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Aliases for CHRNE Gene

Aliases for CHRNE Gene

  • Cholinergic Receptor, Nicotinic, Epsilon (Muscle) 2 3
  • CMS1D 3 6
  • CMS1E 3 6
  • CMS2A 3 6
  • FCCMS 3 6
  • SCCMS 3 6
  • ACHRE 3 4
  • Cholinergic Receptor, Nicotinic, Epsilon Polypeptide 3
  • Acetylcholine Receptor, Nicotinic, Epsilon (Muscle) 3
  • Cholinergic Receptor, Nicotinic, Epsilon 2
  • Acetylcholine Receptor Subunit Epsilon 3
  • Acetylcholine Receptor 2
  • AchR Epsilon Subunit 3
  • Epsilon (Muscle) 2
  • Nicotinic 2

External Ids for CHRNE Gene

Previous GeneCards Identifiers for CHRNE Gene

  • GC17M005220
  • GC17M004745
  • GC17M005001
  • GC17M004741
  • GC17M004689
  • GC17M004801

Summaries for CHRNE Gene

Entrez Gene Summary for CHRNE Gene

  • Acetylcholine receptors at mature mammalian neuromuscular junctions are pentameric protein complexes composed of four subunits in the ratio of two alpha subunits to one beta, one epsilon, and one delta subunit. The acetylcholine receptor changes subunit composition shortly after birth when the epsilon subunit replaces the gamma subunit seen in embryonic receptors. Mutations in the epsilon subunit are associated with congenital myasthenic syndrome. [provided by RefSeq, Sep 2009]

GeneCards Summary for CHRNE Gene

CHRNE (Cholinergic Receptor, Nicotinic, Epsilon (Muscle)) is a Protein Coding gene. Diseases associated with CHRNE include myasthenic syndrome, congenital, associated with acetylcholine receptor deficiency and chrne-related congenital myasthenic syndrome. Among its related pathways are CREB Pathway and Nanog in Mammalian ESC Pluripotency. GO annotations related to this gene include acetylcholine-activated cation-selective channel activity and acetylcholine receptor activity. An important paralog of this gene is CHRNA3.

UniProtKB/Swiss-Prot for CHRNE Gene

  • After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane

Gene Wiki entry for CHRNE Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHRNE Gene

Genomics for CHRNE Gene

Regulatory Elements for CHRNE Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CHRNE Gene

Start:
4,897,769 bp from pter
End:
4,903,074 bp from pter
Size:
5,306 bases
Orientation:
Minus strand

Genomic View for CHRNE Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CHRNE Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHRNE Gene

Proteins for CHRNE Gene

  • Protein details for CHRNE Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q04844-ACHE_HUMAN
    Recommended name:
    Acetylcholine receptor subunit epsilon
    Protein Accession:
    Q04844
    Secondary Accessions:
    • D3DTK6

    Protein attributes for CHRNE Gene

    Size:
    493 amino acids
    Molecular mass:
    54697 Da
    Quaternary structure:
    • Pentamer of two alpha chains, and one each of the beta, delta, and gamma (in immature muscle) or epsilon (in mature muscle) chains

    Three dimensional structures from OCA and Proteopedia for CHRNE Gene

neXtProt entry for CHRNE Gene

Proteomics data for CHRNE Gene at MOPED

Post-translational modifications for CHRNE Gene

  • Glycosylation at Asn86 and Asn161
  • Modification sites at PhosphoSitePlus

Other Protein References for CHRNE Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for CHRNE Gene

Domains for CHRNE Gene

Gene Families for CHRNE Gene

HGNC:
  • CHR :Cholinergic receptors
  • CHRN :Ligand-gated ion channels / Acetylcholine receptors, nicotinic
IUPHAR :

Suggested Antigen Peptide Sequences for CHRNE Gene

Graphical View of Domain Structure for InterPro Entry

Q04844

UniProtKB/Swiss-Prot:

ACHE_HUMAN :
  • Q04844
Family:
  • Belongs to the ligand-gated ion channel (TC 1.A.9) family. Acetylcholine receptor (TC 1.A.9.1) subfamily. Epsilon/CHRNE sub-subfamily.
genes like me logo Genes that share domains with CHRNE: view

Function for CHRNE Gene

Molecular function for CHRNE Gene

GENATLAS Biochemistry: cholinergic receptor,nicotinic,epsilon polypeptide,muscle
UniProtKB/Swiss-Prot Function: After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane

Gene Ontology (GO) - Molecular Function for CHRNE Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004889 acetylcholine-activated cation-selective channel activity IEA --
GO:0005230 extracellular ligand-gated ion channel activity --
GO:0008324 cation transmembrane transporter activity TAS 8872460
GO:0015464 acetylcholine receptor activity TAS 8872460
genes like me logo Genes that share ontologies with CHRNE: view
genes like me logo Genes that share phenotypes with CHRNE: view

