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Aliases for CHODL-AS1 Gene

Subcategory (RNA class) for CHODL-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CHODL-AS1 Gene

  • CHODL Antisense RNA 1 2 3
  • CHODL Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 21 Open Reading Frame 39 2
  • Non-Protein Coding RNA 157 2
  • NCRNA00157 3
  • C21orf39 3

External Ids for CHODL-AS1 Gene

ORGUL Members for CHODL-AS1 Gene

Previous Symbols for CHODL-AS1 Gene

  • C21orf39
  • NCRNA00157

Summaries for CHODL-AS1 Gene

GeneCards Summary for CHODL-AS1 Gene

CHODL-AS1 (CHODL Antisense RNA 1) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHODL-AS1 Gene

Genomics for CHODL-AS1 Gene

Genomic Location for CHODL-AS1 Gene

Start:
17,835,016 bp from pter
End:
17,885,608 bp from pter
Size:
50,593 bases
Orientation:
Minus strand

Genomic View for CHODL-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CHODL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHODL-AS1 Gene

No data available for Regulatory Elements for CHODL-AS1 Gene

Proteins for CHODL-AS1 Gene

Post-translational modifications for CHODL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CHODL-AS1 Gene

Domains for CHODL-AS1 Gene

Gene Families for CHODL-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with CHODL-AS1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for CHODL-AS1 Gene

Function for CHODL-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CHODL-AS1 Gene

Localization for CHODL-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for CHODL-AS1 Gene

Pathways for CHODL-AS1 Gene

SuperPathways for CHODL-AS1 Gene

No Data Available

Interacting Proteins for CHODL-AS1 Gene

Gene Ontology (GO) - Biological Process for CHODL-AS1 Gene

None

No data available for Pathways by source for CHODL-AS1 Gene

Transcripts for CHODL-AS1 Gene

mRNA/cDNA for CHODL-AS1 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CHODL-AS1 Gene

CHODL antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CHODL-AS1 Gene

No ASD Table

Relevant External Links for CHODL-AS1 Gene

GeneLoc Exon Structure for
CHODL-AS1
ECgene alternative splicing isoforms for
CHODL-AS1

Expression for CHODL-AS1 Gene

mRNA expression in normal human tissues for CHODL-AS1 Gene

SOURCE GeneReport for Unigene cluster for CHODL-AS1 Gene Hs.404306

genes like me logo Genes that share expressions with CHODL-AS1: view

Orthologs for CHODL-AS1 Gene

Evolution for CHODL-AS1 Gene

ENSEMBL:
Gene Tree for CHODL-AS1 (if available)
TreeFam:
Gene Tree for CHODL-AS1 (if available)

No data available for Orthologs for CHODL-AS1 Gene

Paralogs for CHODL-AS1 Gene

No data available for Paralogs for CHODL-AS1 Gene

Variants for CHODL-AS1 Gene

Sequence variations from dbSNP and Humsavar for CHODL-AS1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type MAF
rs128368 -- 17,838,784(+) TTCAT(C/T)GTAAC intron-variant
rs189649 -- 17,858,571(-) TAATT(C/G)CTTCC intron-variant
rs243612 -- 17,882,385(-) acatg(A/G)tgaaa intron-variant
rs243613 -- 17,884,240(-) aaaaa(A/G)aaaGC intron-variant
rs243618 -- 17,835,269(+) TTAAA(C/T)GTAGC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for CHODL-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv834055 CNV Gain 17160897
nsv522920 CNV Loss 19592680

Relevant External Links for CHODL-AS1 Gene

HapMap Linkage Disequilibrium report
CHODL-AS1

Disorders for CHODL-AS1 Gene

No disorders were found for CHODL-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for CHODL-AS1 Gene

Publications for CHODL-AS1 Gene

  1. [IMAGE: molecular integration of the analysis of the human genome and its expression]. (PMID: 7757816) Auffray C. … Lamy B. (C. R. Acad. Sci. III, Sci. Vie 1995) 3
  2. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M. … Yaspo M.-L. (Nature 2000) 3

Products for CHODL-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate CHODL-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for CHODL-AS1
    • Block miRNA regulation of CHODL-AS1 using miScript Target Protectors

    Sources for CHODL-AS1 Gene

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