Aliases for CHRNB4 Gene
Aliases for CHRNB4 Gene
External Ids for CHRNB4 Gene
- HGNC: 1964
- Entrez Gene: 1143
- Ensembl: ENSG00000117971
- OMIM: 118509
- UniProtKB: P30926
Previous GeneCards Identifiers for CHRNB4 Gene
- GC15P074970
- GC15M072006
- GC15M076492
- GC15M076632
- GC15M076703
- GC15M078916
- GC15M055674
Summaries for CHRNB4 Gene
GeneCards Summary for CHRNB4 Gene
CHRNB4 (Cholinergic Receptor Nicotinic Beta 4 Subunit) is a Protein Coding gene. Diseases associated with CHRNB4 include Substance Dependence and Nicotine Dependence, Protection Against. Among its related pathways are Innate Immune System and Sudden Infant Death Syndrome (SIDS) Susceptibility Pathways. GO annotations related to this gene include extracellular ligand-gated ion channel activity and ligand-gated ion channel activity. An important paralog of this gene is CHRNB2.
UniProtKB/Swiss-Prot for CHRNB4 Gene
-
After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.
No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHRNB4 Gene
Genomics for CHRNB4 Gene
Regulatory Elements for CHRNB4 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH15G078685 | 0.8 | ENCODE | 12.9 | +42.0 | 42032 | 1.4 | BCOR HDGF ZMYM3 BMI1 YBX1 ARID3A POLR2A EED ZNF143 RELB | LOC646934 CHRNB4 PIR47221 GC15M078668 |
| GH15G078681 | 0.6 | ENCODE | 12.8 | +45.9 | 45941 | 0.2 | POLR2A SMARCA4 GLIS1 REST ZNF398 ZIC2 WT1 RAD21 ZBTB20 | CHRNB4 GC15M078668 PIR47221 |
| GH15G078671 | 0.7 | ENCODE | 6.6 | +55.9 | 55893 | 1.2 | HLF MAFG REST ZIC2 RAD21 OSR2 ZNF316 POLR2A SMARCA4 SCRT2 | CHRNA5 CRABP1 CHRNB4 GC15M078668 RPL18P11 |
| GH15G078661 | 0.3 | FANTOM5 | 5.8 | +66.5 | 66520 | 0.4 | CHRNA3 CHRNB4 MORF4L1 LOC646934 PIR32831 | |
| GH15G078726 | 0.7 | ENCODE | 0.7 | +0.7 | 721 | 0.2 | LEF1 PKNOX1 BMI1 ZFHX2 POLR2A SCRT2 ZNF600 TCF7L2 SCRT1 RFX1 | MORF4L1 ADAMTS7 CHRNB4 GC15M078021 |
Regulatory Element Products
Genomic Location for CHRNB4 Gene
- Chromosome:
- 15
- Start:
- 78,623,297 bp from pter
- End:
- 78,727,754 bp from pter
- Size:
- 104,458 bases
- Orientation:
- Minus strand
Genomic View for CHRNB4 Gene
- Cytogenetic band:
-
- 15q25.1 by Ensembl
- 15q25.1 by Entrez Gene
- 15q25.1 by HGNC
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CHRNB4 Gene
Proteins for CHRNB4 Gene
-
Protein details for CHRNB4 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P30926-ACHB4_HUMAN
- Recommended name:
- Neuronal acetylcholine receptor subunit beta-4
- Protein Accession:
- P30926
- A4FTX5
- E9PHE8
- Q16607
- Q4VBA5
- Q8WXC8
- Q9BQR4
Protein attributes for CHRNB4 Gene
- Size:
- 498 amino acids
- Molecular mass:
- 56380 Da
- Quaternary structure:
-
- Neuronal AChR is composed of two different types of subunits: alpha and beta. Beta-4 subunit can be combined to alpha-2, alpha-3 or alpha-4 to give rise to functional receptors. Interacts with RIC3; which is required for proper folding and assembly (PubMed:16120769). Interacts with LYPD6 (PubMed:27344019). The pentamer alpha3-beta-4 interacts with the conotoxin BuIA (By similarity).
