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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CIB3 Gene

protein-coding   GIFtS: 43
GCID: GC19M016272

Calcium And Integrin Binding Family Member 3

  Search for CIB3
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Calcium And Integrin Binding Family Member 31 2
Kinase-Interacting Protein 32 3
KIP32 3
KIP 32 3
Calcium And Integrin-Binding Family Member 32
DNA-Dependent Protein Kinase Catalytic Subunit-Interacting Protein 32

External Ids:    HGNC: 245801   Entrez Gene: 1172862   Ensembl: ENSG000001419777   OMIM: 6106455   UniProtKB: Q96Q773   

Export aliases for CIB3 gene to outside databases

Previous GC identifers: GC00U914336 GC19M016134 GC19M016135 GC19M015842


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for CIB3 Gene:
This gene product shares a high degree of sequence similarity with DNA-dependent protein kinase catalytic
subunit-interacting protein 2 in human and mouse, and like them may bind the catalytic subunit of DNA-dependent
protein kinases. The exact function of this gene is not known. (provided by RefSeq, Jul 2008)

GeneCards Summary for CIB3 Gene: 
CIB3 (calcium and integrin binding family member 3) is a protein-coding gene. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is CIB1.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NT_011295.11  NC_018930.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CIB3 gene promoter:
         ER-alpha   RFX1   Pbx1a   AML1a   POU6F1 (c2)   LUN-1   POU3F2   GATA-2   C/EBPalpha   Pax-3   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCIB3 promoter sequence
   Search SABiosciences Chromatin IP Primers for CIB3

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CIB3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13.12   Ensembl cytogenetic band:  19p13.12   HGNC cytogenetic band: 19p13.12

CIB3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CIB3 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M016272:  view genomic region     (about GC identifiers)

Start:
16,272,179 bp from pter      End:
16,284,336 bp from pter
Size:
12,158 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: CIB3_HUMAN, Q96Q77 (See protein sequence)
Recommended Name: Calcium and integrin-binding family member 3  
Size: 187 amino acids; 21802 Da
Secondary accessions: Q2M1W0

Explore the universe of human proteins at neXtProt for CIB3: NX_Q96Q77

Explore proteomics data for CIB3 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q96Q77

  • CIB3 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    CIB3 Protein Expression
    REFSEQ proteins: NP_473454.1  
    ENSEMBL proteins: 
     ENSP00000269878   ENSP00000369188   ENSP00000470250  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    EFHAND: EF-hand domain containing

    3 InterPro protein domains:
     IPR011992 EF-hand-like_dom
     IPR002048 EF_hand_dom
     IPR018247 EF_Hand_1_Ca_BS

    Graphical View of Domain Structure for InterPro Entry Q96Q77

    ProtoNet protein and cluster: Q96Q77

    UniProtKB/Swiss-Prot: CIB3_HUMAN, Q96Q77
    Similarity: Contains 3 EF-hand domains


    CIB3 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005509calcium ion binding IEA--
         
    CIB3 for ontologies           About GeneDecksing


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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CIB3

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CIB3

    Search CenterWatch for drugs/clinical trials and news about CIB3

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for CIB3 gene: 
    NM_054113.2  

    Unigene Cluster for CIB3:

    Calcium and integrin binding family member 3
    Hs.255432  [show with all ESTs]
    Unigene Representative Sequence: BC113591
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000269878(uc002nds.3 uc010eae.3 uc010eaf.3 uc010eag.3)
    ENST00000379859 ENST00000597251 ENST00000541493
    miRNA
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    Additional mRNA sequence: 

    AB050868.1 BC069320.1 BC069428.1 BC069524.1 BC112200.1 BC113591.1 

    1 DOTS entry:

    DT.86847968 

    10 AceView cDNA sequences:

    AB050868 NM_054113 BC069428 AW295492 BC069524 BC069320 BG197284 BG190679 
    BG217723 BG193757 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CIB3 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AGATTTTAAC
    CIB3 Expression
    About this image


    See CIB3 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CIB3

    SOURCE GeneReport for Unigene cluster: Hs.255432
        SABiosciences Custom PCR Arrays for CIB3
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CIB3

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals and fungi.

