Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CIB1 Gene

protein-coding   GIFtS: 57
GCID: GC15M090773

calcium and integrin binding 1 (calmyrin)

 Explore 23 diseases affiliated with
CIB1 via our new
 Human Malady Compendium 
Biological research products
for CIB1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Calcium And Integrin Binding 1 (Calmyrin)1 2     KIP12
CIB1 2 3 5     Calcium And Integrin Binding Protein 12
KIP1 2 3 5     Calcium And Integrin Binding, Protein Kinase Interacting Protein2
SIP2-281 2 3     Calcium And Integrin-Binding Protein 12
Calcium- And Integrin-Binding Protein2 3     Calmyrin3
Kinase-Interacting Protein2 3     DNA-Dependent Protein Kinase Interacting Protein2
CIBP2 3     Snk Interacting Protein 2-282
DNA-PKcs-Interacting Protein2 3     Calmyrin3
SNK-Interacting Protein 2-282 3     PRKDCIP3
CALMYRIN1     

External Ids:    HGNC: 169201   Entrez Gene: 105192   Ensembl: ENSG000001850437   OMIM: 6022935   UniProtKB: Q998283   

Export aliases for CIB1 gene to outside databases

Previous GC identifers: GC15P087395 GC15M084280 GC15M088360 GC15M088503 GC15M088574 GC15M066885


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for CIB1:
The protein encoded by this gene is a member of the calcium-binding protein family. The specific function of this
protein has not yet been determined; however this protein is known to interact with DNA-dependent protein kinase and
may play a role in kinase-phosphatase regulation of DNA end joining. This protein also interacts with integrin
alpha(IIb)beta(3), which may implicate this protein as a regulatory molecule for alpha(IIb)beta(3). (provided by
RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: CIB1_HUMAN, Q99828
Function: May convert the inactive conformation of integrin alpha-IIb/beta3 to an active form through binding to the
integrin cytoplasmic domain. Induces cell migration and spreading mediated through integrin (possibly via focal
adhesion complexes). Functions as a negative regulator of stress activated MAP kinase (MAPK) signaling pathways. May
play a role in regulation of apoptosis. Interacts with and up-regulates PTK2/FAK1 activity. Down regulates inositol
1,4,5-trisphosphate receptor-dependent calcium signaling. Participates in endomitotic cell cycle, a form of mitosis in
which both karyokinesis and cytokinesis are interrupted and is a hallmark of megakaryocyte differentiation

Gene Wiki entry for CIB1


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000015.9  NC_018926.1  NT_010274.17  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CIB1 gene promoter:
         RFX1   Sp1   Brachyury   Egr-1   POU3F2 (N-Oct-5b)   POU3F2 (N-Oct-5a)   POU3F2   Egr-4   YY1   c-Myb   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCIB1 promoter sequence
   Search SABiosciences Chromatin IP Primers for CIB1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CIB1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 15q25.3-q26   Ensembl cytogenetic band:  15q26.1   HGNC cytogenetic band: 15q25.3-q26

CIB1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CIB1 gene location

GeneLoc information about chromosome 15         GeneLoc Exon Structure

GeneLoc location for GC15M090773:  view genomic region     (about GC identifiers)

Start:
90,773,207 bp from pter      End:
90,777,279 bp from pter
Size:
4,073 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: CIB1_HUMAN, Q99828 (See protein sequence)
Recommended Name: Calcium and integrin-binding protein 1  
Size: 191 amino acids; 21703 Da
Subunit: Monomer. Interacts with the heterodimeric integrin alpha-IIb/beta3. Interacts with the protein kinases
PLK2/SNK and with the region immediately upstream of the kinase domain of DNA-PK. Interacts with PLK3; leading to
inhibit PLK3 kinase activity. Interacts with PSEN2. Interacts with MYO1C (By similarity). Interacts (via C-terminus)
with F8. Interacts with NBR1 (via C-terminus). Interacts with FEZ1 (via C-terminus). Interacts with UBR5 (via
C-terminus); the interaction is sensitive to DNA damage, and may target CIB1 for ubiquitin-mediated degradation.
Interacts with IFI6. Interacts with BCL2. Interacts with TAS1R2 (via C-terminus); this interaction is independent of
the myristoylation state of CIB1. Interacts with ITPR3; in a calcium dependent manner. Interacts with PTK2/FAK1.
Interacts with MAP3K5; inhibiting MAP3K5 activation by phosphorylation, and its subsequent interaction with TRAF2
Subcellular location: Membrane; Lipid-anchor. Cytoplasm. Nucleus. Cell projection, filopodium. Apical cell membrane.
Note=Localizes to the perinuclear region in the presence of NBR1. Colocalizes with TAS1R2 in apical regions of taste
receptor cells
6/7 PDB 3D structures from and Proteopedia for CIB1 (see all 7):
1DGU (3D)        1DGV (3D)        1XO5 (3D)        1Y1A (3D)        2L4H (3D)        2L4I (3D)    
Secondary accessions: B5BU40 O00693 O00735 Q6IB49 Q96J54 Q99971