Animal Models for CHRNE Gene

MGI Knock Outs for CHRNE:

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , miRNA , Transcription Factor Targeting and HOMER Transcription for CHRNE Gene

Localization for CHRNE Gene

Subcellular locations from UniProtKB/Swiss-Prot for CHRNE Gene

Cell junction, synapse, postsynaptic cell membrane; Multi-pass membrane protein. Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CHRNE Gene COMPARTMENTS Subcellular localization image for CHRNE gene
Compartment Confidence
plasma membrane 5
extracellular 1

Gene Ontology (GO) - Cellular Components for CHRNE Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0005887 integral component of plasma membrane TAS 8872460
GO:0005892 acetylcholine-gated channel complex TAS 7531341
GO:0016020 membrane --
GO:0030054 cell junction IEA --
genes like me logo Genes that share ontologies with CHRNE: view

Pathways for CHRNE Gene

genes like me logo Genes that share pathways with CHRNE: view

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Gene Ontology (GO) - Biological Process for CHRNE Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport TAS 8872460
GO:0006811 ion transport --
GO:0006812 cation transport --
GO:0006936 muscle contraction TAS 8872460
GO:0007165 signal transduction TAS 8872460
genes like me logo Genes that share ontologies with CHRNE: view

Compounds for CHRNE Gene

(1) Drugbank Compounds for CHRNE Gene

Compound Synonyms Cas Number Type Actions PubMed IDs
Galantamine
  • (-)-Galanthamine
357-70-0 target allosteric modulator
genes like me logo Genes that share compounds with CHRNE: view

Transcripts for CHRNE Gene

mRNA/cDNA for CHRNE Gene

(17) Selected AceView cDNA sequences:
(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CHRNE Gene

Cholinergic receptor, nicotinic, epsilon (muscle):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CHRNE

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for CHRNE

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CHRNE Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9
SP1: -
SP2:
SP3:

Relevant External Links for CHRNE Gene

GeneLoc Exon Structure for
CHRNE
ECgene alternative splicing isoforms for
CHRNE

Expression for CHRNE Gene

mRNA expression in normal human tissues for CHRNE Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CHRNE Gene

This gene is overexpressed in Heart - Atrial Appendage (23.5) and Pituitary (11.8).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for CHRNE Gene

SOURCE GeneReport for Unigene cluster for CHRNE Gene Hs.654535

genes like me logo Genes that share expressions with CHRNE: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for CHRNE Gene

Orthologs for CHRNE Gene

This gene was present in the common ancestor of animals.

Orthologs for CHRNE Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CHRNE 35
  • 99.35 (n)
  • 99.16 (a)
CHRNE 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CHRNE 35
  • 88.98 (n)
  • 90.47 (a)
CHRNE 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CHRNE 35
  • 87.15 (n)
  • 88.35 (a)
CHRNE 36
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Chrne 35
  • 83.23 (n)
  • 89.64 (a)
Chrne 16
Chrne 36
  • 89 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CHRNE 36
  • 72 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Chrne 35
  • 82.95 (n)
  • 89.01 (a)
lizard
(Anolis carolinensis)
Reptilia CHRNE 36
  • 54 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia LOC386670 35
tropical clawed frog
(Silurana tropicalis)
Amphibia chrne 35
  • 61.88 (n)
  • 56.65 (a)
zebrafish
(Danio rerio)
Actinopterygii chrne 36
  • 53 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta nAcRbeta-64B 36
  • 31 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea acr-2 36
  • 25 (a)
ManyToMany
acr-3 36
  • 26 (a)
ManyToMany
lev-1 36
  • 29 (a)
ManyToMany
unc-29 36
  • 26 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 36 (a)
OneToMany
Species with no ortholog for CHRNE:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CHRNE Gene

ENSEMBL:
Gene Tree for CHRNE (if available)
TreeFam:
Gene Tree for CHRNE (if available)

Paralogs for CHRNE Gene

Selected SIMAP similar genes for CHRNE Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with CHRNE: view

Variants for CHRNE Gene

Sequence variations from dbSNP and Humsavar for CHRNE Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs2661696 -- 4,903,976(+) CCTCA(A/G)CCTCT upstream-variant-2KB
rs2661697 -- 4,904,700(+) TCTCG(C/T)ACACC upstream-variant-2KB
rs3760490 -- 4,904,631(+) AGGTC(A/G)GGATC upstream-variant-2KB
rs3966782 -- 4,903,803(+) acacg(C/T)gcaca upstream-variant-2KB
rs6502828 -- 4,903,869(+) AAAAA(A/T)ttttt upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CHRNE Gene