Protein Expression for CHRNB4 Gene
Post-translational modifications for CHRNB4 Gene
Other Protein References for CHRNB4 Gene
Antibody Products
-
Custom Antibody ServicesOriGene Antibodies for CHRNB4
- Novus Biologicals Antibodies for CHRNB4
- Invitrogen Antibodies for CHRNB4
- antibodies-online Antibodies for CHRNB4: See all 45
- GeneTex CHRNB4 antibody for CHRNB4
-
Santa Cruz Biotechnology (SCBT) Antibodies for CHRNB4
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CHRNB4
- Origene Custom Protein Services for CHRNB4
- Search GeneTex for Proteins for CHRNB4
Assay Products
No data available for DME Specific Peptides for CHRNB4 Gene
Domains & Families for CHRNB4 Gene
Gene Families for CHRNB4 Gene
- HGNC:
- IUPHAR :
Protein Domains for CHRNB4 Gene
Suggested Antigen Peptide Sequences for CHRNB4 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
P30926UniProtKB/Swiss-Prot:
ACHB4_HUMAN :- Belongs to the ligand-gated ion channel (TC 1.A.9) family. Acetylcholine receptor (TC 1.A.9.1) subfamily. Beta-4/CHRNB4 sub-subfamily.
- Family:
-
- Belongs to the ligand-gated ion channel (TC 1.A.9) family. Acetylcholine receptor (TC 1.A.9.1) subfamily. Beta-4/CHRNB4 sub-subfamily.
Function for CHRNB4 Gene
Molecular function for CHRNB4 Gene
- GENATLAS Biochemistry:
- cholinergic receptor,nicotinic,beta 4 polypeptide,neuronal
- UniProtKB/Swiss-Prot Function:
- After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005216 | ion channel activity | IEA | -- |
| GO:0005230 | extracellular ligand-gated ion channel activity | IEA | -- |
| GO:0005515 | protein binding | IPI | 27344019 |
| GO:0008144 | drug binding | IEA | -- |
| GO:0015276 | ligand-gated ion channel activity | TAS | 20438829 |
Phenotypes for CHRNB4 Gene
- MGI mutant phenotypes for CHRNB4:
-
inferred from 1 alleles
- mortality/aging
- behavior/neurological phenotype
- growth/size/body region phenotype
- immune system phenotype
- muscle phenotype
- nervous system phenotype
- homeostasis/metabolism phenotype
- digestive/alimentary phenotype
- vision/eye phenotype
- hearing/vestibular/ear phenotype
- integument phenotype
- renal/urinary system phenotype
- craniofacial phenotype
- GenomeRNAi human phenotypes for CHRNB4:
Animal Models for CHRNB4 Gene
- MGI Knock Outs for CHRNB4:
-
- Chrnb4 tm1Mdb
Animal Model Products
-
Taconic Biosciences Mouse Models for CHRNB4
- Cyagen custom Knockout/knockin (KOKI) mouse models for CHRNB4
-
-
ViGene Biosciences lentiviral particle packaged cDNA for CHRNB4 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for CHRNB4 gene
- Search ViGene Biosciences for CHRNB4
CRISPR Products
-
OriGene CRISPR knockouts for CHRNB4
-
Santa Cruz Biotechnology (SCBT) CRISPR for CHRNB4
- GenScript: Design CRISPR guide RNA sequences for CHRNB4
miRNA for CHRNB4 Gene
- miRTarBase miRNAs that target CHRNB4
miRNA Products
- Search ViGene Biosciences for CHRNB4
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for CHRNB4
- Browse OriGene Inhibitory RNA Products For CHRNB4
-
ViGene Biosciences ready-to-package AAV shRNAs for CHRNB4 gene
Clone Products
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for CHRNB4