Explore the universe of human proteins at neXtProt for CIB1: NX_Q99828

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q99828

  • CIB1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_006375.2  
    ENSEMBL proteins: 
     ENSP00000333873  

    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    OriGene Purified Protein: CIB1
    OriGene Protein Over-expression Lysate: CIB1
    OriGene Custom Protein Services for CIB1 
    GenScript Custom Purified and Recombinant Proteins Services for CIB1
    Novus Biologicals CIB1 Proteins
    Novus Biologicals CIB1 Lysates
    Browse Sino Biological Recombinant Proteins
    ProSpec Recombinant Protein for CIB1
    Uscn Proteins for CIB1

    Gene Ontology (GO): 5/7 cellular component terms (GO ID links to tree view) (see all 7):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005654nucleoplasm IMP10366599
    GO:0005737cytoplasm IMP10366599
    GO:0005783endoplasmic reticulum IMP10366599
    GO:0016020membrane IDA10366599
    GO:0016324apical plasma membrane IEA--


    CIB1 for ontologies           About GeneDecksing



    CIB1 Antibody Products: 
    EMD Millipore Mono- and Polyclonal Antibodies for the study of CIB1
    R&D Systems Antibodies for CIB1
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for CIB1 
    GenScript Superior Antibodies for CIB1
    Novus Biologicals CIB1 Antibodies
    Search for Antibodies for CIB1 at Abcam  
    Uscn Antibodies for CIB1
    ThermoFisher Antibodies for CIB1

    Assay Products for CIB1: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for CIB1
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for CIB1


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    CIB1 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR011992 EF-hand-like_dom
     IPR002048 EF_hand_Ca-bd
     IPR018247 EF_Hand_1_Ca_BS

    Graphical View of Domain Structure for InterPro Entry Q99828

    ProtoNet protein and cluster: Q99828

    UniProtKB/Swiss-Prot: CIB1_HUMAN, Q99828
    Similarity: Contains 2 EF-hand domains


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: CIB1_HUMAN, Q99828
    Function: May convert the inactive conformation of integrin alpha-IIb/beta3 to an active form through binding to the
    integrin cytoplasmic domain. Induces cell migration and spreading mediated through integrin (possibly via focal
    adhesion complexes). Functions as a negative regulator of stress activated MAP kinase (MAPK) signaling pathways. May
    play a role in regulation of apoptosis. Interacts with and up-regulates PTK2/FAK1 activity. Down regulates inositol
    1,4,5-trisphosphate receptor-dependent calcium signaling. Participates in endomitotic cell cycle, a form of mitosis in
    which both karyokinesis and cytokinesis are interrupted and is a hallmark of megakaryocyte differentiation

    miRNA
    Products:
        
    OriGene 3'-UTR Clone: CIB1
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CIB1
    1 QIAGEN miScript miRNA Assays for microRNA that regulate CIB1:
    hsa-miR-4267
    SwitchGear 3'UTR luciferase reporter plasmidCIB1 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CIB1 (see all 7)
    OriGene shRNA RFP: CIB1
    OriGene siRNA: CIB1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CIB1

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for CIB1

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CIB1 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CIB1 (see all 2)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: CIB1 (NM_006384)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CIB1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CIB1 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for CIB1
    Search LifeMap BioReagents cell lines for CIB1

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CIB1

    Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005509calcium ion binding IMP15475008
    GO:0005515protein binding IPI--
    GO:0043495protein anchor IGI--


    CIB1 for ontologies           About GeneDecksing


    Animal Models:
         Mouse knock-out Cib1tm1Prse for CIB1
         3 MGI mutant phenotypes (inferred from 1 allele(MGI details for Cib1):
     cellular  endocrine/exocrine gland  reproductive system 

    CIB1 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Cell adhesion_Integrin inside-out signaling
    Cell adhesion_Integrin inside-out signaling1.00
    Cell adhesion Integrin inside-out signaling0.99

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    1 EMD Millipore Pathway for CIB1
        Cell adhesion Integrin inside-out signaling


    1 GeneGo (Thomson Reuters) Pathway for CIB1
        Cell adhesion Integrin inside-out signaling



    CIB1 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for CIB1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 23)