Variant ID Type Subtype PubMed ID
nsv833347 CNV Loss 17160897
nsv833349 CNV Loss 17160897
nsv509647 CNV Insertion 20534489
nsv907619 CNV Loss 21882294
nsv907620 CNV Loss 21882294
nsv833350 CNV Loss 17160897

Relevant External Links for CHRNE Gene

HapMap Linkage Disequilibrium report
CHRNE
Human Gene Mutation Database (HGMD)
CHRNE

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CHRNE Gene

Disorders for CHRNE Gene

(3) OMIM Diseases for CHRNE Gene (100725)

UniProtKB/Swiss-Prot

ACHE_HUMAN
  • Note=The muscle AChR is the major target antigen in the autoimmune disease myasthenia gravis. Myasthenia gravis is characterized by sporadic muscular fatigability and weakness, occurring chiefly in muscles innervated by cranial nerves, and characteristically improved by cholinesterase-inhibiting drugs.
  • Myasthenic syndrome, congenital, slow-channel (SCCMS) [MIM:601462]: A common congenital myasthenic syndrome. Congenital myasthenic syndromes are characterized by muscle weakness affecting the axial and limb muscles (with hypotonia in early-onset forms), the ocular muscles (leading to ptosis and ophthalmoplegia), and the facial and bulbar musculature (affecting sucking and swallowing, and leading to dysphonia). The symptoms fluctuate and worsen with physical effort. Congenital myasthenic syndrome slow-channel type is caused by kinetic abnormalities of the AChR, resulting in prolonged endplate currents and prolonged AChR channel opening episodes. {ECO:0000269 PubMed:12141316, ECO:0000269 PubMed:7531341, ECO:0000269 PubMed:7538206, ECO:0000269 PubMed:8872460}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Myasthenic syndrome, congenital, fast-channel (FCCMS) [MIM:608930]: A congenital myasthenic syndrome characterized by kinetic abnormalities of the AChR. Due in most cases to mutations that decrease activity of the AChR by slowing the rate of opening of the receptor channel, speeding the rate of closure of the channel, or decreasing the number of openings of the channel during ACh occupancy. The result is failure to achieve threshold depolarization of the endplate and consequent failure to fire an action potential. {ECO:0000269 PubMed:10962020, ECO:0000269 PubMed:22592360, ECO:0000269 PubMed:8755487}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Myasthenic syndrome, congenital, associated with acetylcholine receptor deficiency (CMS-ACHRD) [MIM:608931]: A post-synaptic congenital myasthenic syndrome. Congenital myasthenic syndromes (CMS) are inherited disorders of neuromuscular transmission that stem from mutations in presynaptic, synaptic, or postsynaptic proteins. {ECO:0000269 PubMed:9158150}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(2) University of Copenhagen DISEASES for CHRNE Gene

(1) Novoseek inferred disease relationships for CHRNE Gene

Disease -log(P) Hits PubMed IDs
myasthenic syndromes congenital 90 1

Relevant External Links for CHRNE

GeneTests
CHRNE
GeneReviews
CHRNE
Genetic Association Database (GAD)
CHRNE
Human Genome Epidemiology (HuGE) Navigator
CHRNE
genes like me logo Genes that share disorders with CHRNE: view

Publications for CHRNE Gene

  1. Primary structure of the human muscle acetylcholine receptor. cDNA cloning of the gamma and epsilon subunits. (PMID: 7688301) Beeson D.M.W. … Newsom-Davis J. (Eur. J. Biochem. 1993) 2 3 4
  2. The CHRNE 1293insG founder mutation is a frequent cause of congenital myasthenia in North Africa. (PMID: 19064877) Richard P. … HantaA^ D. (Neurology 2008) 3 23
  3. Congenital myasthenic syndrome caused by prolonged acetylcholine receptor channel openings due to a mutation in the M2 domain of the epsilon subunit. (PMID: 7531341) Ohno K. … Engel A.G. (Proc. Natl. Acad. Sci. U.S.A. 1995) 3 4
  4. A leucine-to-phenylalanine substitution in the acetylcholine receptor ion channel in a family with the slow-channel syndrome. (PMID: 7538206) Gomez C.M. … Gammack J.T. (Neurology 1995) 3 4
  5. Immature end-plates and utrophin deficiency in congenital myasthenic syndrome caused by epsilon-AChR subunit truncating mutations. (PMID: 11030414) Sieb J.P. … Steinlein O.K. (Hum. Genet. 2000) 3 23

Products for CHRNE Gene

Sources for CHRNE Gene

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