison to apo-CIB (calcium- and magnesium-free form)
Secondary accessions: Q2M1W0

Explore the universe of human proteins at neXtProt for CIB3: NX_Q96Q77

Explore proteomics data for CIB3 at MOPED


See CIB3 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_473454.1  
ENSEMBL proteins: 
 ENSP00000269878   ENSP00000369188   ENSP00000470250  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
EFHAND: EF-hand domain containing

3 InterPro protein domains:
 IPR011992 EF-hand-dom_pair
 IPR002048 EF_hand_dom
 IPR018247 EF_Hand_1_Ca_BS

Graphical View of Domain Structure for InterPro Entry Q96Q77

ProtoNet protein and cluster: Q96Q77

UniProtKB/Swiss-Prot: CIB3_HUMAN, Q96Q77
Similarity: Contains 3 EF-hand domains


CIB3 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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     Gene Ontology (GO): 1 molecular function term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005509calcium ion binding IEA--
     
CIB3 for ontologies           About GeneDecksing


Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
cytosol2
mitochondrion2
cytoskeleton1
extracellular1
golgi apparatus1
nucleus1
peroxisome1
plasma membrane1

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for CIB3
Interactions:

    Search GeneGlobe Interaction Network for CIB3

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for CIB3



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for CIB3 gene: 
NM_054113.2  

Unigene Cluster for CIB3:

Calcium and integrin binding family member 3
Hs.255432  [show with all ESTs]
Unigene Representative Sequence: BC113591
4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000269878(uc002nds.3 uc010eae.3 uc010eaf.3 uc010eag.3)
ENST00000379859 ENST00000597251 ENST00000541493
miRNA
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Additional mRNA sequence: 

AB050868.1 BC069320.1 BC069428.1 BC069524.1 BC112200.1 BC113591.1 

1 DOTS entry:

DT.86847968 

10 AceView cDNA sequences:

NM_054113 AB050868 AW295492 BC069428 BC069320 BC069524 BG197284 BG193757 
BG190679 BG217723 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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CIB3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: AGATTTTAAC
CIB3 Expression
About this image

CIB3 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

CIB3 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.255432
    Custom PCR Arrays for CIB3
Primer
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CIB3

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for CIB3 gene from Selected species (see all 13)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Cib31 , 5 calcium and integrin binding family member 31, 5 85(n)1
94.37(a)1
  8 (34.88 cM)5
2344211  NM_001080812.11  NP_001074281.11 
 722043355 
chicken
(Gallus gallus)
Aves CIB31 calcium and integrin binding family member 3 75.58(n)
82.89(a)
  420151  XM_418267.3  XP_418267.1 
lizard
(Anolis carolinensis)
Reptilia CIB36
calcium and integrin binding family member 3
84(a)
1 ↔ 1
GL343933.1(660-7619)
tropical clawed frog
(Xenopus tropicalis)
Amphibia cib31 calcium and integrin binding family member 3 73.15(n)
81.67(a)
  496710  NM_001011260.1  NP_001011260.1 
zebrafish
(Danio rerio)
Actinopterygii LOC1005356031 calcium and integrin-binding family member 3-like 77.54(n)
82.35(a)
  100535603  XM_003197965.2  XP_003198013.1 
fruit fly
(Drosophila melanogaster)
Insecta CG92366
--
55(a)
1 → many
2R(16767435-16770168)
worm
(Caenorhabditis elegans)
Secernentea calm-16
Protein CALM-1 (calm-1) mRNA, complete cds
46(a)
1 → many
I(9472642-9474794) WBGene00009260


ENSEMBL Gene Tree for CIB3 (if available)
TreeFam Gene Tree for CIB3 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for CIB3 gene
CIB12  PPP3R22  CIB42  PPP3R12  WDR922  ENSG000002733982  CHP22  CIB22  
CHP12  
7 SIMAP similar genes for CIB3 using alignment to 6 protein entries:     CIB3_HUMAN (see all proteins):
CIB2    CIB1    CIB4    PPP3R1    CALM2    HZGJ
PPP3R2

CIB3 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for CIB3 (see all 358)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 19 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1847514241,2
--16271716(+) TGTCAC/TGTTAG 1 -- ds50010--------
rs767457871,2
C--16271717(+) GTCACG/ATTAGG 1 -- ds50013Minor allele frequency- A:0.14NA EA 242
rs1146139871,2
C,F--16271812(+) GGCAGC/GTCTAA 1 -- ds50011Minor allele frequency- G:0.02WA 118
rs1897388301,2
--16271863(+) CTCAGC/GGTTTG 1 -- ds50010--------
rs1808173481,2
C--16272007(+) AGCCTC/TCACAG 1 -- ds50010--------
rs1861522471,2
--16272125(+) TACGCC/TGCCTC 1 -- ds50010--------
rs1910006501,2
--16272143(+) TCTTCC/TAGTTT 1 -- ds50010--------
rs1125663461,2
C--16272268(+) CTCTGT/AGGTGC 1 -- ut311Minor allele frequency- A:0.50CSA 2
rs2012217481,2
--16272295(+) GGAAGA/GTGCTG 2 T I mis10--------
rs774957851,2
C--16272367(+) CTCAAC/AACGCT 1 -- int14Minor allele frequency- A:0.09NA WA EA 360

HapMap Linkage Disequilibrium report for CIB3 (16272179 - 16284336 bp)

Structural Variations
     Database of Genomic Variants (DGV) 1 variation for CIB3:    About this table    
Variant IDTypeSubtypePubMed ID
nsv833767CNV Loss17160897

Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing CIB3
DNA2.0 Custom Variant and Variant Library Synthesis for CIB3

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 610645    OMIM disorders: --


CIB3 for disorders           About GeneDecksing

Genetic Association Database (GAD): CIB3
Human Genome Epidemiology (HuGE) Navigator: CIB3 (1 document)

Export disorders for CIB3 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for CIB3 gene integrated from 10 sources:
(articles sorted by number of sources associating them with CIB3)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Biophysical and structural studies of the human calcium- and integrin-binding protein family: understanding their functional similarities and differences. (PubMed id 22779914)1, 2 Huang H....Vogel H.J. (Biochem. Cell Biol. 2012)
  2. Single-nucleotide polymorphisms, acute rejection, and severity of tubulitis in kidney transplantation, accounting for center-to-center variation. (PubMed id 21085059)4 Israni A....Oetting W.S. (Transplantation 2010)
  3. Structural and biochemical characterization of CIB1 delineates a new family of EF-hand-containing proteins. (PubMed id 15574431)1 Gentry H.R....Parise L.V. (J. Biol. Chem. 2005)
  4. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)2 Grimwood J.... Lucas S.M. (Nature 2004)
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  7. (PubMed id )2 

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 117286 HGNC: 24580 AceView: CIB3 Ensembl:ENSG00000141977 euGenes: HUgn117286
ECgene: CIB3 H-InvDB: CIB3

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for CIB3 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for CIB3 gene:
Search GeneIP for patents involving CIB3

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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 Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

 Novus Tissue Slides
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 See all of Abcam's Antibodies, Kits and Proteins for CIB3
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 Browse SwitchGear 3'UTR luciferase reporter plasmids for CIB3
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 Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CIB3
 inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for CIB3
 inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for CIB3
 LSBio Antibodies in human, mouse, rat for CIB3
Customized transgenic rodents for:
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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