    5/26 Interacting proteins for CIB1 (Q998282, 3 ENSP000003338734) via UniProtKB, MINT, STRING, and/or I2D (see all 26)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ITGA2P173012, 3, ENSP000002965854MINT-1894979 I2D: score=1 STRING: ENSP00000296585
    WASLO004012, 3, ENSP000002230234MINT-1894563 MINT-1894734 MINT-1894761 MINT-2748633 MINT-1894885 MINT-1894939 MINT-2748609 I2D: score=1 STRING: ENSP00000223023
    PSEN2P498102, 3, ENSP000003557474MINT-15561 MINT-15560 MINT-15562 I2D: score=5 STRING: ENSP00000355747
    PRKDCP785273, ENSP000003134204I2D: score=3 STRING: ENSP00000313420
    PSEN1P497683, ENSP000003263664I2D: score=3 STRING: ENSP00000326366
    About this table

    Gene Ontology (GO): 5/8 biological process terms (GO ID links to tree view) (see all 8):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006302double-strand break repair TAS9372844
    GO:0006915apoptotic process IMP10366599
    GO:0006974response to DNA damage stimulus IDA12011095
    GO:0007113endomitotic cell cycle IDA--
    GO:0007155cell adhesion TAS9030514


    CIB1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    CIB1 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CIB1
    8 Novoseek chemical compound relationships for CIB1 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    calcium 36.7 44 18627437 (6), 14992593 (4), 10822252 (3), 18197701 (3) (see all 15)
    fibrinogen 30.1 7 12714504 (3), 11756406 (2), 11704681 (1)
    threonine 26.4 2 15611134 (1), 16325270 (1)
    leucine 18.6 1 17126281 (1)
    serine 18 2 15611134 (1), 16325270 (1)
    magnesium 12.6 4 14992593 (2), 17516631 (1), 18197701 (1)
    adp 3.82 1 11704681 (1)
    alanine 0 2 12023286 (1)

    Search CenterWatch for drugs/clinical trials and news about CIB1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for CIB1 gene: 
    NM_006384.3  

    Unigene Cluster for CIB1:

    Calcium and integrin binding 1 (calmyrin)
    Hs.715556  [show with all ESTs]
    Unigene Representative Sequence: BM467105
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000328649(uc002bpb.4)

    miRNA
    Products:
         
    OriGene 3'-UTR Clone: CIB1
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CIB1
    1 QIAGEN miScript miRNA Assays for microRNA that regulate CIB1:
    hsa-miR-4267
    SwitchGear 3'UTR luciferase reporter plasmidCIB1 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CIB1 (see all 7)
    OriGene shRNA RFP: CIB1
    OriGene siRNA: CIB1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CIB1
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CIB1 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CIB1 (see all 2)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: CIB1 (NM_006384)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CIB1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CIB1 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CIB1
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat CIB1
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CIB1
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CIB1

    Additional cDNA sequence: 

    AB451276.1 AB451406.1 BC000846.2 CR456955.1 JQ246073.1 U82226.1 U83236.1 U85611.1 

    22 DOTS entries:

    DT.75123307  DT.95274783  DT.95274797  DT.102833468  DT.95363029  DT.97864539  DT.100813547  DT.121026732 
    DT.100813546  DT.91744994  DT.92441628  DT.102832378  DT.121026742  DT.439451  DT.91960323  DT.95274812 
    DT.100813545  DT.100880913  DT.449823  DT.75107081  DT.91772111  DT.95200729 

    24/439 AceView cDNA sequences (see all 439):

    BQ924681 AI200875 BM985016 BG180446 BE872363 BQ689413 CA443331 CR626397 
    BQ940076 BM983981 BG823659 AI470697 AI934804 BG281393 BM708932 BM310299 
    BM752042 AA826393 BQ230705 BU162762 CR604330 BU069776 AJ713219 BQ668916 

    GeneLoc Exon Structure

    5/12 Alternative Splicing Database (ASD) splice patterns (SP) for CIB1 (see all 12)    About this scheme

    ExUns: 1 ^ 2a · 2b ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b · 7c · 7d · 7e ^ 8a · 8b · 8c · 8d · 8e
    SP1:              -     -                 -                                                                                 
    SP2:              -     -     -           -                                                                                 
    SP3:                                                                                                                        
    SP4:              -     -                 -                                                                                 
    SP5:              -     -     -           -                                                                                 


    ECgene alternative splicing isoforms for CIB1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CIB1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GGAGAGGGCG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See CIB1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CIB1