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CHRNB4
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
-
Horizon Cell Lines for CHRNB4
-
ViGene Biosciences adenoviral particle packaged cDNA for CHRNB4 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for CHRNB4 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for CHRNB4 gene
Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CHRNB4 Gene
Localization for CHRNB4 Gene
Subcellular locations from UniProtKB/Swiss-Prot for CHRNB4 Gene
- Cell junction, synapse, postsynaptic cell membrane; Multi-pass membrane protein. Cell membrane; Multi-pass membrane protein.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005886 | plasma membrane | TAS | -- |
| GO:0005887 | integral component of plasma membrane | IC | 11742001 |
| GO:0005892 | acetylcholine-gated channel complex | TAS | 11742001 |
| GO:0016020 | membrane | IEA | -- |
| GO:0016021 | integral component of membrane | NAS | 8906617 |
Pathways & Interactions for CHRNB4 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Activation of Nicotinic Acetylcholine Receptors | ||
| 2 | Innate Immune System |
.61
|
|
| 3 | Transmission across Chemical Synapses |
.62
|
|
| 4 | Nicotine Pathway (Chromaffin Cell), Pharmacodynamics | ||
| 5 | Circadian entrainment | ||
Pathways by source for CHRNB4 Gene
2 BioSystems pathways for CHRNB4 Gene
13 Reactome pathways for CHRNB4 Gene
1 PharmGKB pathway for CHRNB4 Gene
2 KEGG pathways for CHRNB4 Gene
1 Qiagen pathway for CHRNB4 Gene
Interacting Proteins for CHRNB4 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0001508 | action potential | IEA | -- |
| GO:0006810 | transport | IEA | -- |
| GO:0006811 | ion transport | TAS | 8906617 |
| GO:0006939 | smooth muscle contraction | IEA | -- |
| GO:0006940 | regulation of smooth muscle contraction | IEA | -- |
No data available for SIGNOR curated interactions for CHRNB4 Gene
Drugs & Compounds for CHRNB4 Gene
| Name | Status | Disease Links | Group | Role | Mechanism of Action | Clinical Trials |
|---|---|---|---|---|---|---|
| Nicotine | Approved | Pharma | Antagonist, Target, agonist | 1103 | ||
| Ethanol | Approved | Pharma | Target | 2137 | ||
| Dextromethorphan | Approved | Pharma | Target, antagonist | 133 | ||
| Galantamine | Approved | Pharma | Target, allosteric modulator | 106 | ||
| Levomethadyl Acetate | Approved | Pharma | Target, other/unknown | 0 |
(82) ApexBio Compounds for CHRNB4 Gene
| Compound | Action | Cas Number |
|---|---|---|
| (-)-Lobeline hydrochloride | 134-63-4 | |
| (+)-Anabasine hydrochloride | 53912-89-3 | |
| (+)-Tubocurarine chloride | 57-94-3 | |
| (±)-Anatoxin A fumarate | 1219922-30-1 | |
| (±)-Epibatidine | dopamine receptor antagonist | 148152-66-3 |
| 1-Acetyl-4-methylpiperazine hydrochloride | 144205-68-5 | |
| 3-Bromocytisine | 207390-14-5 | |
| 4-Acetyl-1,1-dimethylpiperazinium iodide | 75667-84-4 | |
| 5-Iodo-A-85380, 5-trimethylstannyl N-BOC derivative | 213766-21-3 | |
| Acetylcholine Chloride | Major transmitter at many nervous sites | 60-31-1 |
| Acetylcysteine | Antioxidant;mucolytic agent | 616-91-1 |
| Atropine | MAChRs antagonist | 5908-99-6 |
