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Aliases for CHRM3-AS1 Gene

Subcategory (RNA class) for CHRM3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for CHRM3-AS1 Gene

  • CHRM3 Antisense RNA 1 2 3 5
  • CHRM3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for CHRM3-AS1 Gene

Previous GeneCards Identifiers for CHRM3-AS1 Gene

  • GC01M240062

Summaries for CHRM3-AS1 Gene

GeneCards Summary for CHRM3-AS1 Gene

CHRM3-AS1 (CHRM3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CHRM3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHRM3-AS1 Gene

Genomics for CHRM3-AS1 Gene

Regulatory Elements for CHRM3-AS1 Gene

Enhancers for CHRM3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H239815 1 Ensembl ENCODE 12.7 +83.1 83113 2.1 TBP PKNOX1 JUN MAX ZBTB40 TEAD3 RCOR1 FOS DEK CHD2 CHRM3-AS1 CHRM3-AS2
GH01H239930 0.4 ENCODE 12.5 -31.3 -31297 1.8 ATF2 CHRM3-AS1 PSMD2P1 GC01P239936 GC01P239911
GH01H239897 1 Ensembl ENCODE 0.7 +1.7 1734 0.7 GTF2F1 CTCF TBL1XR1 MAX ZNF2 RAD21 GATA3 SMC3 ZNF143 RCOR1 CHRM3-AS1 CHRM3-AS2
GH01H239856 0.7 ENCODE 0.3 +42.4 42399 2.6 TBP SMARCC1 JUN MAX CEBPB EP300 MAFF ZNF274 JUND STAT3 CHRM3-AS2 CHRM3-AS1
GH01H239893 0.5 ENCODE 0.4 +6.3 6317 0.2 STAT1 PKNOX1 ZNF692 NR3C1 CHRM3-AS1 CHRM3-AS2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CHRM3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CHRM3-AS1 Gene

Genomic Locations for CHRM3-AS1 Gene
1,857 bases
Minus strand

Genomic View for CHRM3-AS1 Gene

Genes around CHRM3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHRM3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHRM3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHRM3-AS1 Gene

Proteins for CHRM3-AS1 Gene

Post-translational modifications for CHRM3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CHRM3-AS1 Gene

Domains & Families for CHRM3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CHRM3-AS1 Gene

Function for CHRM3-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CHRM3-AS1 Gene

Localization for CHRM3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CHRM3-AS1 Gene

Pathways & Interactions for CHRM3-AS1 Gene

SuperPathways for CHRM3-AS1 Gene

No Data Available

Interacting Proteins for CHRM3-AS1 Gene

Gene Ontology (GO) - Biological Process for CHRM3-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for CHRM3-AS1 Gene

Drugs & Compounds for CHRM3-AS1 Gene

No Compound Related Data Available

Transcripts for CHRM3-AS1 Gene

mRNA/cDNA for CHRM3-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CHRM3-AS1 Gene

No ASD Table

Relevant External Links for CHRM3-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CHRM3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CHRM3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CHRM3-AS1 Gene

This gene is overexpressed in Kidney - Cortex (x22.0) and Pancreas (x6.4).
genes like me logo Genes that share expression patterns with CHRM3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CHRM3-AS1 Gene

Orthologs for CHRM3-AS1 Gene

Evolution for CHRM3-AS1 Gene

Gene Tree for CHRM3-AS1 (if available)
Gene Tree for CHRM3-AS1 (if available)

No data available for Orthologs for CHRM3-AS1 Gene

Paralogs for CHRM3-AS1 Gene

No data available for Paralogs for CHRM3-AS1 Gene

Variants for CHRM3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CHRM3-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000169250 -- 239,899,108(+) TGACT(A/G)TAGAC intron-variant
rs1000284720 -- 239,898,442(+) AGGCA(A/G)TCAGA intron-variant
rs1000560011 -- 239,897,851(+) TGTTA(A/T)TTCAG intron-variant, downstream-variant-500B
rs1000757538 -- 239,897,609(+) CAGTG(A/G)AACAG intron-variant, downstream-variant-500B
rs1001375881 -- 239,897,784(+) TTAGA(C/T)TTGCG intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for CHRM3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv827531 CNV gain 20364138
nsv519393 CNV gain 19592680
esv3891259 CNV gain 25118596
esv3589285 CNV gain 21293372
esv35011 CNV gain 17911159
esv2759009 CNV gain 17122850
dgv81e214 CNV gain 21293372

Relevant External Links for CHRM3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CHRM3-AS1 Gene

Disorders for CHRM3-AS1 Gene

Relevant External Links for CHRM3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CHRM3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CHRM3-AS1 Gene

Publications for CHRM3-AS1 Gene

No publications were found for CHRM3-AS1 Gene.

Products for CHRM3-AS1 Gene

Sources for CHRM3-AS1 Gene

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