    SOURCE GeneReport for Unigene cluster: Hs.715556

    UniProtKB/Swiss-Prot: CIB1_HUMAN, Q99828
    Tissue specificity: Ubiquitous

        SABiosciences Expression via Pathway-Focused PCR Array including CIB1: 
              DNA Damage Signaling Pathway in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CIB1
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat CIB1
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CIB1
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CIB1
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CIB1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for CIB1 gene from 6/18 species (see all 18)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves CIB11 calcium and integrin binding 1 (calmyrin) 75.31(n)
    74.07(a)
      770162  XM_001233494.2  XP_001233495.2 
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.139092 Xenopus laevis transcribed sequence with weak similarity more 75.97(n)    BJ624062.1 
    zebrafish
    (Danio rerio)
    Actinopterygii wufc44f062 Transcribed sequence with moderate similarity to protein more 72.13(n)    BM141096.1 
    mosquito
    (Anopheles gambiae)
    Insecta AgaP_AGAP0084741 AGAP008474-PA 52.61(n)
    47.57(a)
      1277504  XM_316971.3  XP_316971.2 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT3G184306
    EF-hand, calcium binding motif-containing protein
    27(a)
    1 → many
    3(6325915-6327692)
    rice
    (Oryza sativa)
    Liliopsida --
    EF hand family protein, putative, expressed
    28(a)
    1 → many
    2(34200999-34203985)


    ENSEMBL Gene Tree for CIB1 (if available)
    TreeFam Gene Tree for CIB1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for CIB1 gene
    CIB32  PPP3R22  CIB42  PPP3R12  WDR922  CHP22  TESC2  CIB22  
    CHP12  
    4 SIMAP similar genes for CIB1 using alignment to 1 protein entry:     CIB1_HUMAN:
    CIB2    CIB3    CIB4    PPP3R1

    CIB1 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/137 NCBI SNPs in CIB1 are shown (see all 137    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 15 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1873819371,2
    --90773565(+) CAACGA/CGGGCC 1 -- ut310--------
    rs1906694991,2
    --90773653(+) ACCTTA/GGCCAC 1 -- ut310--------
    rs1506327961,2
    C,--90773702(+) ACACAC/TGCTGG 1 -- ut310--------
    rs20737061,2
    C,F,A,H,--90773782(-) TCCCTA/GCCCTC 1 -- int117Minor allele frequency- G:0.36EA NS NA WA CSA 1514
    rs740370641,2
    C,F,--90773801(+) GAACTT/CGCCCC 1 -- int14Minor allele frequency- C:0.25WA CSA 124
    rs786402151,2
    C,F,--90773895(+) GGAGCT/CTTCTG 1 -- int11Minor allele frequency- C:0.17WA 118
    rs20737051,2
    C,F,H,--90774039(-) GGGCCG/AGCTAA 1 -- int110Minor allele frequency- A:0.36NA CSA WA EA 375
    rs1829260891,2
    --90774058(+) GGGACG/TGGGGC 1 -- int10--------
    rs1398138371,2
    C,--90774193(+) AGATGA/GCGTGC 2 A V mis10--------
    rs10448131,2
    C,F,O,H,--90774259(-) CCTTTC/GCCAGA 1 -- int1 trp318Minor allele frequency- G:0.43EA MN NA NS CSA WA EU 3904

    HapMap Linkage Disequilibrium report for CIB1 (90773207 - 90777279 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 7 variations for CIB1
         7 CNVs: 77066 8803 3976 3094 77067 9752 37691

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CIB1
    DNA2.0 Custom Variant and Variant Library Synthesis for CIB1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    CIB1 for disorders           About GeneDecksing

    OMIM gene information: 602293    OMIM disorders: --

    20/23 diseases for CIB1 (see all 23):    About MalaCards
    wiskott-aldrich syndrome    papillary thyroid carcinoma    dilated cardiomyopathy    kaposi's sarcoma
    thyroid carcinoma    alzheimer's disease    down syndrome    hepatitis c
    gastric cancer    cardiomyopathy    breast cancer    lung adenocarcinoma
    thyroiditis    sarcoma    hepatocellular carcinoma    retinoblastoma
    pancreatic cancer    adenocarcinoma    carcinoma    pancreatitis

    6 Novoseek disease relationships for CIB1 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    alzheimers disease 14.6 2 15685448 (1)
    gastric cancer 12.7 2 16118517 (2)
    breast cancer 0 1 15059906 (1)
    metastasis 0 1 17162129 (1)
    tumors 0 4 16118517 (2), 11894123 (1), 12872447 (1)
    cancer 0 1 20392941 (1)

    Human Genome Epidemiology (HuGE) Navigator: CIB1 (3 documents)