    Orthologs for CIB3 gene from 7/13 species (see all 13)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Cib31 , 5 calcium and integrin binding family member 31, 5 85(n)1
    94.37(a)1
      8 (34.88 cM)5
    2344211  NM_001080812.11  NP_001074281.11 
     722043355 
    chicken
    (Gallus gallus)
    Aves CIB31 calcium and integrin binding family member 3 75.58(n)
    82.89(a)
      420151  XM_418267.2  XP_418267.1 
    lizard
    (Anolis carolinensis)
    Reptilia CIB36
    Uncharacterized protein
    84(a)
    1 ↔ 1
    GL343933.1(660-7619)
    zebrafish
    (Danio rerio)
    Actinopterygii LOC1005356031 calcium and integrin-binding family member 3-like 77.54(n)
    82.35(a)
      100535603  XM_003197965.1  XP_003198013.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG92366
    --
    55(a)
    1 → many
    2R(16767435-16770168)
    worm
    (Caenorhabditis elegans)
    Secernentea calm-16
    Protein CALM-1
    46(a)
    1 → many
    I(9472642-9474794)
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes CNB16
    Calcineurin B; the regulatory subunit of calcineur...
    26(a)
    1 → many
    XI(82947-83550)


    ENSEMBL Gene Tree for CIB3 (if available)
    TreeFam Gene Tree for CIB3 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for CIB3 gene
    CIB12  CIB42  CIB22  
    7 SIMAP similar genes for CIB3 using alignment to 6 protein entries:     CIB3_HUMAN (see all proteins):
    CIB2    CIB1    CIB4    PPP3R1    CALM2    HZGJ
    PPP3R2

    CIB3 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/358 SNPs in CIB3 are shown (see all 358)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1847514241,2
    --16271716(+) TGTCAC/TGTTAG 1 -- ds50010--------
    rs767457871,2
    C--16271717(+) GTCACG/ATTAGG 1 -- ds50013Minor allele frequency- A:0.14NA EA 242
    rs1146139871,2
    C,F--16271812(+) GGCAGC/GTCTAA 1 -- ds50011Minor allele frequency- G:0.02WA 118
    rs1897388301,2
    --16271863(+) CTCAGC/GGTTTG 1 -- ds50010--------
    rs1808173481,2
    C--16272007(+) AGCCTC/TCACAG 1 -- ds50010--------
    rs1861522471,2
    --16272125(+) TACGCC/TGCCTC 1 -- ds50010--------
    rs1910006501,2
    --16272143(+) TCTTCC/TAGTTT 1 -- ds50010--------
    rs1125663461,2
    C--16272268(+) CTCTGT/AGGTGC 1 -- ut311Minor allele frequency- A:0.50CSA 2
    rs2012217481,2
    --16272295(+) GGAAGA/GTGCTG 2 T I mis10--------
    rs774957851,2
    C--16272367(+) CTCAAC/AACGCT 1 -- int14Minor allele frequency- A:0.09NA WA EA 360

    HapMap Linkage Disequilibrium report for CIB3 (16272179 - 16284336 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for CIB3:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv833767CNV Loss17160897

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    CIB3 for disorders           About MalaCards
    OMIM gene information: 610645    OMIM disorders: --


    CIB3 for disorders           About GeneDecksing

    Genetic Association Database (GAD): CIB3
    Human Genome Epidemiology (HuGE) Navigator: CIB3 (1 document)

    Export disorders for CIB3 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CIB3 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with CIB3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Biophysical and structural studies of the human calciu m- and integrin-binding protein family: understanding their functional similarit ies and differences. (PubMed id 22779914)1 Huang H....Vogel H.J. (2012)
    2. Single-nucleotide polymorphisms, acute rejection, and severity of tubulitis in kidney transplantation, accounting for center-to-center variation. (PubMed id 21085059)4 Israni A....Oetting W.S. (2010)
    3. Structural and biochemical characterization of CIB1 delineates a new family of EF-hand-containing proteins. (PubMed id 15574431)1 Gentry H.R....Parise L.V. (2005)
    4. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)2 Grimwood J.... Lucas S.M. (2004)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    7. Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )2 Aoki H.... Hino O. (2000)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 117286 HGNC: 24580 AceView: CIB3 Ensembl:ENSG00000141977 euGenes: HUgn117286
    ECgene: CIB3 H-InvDB: CIB3

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CIB3 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for CIB3 gene:
    Search GeneIP for patents involving CIB3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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