| Benzoquinonium dibromide | inhibitor of AChR and ganglion | 311-09-1 |
| Bethanechol chloride | Muscarinic receptor agonist | 590-63-6 |
| bPiDDB | 525596-66-1 | |
| Carbamoylcholine chloride | 51-83-2 | |
| Catestatin | 142211-96-9 | |
| CCMI | 917837-54-8 | |
| Chlorisondamine diiodide | 96750-66-2 | |
| Decamethonium Bromide | 541-22-0 | |
| Desformylflustrabromine hydrochloride | 951322-11-5 | |
| Dihydro-β-erythroidine hydrobromide | antagonist of nAChRs | 29734-68-7 |
| Diphemanil Methylsulfate | 62-97-5 | |
| DMAB-anabaseine dihydrochloride | 154149-38-9 | |
| EVP-6124 | NAChRs agonist | 550999-75-2 |
| Flavoxate hydrochloride | 3717-88-2 | |
| Galanthamine HBr | Acetylcholinesterase inhibitor | 1953-04-4 |
| Gallamine Triethiodide | 65-29-2 | |
| GTS 21 dihydrochloride | nAChRs agonist, novel | 156223-05-1 |
| Hexamethonium Bromide | 55-97-0 | |
| Homatropine Bromide | Muscarinic AChR antagonist | 51-56-9 |
| Homatropine Methylbromide | Muscarinic AChR antagonist | 80-49-9 |
| Hyoscyamine | 101-31-5 | |
| Ipratropium Bromide | 22254-24-6 | |
| Ivermectin B1a-d2 | ||
| LX-1031 | TPH inhibitor | 945976-76-1 |
| LY 2087101 | 913186-74-0 | |
| LY2119620 | 886047-22-9 | |
| Mecamylamine hydrochloride | 826-39-1 | |
| Methscopolamine | Muscarinic acetylcholine receptor blocker | 155-41-9 |
| Methyllycaconitine citrate | 112825-05-5 | |
| MG 624 | 77257-42-2 | |
| Neostigmine Bromide | Cholinesterase inhibitor | 114-80-7 |
| Nitenpyram | 150824-47-8 | |
| NS 1738 | 501684-93-1 | |
| Orphenadrine Citrate | Antiparkinsonian and analgesic drug | 4682-36-4 |
| Otilonium Bromide | 26095-59-0 | |
| Oxybutynin | 5633-20-5 | |
| Oxybutynin chloride | 1508-65-2 | |
| Pancuronium dibromide | AChR antagonist | 15500-66-0 |
| Paroxetine HCl | Antidepressant agents | 78246-49-8 |
| PHA 543613 hydrochloride | 478149-53-0 | |
| PHA 568487 | 527680-57-5 | |
| PNU 282987 | 123464-89-1 | |
| PNU-120596 | α7 nAChR modulator,positive allosteric | 501925-31-1 |
| Pregnenolone | 145-13-1 | |
| Rivastigmine Tartrate | 129101-54-8 | |
| RJR 2429 dihydrochloride | 1021418-53-0 | |
| RJR-2403 | Nicotinic receptor agonist,highly selective | 15585-43-0 |
| RJR-2403 hemioxalate | Neuronal nicotinic receptor agonist | |
| RJR-2403 oxalate | Nicotinic receptor agonist | 220662-95-3 |
| Rocuronium Bromide | TGF-βR I kinase inhibitor | 119302-91-9 |
| RuBi-Nicotine | 1256362-30-7 | |
| S 24795 | 304679-75-2 | |
| Sazetidine A dihydrochloride | 1197329-42-2 | |
| SEN 12333 | 874450-44-9 | |
| SIB 1508Y maleate | 192231-16-6 | |
| SIB 1553A hydrochloride | 191611-89-9 | |
| SR 16584 | 1150153-86-8 | |
| Succinylcholine Chloride Dihydrate | 6101-15-1 | |
| TC 1698 dihydrochloride | 787587-06-8 | |
| TC 2559 difumarate | 212332-35-9 | |
| Tiotropium Bromide hydrate | Muscarinic antagonist | 139404-48-1 |
| TMPH hydrochloride | 849461-91-2 | |
| TQS | 353483-92-8 | |
| Tropicamide | Antimuscarinic drug | 1508-75-4 |
| UB 165 fumarate | 200432-86-6 | |
| Varenicline Tartrate | Subtype-selective agonist of α4β2 nicotinic receptors,orally active | 375815-87-5 |
| α-Bungarotoxin | 11032-79-4 | |
| α-Conotoxin AuIB | 216299-21-7 | |
