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Aliases for CHRM3-AS1 Gene

Subcategory (RNA class) for CHRM3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CHRM3-AS1 Gene

  • CHRM3 Antisense RNA 1 2 3 5
  • CHRM3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for CHRM3-AS1 Gene

Previous GeneCards Identifiers for CHRM3-AS1 Gene

  • GC01M240062

Summaries for CHRM3-AS1 Gene

GeneCards Summary for CHRM3-AS1 Gene

CHRM3-AS1 (CHRM3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHRM3-AS1 Gene

Genomics for CHRM3-AS1 Gene

Regulatory Elements for CHRM3-AS1 Gene

Enhancers for CHRM3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F239815 1 Ensembl ENCODE 12.7 +83.2 83162 2.2 TBP CBX3 PKNOX1 JUN MAX ZBTB40 TEAD3 RCOR1 FOS TCF7L2 CHRM3-AS1 CHRM3-AS2
GH01F239930 0.8 ENCODE 12.5 -31.3 -31297 1.8 PKNOX1 KLF1 ZNF76 ZIC2 ZNF335 ZNF121 HIC1 GLIS2 POLR2A ZBTB48 CHRM3-AS1 PSMD2P1 GC01P239936 GC01P239911
GH01F239897 0.9 Ensembl ENCODE 0.8 +1.7 1678 0.8 GTF2F1 CTCF ZNF654 ZFP37 TRIM22 REST ZNF2 RAD21 ZGPAT ZNF143 CHRM3-AS1 CHRM3-AS2
GH01F239909 0.6 Ensembl 0.4 -10.2 -10229 0.6 CTCF ZNF335 ZNF263 CEBPA BHLHE40 CEBPB FEZF1 GC01P239911 CHRM3-AS1
GH01F239814 1.1 Ensembl ENCODE 0.2 +85.3 85302 0.9 CTCF JUN TEAD4 MAX FEZF1 RAD21 RFX5 SMC3 SMARCC2 RCOR1 CHRM3 CHRM3-AS2 CHRM3-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CHRM3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CHRM3-AS1 Gene

Chromosome:
1
Start:
239,898,016 bp from pter
End:
239,899,872 bp from pter
Size:
1,857 bases
Orientation:
Minus strand

Genomic View for CHRM3-AS1 Gene

Genes around CHRM3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHRM3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHRM3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHRM3-AS1 Gene

Proteins for CHRM3-AS1 Gene

Post-translational modifications for CHRM3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CHRM3-AS1 Gene

Domains & Families for CHRM3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CHRM3-AS1 Gene

Function for CHRM3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CHRM3-AS1 Gene

Localization for CHRM3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CHRM3-AS1 Gene

Pathways & Interactions for CHRM3-AS1 Gene

SuperPathways for CHRM3-AS1 Gene

No Data Available

Interacting Proteins for CHRM3-AS1 Gene

Gene Ontology (GO) - Biological Process for CHRM3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CHRM3-AS1 Gene

Transcripts for CHRM3-AS1 Gene

mRNA/cDNA for CHRM3-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CHRM3-AS1 Gene

No ASD Table

Relevant External Links for CHRM3-AS1 Gene

GeneLoc Exon Structure for
CHRM3-AS1
ECgene alternative splicing isoforms for
CHRM3-AS1

Expression for CHRM3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CHRM3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CHRM3-AS1 Gene

This gene is overexpressed in Kidney - Cortex (x22.0) and Pancreas (x6.4).
genes like me logo Genes that share expression patterns with CHRM3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CHRM3-AS1 Gene

Orthologs for CHRM3-AS1 Gene

Evolution for CHRM3-AS1 Gene

ENSEMBL:
Gene Tree for CHRM3-AS1 (if available)
TreeFam:
Gene Tree for CHRM3-AS1 (if available)

No data available for Orthologs for CHRM3-AS1 Gene

Paralogs for CHRM3-AS1 Gene

No data available for Paralogs for CHRM3-AS1 Gene

Variants for CHRM3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CHRM3-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10399860 -- 239,901,238(+) GTGTA(A/G)GGCAA intron-variant, upstream-variant-2KB
rs10399945 -- 239,901,527(+) TGTCT(A/G)TAtac intron-variant, upstream-variant-2KB
rs10567817 -- 239,900,378(+) TATTC(-/TT)TTTTT intron-variant, upstream-variant-2KB
rs10802816 -- 239,898,335(+) AGTGG(C/T)TTGAT intron-variant, nc-transcript-variant
rs10926007 -- 239,897,769(+) TAATG(A/G)CAAAA intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for CHRM3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv81e214 CNV gain 21293372
esv2759009 CNV gain 17122850
esv35011 CNV gain 17911159
esv3589285 CNV gain 21293372
esv3891259 CNV gain 25118596
nsv519393 CNV gain 19592680
nsv827531 CNV gain 20364138

Relevant External Links for CHRM3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CHRM3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CHRM3-AS1 Gene

Disorders for CHRM3-AS1 Gene

Relevant External Links for CHRM3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CHRM3-AS1

No disorders were found for CHRM3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CHRM3-AS1 Gene

Publications for CHRM3-AS1 Gene

No publications were found for CHRM3-AS1 Gene.

Products for CHRM3-AS1 Gene

Sources for CHRM3-AS1 Gene

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