Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CHRM3-AS2 Gene

Subcategory (RNA class) for CHRM3-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for CHRM3-AS2 Gene

  • CHRM3 Antisense RNA 2 2 3 5
  • CHRM3 Antisense RNA 2 (Non-Protein Coding) 2

External Ids for CHRM3-AS2 Gene

Previous GeneCards Identifiers for CHRM3-AS2 Gene

  • GC01M239869

Summaries for CHRM3-AS2 Gene

GeneCards Summary for CHRM3-AS2 Gene

CHRM3-AS2 (CHRM3 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHRM3-AS2 Gene

Genomics for CHRM3-AS2 Gene

Regulatory Elements for CHRM3-AS2 Gene

Enhancers for CHRM3-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F239717 0.8 Ensembl ENCODE 15.2 +10.7 10676 5.3 PKNOX1 MAX MAFK MYC TRIM28 GABPA CHRM3-AS2 CHRM3 GC01P239706
GH01F239856 1 Ensembl ENCODE 4.8 -127.0 -127015 2.6 TBP ZNF146 JUN MAX FOS MAFK TCF7L2 NFE2L2 CHD2 SMARCC1 CHRM3-AS2 CHRM3-AS1
GH01F239730 0.5 FANTOM5 0.8 -0.1 -118 0.3 PKNOX1 ZNF692 CHRM3-AS2 CHRM3-AS1
GH01F239814 1.1 Ensembl ENCODE 0.2 -84.1 -84106 0.9 CTCF JUN TEAD4 MAX FEZF1 RAD21 RFX5 SMC3 SMARCC2 RCOR1 CHRM3 CHRM3-AS2 CHRM3-AS1
GH01F239815 1 Ensembl ENCODE 0.2 -86.2 -86246 2.2 TBP CBX3 PKNOX1 JUN MAX ZBTB40 TEAD3 RCOR1 FOS TCF7L2 CHRM3-AS1 CHRM3-AS2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CHRM3-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for CHRM3-AS2 Gene

239,703,381 bp from pter
239,730,465 bp from pter
27,085 bases
Minus strand

Genomic View for CHRM3-AS2 Gene

Genes around CHRM3-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHRM3-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHRM3-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHRM3-AS2 Gene

Proteins for CHRM3-AS2 Gene

Post-translational modifications for CHRM3-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CHRM3-AS2 Gene

Domains & Families for CHRM3-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CHRM3-AS2 Gene

Function for CHRM3-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CHRM3-AS2 Gene

Localization for CHRM3-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CHRM3-AS2 Gene

Pathways & Interactions for CHRM3-AS2 Gene

SuperPathways for CHRM3-AS2 Gene

No Data Available

Interacting Proteins for CHRM3-AS2 Gene

Gene Ontology (GO) - Biological Process for CHRM3-AS2 Gene


No data available for Pathways by source and SIGNOR curated interactions for CHRM3-AS2 Gene

Transcripts for CHRM3-AS2 Gene

mRNA/cDNA for CHRM3-AS2 Gene

(4) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CHRM3-AS2 Gene

CHRM3 antisense RNA 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CHRM3-AS2 Gene

No ASD Table

Relevant External Links for CHRM3-AS2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CHRM3-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CHRM3-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for CHRM3-AS2 Gene

This gene is overexpressed in Testis (x12.1), Small Intestine - Terminal Ileum (x8.1), Whole Blood (x7.8), and Spleen (x5.7).

SOURCE GeneReport for Unigene cluster for CHRM3-AS2 Gene:

genes like me logo Genes that share expression patterns with CHRM3-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CHRM3-AS2 Gene

Orthologs for CHRM3-AS2 Gene

Evolution for CHRM3-AS2 Gene

Gene Tree for CHRM3-AS2 (if available)
Gene Tree for CHRM3-AS2 (if available)

No data available for Orthologs for CHRM3-AS2 Gene

Paralogs for CHRM3-AS2 Gene

No data available for Paralogs for CHRM3-AS2 Gene

Variants for CHRM3-AS2 Gene

Sequence variations from dbSNP and Humsavar for CHRM3-AS2 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1014670 -- 239,710,610(+) GAATC(A/G)TTTAC intron-variant
rs1014671 -- 239,710,696(+) AGTAA(A/G)TTAAT intron-variant
rs10802793 -- 239,707,054(+) CTTGT(A/G)CTGAG intron-variant, downstream-variant-500B
rs10802794 -- 239,707,321(+) ATTCG(C/T)GAGTC intron-variant, nc-transcript-variant
rs10802795 -- 239,707,475(+) TGTTC(C/T)GAATT intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for CHRM3-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv954002 CNV duplication 24416366
nsv549435 CNV gain 21841781
nsv506986 OTHER sequence alteration 20534489
esv2759009 CNV gain 17122850

Relevant External Links for CHRM3-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CHRM3-AS2 Gene

Disorders for CHRM3-AS2 Gene

Relevant External Links for CHRM3-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CHRM3-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CHRM3-AS2 Gene

Publications for CHRM3-AS2 Gene

No publications were found for CHRM3-AS2 Gene.

Products for CHRM3-AS2 Gene

Sources for CHRM3-AS2 Gene

Loading form....