| α-Conotoxin EI | 170663-33-9 | |
| α-Conotoxin PnIA | 705300-84-1 |
Drug Products
- ApexBio compounds for CHRNB4
Transcripts for CHRNB4 Gene
mRNA/cDNA for CHRNB4 Gene
- (12) REFSEQ mRNAs :
- (9) Additional mRNA sequences :
- (23) Selected AceView cDNA sequences:
- (6) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for CHRNB4 Gene
CRISPR Products
-
OriGene CRISPR knockouts for CHRNB4
-
Santa Cruz Biotechnology (SCBT) CRISPR for CHRNB4
- GenScript: Design CRISPR guide RNA sequences for CHRNB4
miRNA Products
- Search ViGene Biosciences for CHRNB4
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for CHRNB4
- Browse OriGene Inhibitory RNA Products For CHRNB4
-
ViGene Biosciences ready-to-package AAV shRNAs for CHRNB4 gene
Clone Products
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for CHRNB4
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CHRNB4
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6a | · | 6b | ^ | 7 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | |||||||||||||||
| SP2: | - | - | - | - | |||||||||||||
| SP3: | - | ||||||||||||||||
| SP4: |
Expression for CHRNB4 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Neural Tube (Nervous System)
-
Brain (Nervous System)
- Mature Choroid Plexus Cells Choroid Plexus
- Cerebellum
- Midbrain tegmentum
-
Epithelial Cells
- Mature Choroid Plexus Cells Choroid Plexus
mRNA differential expression in normal tissues according to GTEx for CHRNB4 Gene
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for CHRNB4 Gene
NURSA nuclear receptor signaling pathways regulating expression of CHRNB4 Gene:
CHRNB4SOURCE GeneReport for Unigene cluster for CHRNB4 Gene:
Hs.624178Evidence on tissue expression from TISSUES for CHRNB4 Gene
- Nervous system(2.2)
Primer Products
-
OriGene qPCR primer pairs and template standards for CHRNB4
-
OriGene qPCR primer pairs for CHRNB4
No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for CHRNB4 Gene
Orthologs for CHRNB4 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | CHRNB4 34 35 |
|
||
| cow (Bos Taurus) |
Mammalia | CHRNB4 34 35 |
|
||
| dog (Canis familiaris) |
Mammalia | CHRNB4 34 35 |
|
||
| mouse (Mus musculus) |
Mammalia | Chrnb4 34 16 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Chrnb4 34 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | CHRNB4 35 |
|
OneToOne | |
| oppossum (Monodelphis domestica) |
Mammalia | CHRNB4 35 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | CHRNB4 34 35 |
|
||
| tropical clawed frog (Silurana tropicalis) |
Amphibia | chrnb4 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | LOC568566 34 |
|
||
| CHRNB4 35 |
|
OneToOne | |||
| fruit fly (Drosophila melanogaster) |
Insecta | nAcRalpha-96Aa 36 |
|
|
|
| nAcRalpha-7E 36 |
|
|
|||
| nAcRalpha-96Ab 36 |
|
|
|||
| nAcRbgr-64B 36 |
|
|
|||
| nAcRbgr-96A 36 |
|
|
|||
| nAcRalpha-80B 36 |
|
|
|||
| nAcRalpha-30D 36 |
|
|
|||
| worm (Caenorhabditis elegans) |
Secernentea | acr-2 36 |
|
|
|
| unc-38 36 |
|
|
|||
| unc-29 36 |
|
|
|||
| acr-3 36 |
|
|
|||
| lev-1 36 |
|
|
|||
| acr-12 36 |
|
|
|||
| acr-8 36 |
|
|
|||
| F18G5.4 36 |
|
|
|||
| ZK973.5 36 |
|
|
|||
| acr-9 36 |
|