    Export disorders for CIB1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CIB1 gene, integrated from 9 sources (see all 106):
    (articles sorted by number of sources associating them with CIB1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Genomic structure of mouse and human genes for DNA-PKcs interacting protein (KIP). (PubMed id 10826701)1, 2, 3, 9 Hattori A.... Saito T. (2000)
    2. Identification of a novel calcium-binding protein that interacts with the integrin alphaIIb cytoplasmic domain. (PubMed id 9030514)1, 2, 3 Naik U.P.... Parise L.V. (1997)
    3. Molecular basis of CIB binding to the integrin alpha IIb cytoplasmic domain. (PubMed id 12023286)1, 2, 9 Barry W.T.... Parise L.V. (2002)
    4. Auxiliary Ca2+ binding sites can influence the structure of CIB1. (PubMed id 19388079)1, 2, 9 Yamniuk A.P.... Vogel H.J. (2009)
    5. Sweet taste receptor interacting protein CIB1 is a general inhibitor of InsP3-dependent Ca2+ release in vivo. (PubMed id 18627437)1, 2, 9 Hennigs J.K.... Schmale H. (2008)
    6. Association of CIB with GPIIb/IIIa during outside-in signaling is required for platelet spreading on fibrinogen. (PubMed id 12714504)1, 2, 9 Naik U.P. and Naik M.U. (2003)
    7. Calcium-binding calmyrin forms stable covalent dimers in vitro, but in vivo is found in monomeric form. (PubMed id 15933764)1, 2, 9 Sobczak A....Wojda U. (2005)
    8. Structures of the platelet calcium- and integrin-binding protein and the alphaIIb-integrin cytoplasmic domain suggest a mechanism for calcium-regulated recognition; homology modelling and NMR studies. (PubMed id 10822252)1, 2, 9 Hwang P.M. and Vogel H.J. (2000)
    9. G1P3, an interferon inducible gene 6-16, is expressed in gastric cancers and inhibits mitochondrial-mediated apoptosis in gastric cancer cell line TMK-1 cell. (PubMed id 15685448)1, 2, 9 Tahara E. Jr.... Tahara E. (2005)
    10. Interaction between DNA-dependent protein kinase and a novel protein, KIP. (PubMed id 9372844)1, 2, 9 Wu X. and Lieber M.R. (1997)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 10519 HGNC: 16920 AceView: CIB1 Ensembl:ENSG00000185043 euGenes: HUgn10519
    ECgene: CIB1 H-InvDB: CIB1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CIB1 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for CIB1 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for CIB1 gene:
    Search GeneIP for patents involving CIB1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     Browse for Gene Knock-down Tools from EMD Millipore
     Browse Purified and Recombinant Proteins at EMD Millipore
     Browse Small Molecules at EMD Millipore
     EMD Millipore Mono- and Polyclonal Antibodies for the study of CIB1
     Browse Kits and Assays available from EMD Millipore
     Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Antibodies for CIB1 (CIB1)   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   OriGene shRNA RFP for CIB1  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CIB1   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CIB1  
     OriGene Protein Over-expression Lysate for CIB1   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for CIB1   OriGene 3'-UTR Clone for CIB1  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CIB1   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CIB1  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     OriGene Purified Protein for CIB1   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for CIB1   OriGene Custom Protein Services for CIB1  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CIB1
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CIB1
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CIB1
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CIB1
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CIB1
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CIB1
     GenScript Custom Purified and Recombinant Proteins Services for CIB1 GenScript cDNA clones with any tag delivered in your preferred vector for CIB1
     GenScript Custom Assay Services for CIB1 GenScript Superior Antibodies for CIB1
     GenScript Custom overexpressing Cell Line Services for CIB1 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in CIB1 promoter
     Search Chromatin IP Primers for CIB1
     RT2 qPCR Primer Assay in human, mouse, rat CIB1
     GNC Network for CIB1
     SABiosciences PCR Arrays including human, mouse, rat CIB1
     Search Tocris compounds for CIB1
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     CIB1 antibodies
     CIB1 proteins
     CIB1 lysates
     Search for Antibodies for CIB1 at Abcam
     See all of Abcam's Antibodies, Kits and Proteins for CIB1
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Recombinant Protein for CIB1




     CIB1 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for CIB1
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CIB1
     SwitchGear 3'UTR luciferase reporter plasmids for CIB1
     SwitchGear Promoter luciferase reporter plasmids for CIB1
     ThermoFisher Antibodies for CIB1
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CIB1
           
    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      CIB1 gene at Home site.
    hostname: 356980-web2.xennexinc.com index build: 100 solr: 1.4