|
|||
| acr-13 36 |
|
|
|||
| Y73F8A.30 36 |
|
|
|||
| acr-14 36 |
|
|
|||
| Y44A6E.1 36 |
|
|
|||
| acr-5 36 |
|
|
|||
| deg-3 36 |
|
|
|||
| sea squirt (Ciona savignyi) |
Ascidiacea | -- 35 |
|
OneToMany | |
| sea squirt (Ciona intestinalis) |
Ascidiacea | Cin.1655 34 |
|
- Species where no ortholog for CHRNB4 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Paralogs for CHRNB4 Gene
Paralogs for CHRNB4 Gene
(18) SIMAP similar genes for CHRNB4 Gene using alignment to 3 proteins:
Variants for CHRNB4 Gene
| SNP ID | Clin | Chr 15 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000166231 | -- | 78,650,209(+) | TTCTT(A/G)CAGTT | intron-variant | |
| rs1000219662 | -- | 78,634,982(+) | AATAG(G/T)TGCTG | intron-variant, utr-variant-5-prime | |
| rs1000253384 | -- | 78,638,577(+) | AGTGT(A/G)TGCCC | intron-variant, upstream-variant-2KB, utr-variant-5-prime | |
| rs1000268528 | -- | 78,656,282(+) | CAGTG(A/G)GCTGA | upstream-variant-2KB | |
| rs1000270355 | -- | 78,635,268(+) | TCATT(A/C)AATAT | intron-variant, upstream-variant-2KB |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv1249n106 | CNV | deletion | 24896259 |
| dgv8e24 | CNV | loss | 17666407 |
| esv1211887 | CNV | deletion | 17803354 |
| esv2059419 | CNV | deletion | 18987734 |
| esv2749912 | CNV | deletion | 23290073 |
| esv2749913 | CNV | deletion | 23290073 |
| esv2750601 | CNV | gain | 17666407 |
| nsv1045827 | CNV | gain | 25217958 |
| nsv1116464 | OTHER | inversion | 24896259 |
| nsv1628 | CNV | insertion | 18451855 |
| nsv457208 | CNV | gain | 19166990 |
| nsv477736 | CNV | novel sequence insertion | 20440878 |
| nsv570201 | CNV | gain | 21841781 |
| nsv570202 | CNV | loss | 21841781 |
Relevant External Links for CHRNB4 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CHRNB4 Gene
Disorders for CHRNB4 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| substance dependence |
|
|
| nicotine dependence, protection against |
|
|
Relevant External Links for CHRNB4
No data available for UniProtKB/Swiss-Prot and Genatlas for CHRNB4 Gene
Publications for CHRNB4 Gene
- Rare missense variants of neuronal nicotinic acetylcholine receptor altering receptor function are associated with sporadic amyotrophic lateral sclerosis. (PMID: 19628475) Sabatelli M. … Zollino M. (Hum. Mol. Genet. 2009) 3 22 46 64
- Transcription factors NF-Y and Sp1 are important determinants of the promoter activity of the bovine and human neuronal nicotinic receptor beta 4 subunit genes. (PMID: 11742001) Valor L.M. … Criado M. (J. Biol. Chem. 2002) 3 4 22 64
- Functional interaction between Lypd6 and nicotinic acetylcholine receptors. (PMID: 27344019) Arvaniti M. … Thomsen M.S. (J. Neurochem. 2016) 3 4 64
- GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease. (PMID: 21658281) Aouizerat B.E. … Tseng Z.H. (BMC Cardiovasc Disord 2011) 3 46 64
- Association and interaction analysis of variants in CHRNA5/CHRNA3/CHRNB4 gene cluster with nicotine dependence in African and European Americans. (PMID: 19859904) Li M.D. … Ma J.Z. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2010) 3 46 64
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