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Aliases for CHODL-AS1 Gene

Subcategory (RNA class) for CHODL-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CHODL-AS1 Gene

  • CHODL Antisense RNA 1 2 3
  • CHODL Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 21 Open Reading Frame 39 2
  • Non-Protein Coding RNA 157 2
  • NCRNA00157 3
  • C21orf39 3

External Ids for CHODL-AS1 Gene

ORGUL Members for CHODL-AS1 Gene

Previous HGNC Symbols for CHODL-AS1 Gene

  • C21orf39
  • NCRNA00157

Previous GeneCards Identifiers for CHODL-AS1 Gene

  • GC21M019208

Summaries for CHODL-AS1 Gene

GeneCards Summary for CHODL-AS1 Gene

CHODL-AS1 (CHODL Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHODL-AS1 Gene

Genomics for CHODL-AS1 Gene

Genomic Location for CHODL-AS1 Gene

Start:
17,835,016 bp from pter
End:
17,885,608 bp from pter
Size:
50,593 bases
Orientation:
Minus strand

Genomic View for CHODL-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CHODL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHODL-AS1 Gene

No data available for Regulatory Elements for CHODL-AS1 Gene

Proteins for CHODL-AS1 Gene

Post-translational modifications for CHODL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CHODL-AS1 Gene

Domains for CHODL-AS1 Gene

Gene Families for CHODL-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CHODL-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CHODL-AS1 Gene

Function for CHODL-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CHODL-AS1 Gene

Localization for CHODL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CHODL-AS1 Gene

Pathways for CHODL-AS1 Gene

SuperPathways for CHODL-AS1 Gene

No Data Available

Interacting Proteins for CHODL-AS1 Gene

Gene Ontology (GO) - Biological Process for CHODL-AS1 Gene

None

No data available for Pathways by source for CHODL-AS1 Gene

Transcripts for CHODL-AS1 Gene

mRNA/cDNA for CHODL-AS1 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CHODL-AS1 Gene

CHODL antisense RNA 1:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate CHODL-AS1
    • Block miRNA regulation of CHODL-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for CHODL-AS1

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for CHODL-AS1 Gene

    No ASD Table

    Relevant External Links for CHODL-AS1 Gene

    GeneLoc Exon Structure for
    CHODL-AS1
    ECgene alternative splicing isoforms for
    CHODL-AS1

    Expression for CHODL-AS1 Gene

    mRNA expression in normal human tissues for CHODL-AS1 Gene

    SOURCE GeneReport for Unigene cluster for CHODL-AS1 Gene Hs.404306

    genes like me logo Genes that share expressions with CHODL-AS1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for CHODL-AS1 Gene

    Orthologs for CHODL-AS1 Gene

    Evolution for CHODL-AS1 Gene

    ENSEMBL:
    Gene Tree for CHODL-AS1 (if available)
    TreeFam:
    Gene Tree for CHODL-AS1 (if available)

    No data available for Orthologs for CHODL-AS1 Gene

    Paralogs for CHODL-AS1 Gene

    No data available for Paralogs for CHODL-AS1 Gene

    Variants for CHODL-AS1 Gene

    Sequence variations from dbSNP and Humsavar for CHODL-AS1 Gene

    SNP ID Clin Chr 21 pos Sequence Context AA Info Type MAF
    rs128368 -- 17,838,784(+) TTCAT(C/T)GTAAC intron-variant
    rs189649 -- 17,858,571(-) TAATT(C/G)CTTCC intron-variant
    rs243612 -- 17,882,385(-) acatg(A/G)tgaaa intron-variant
    rs243613 -- 17,884,240(-) aaaaa(A/G)aaaGC intron-variant
    rs243618 -- 17,835,269(+) TTAAA(C/T)GTAGC downstream-variant-500B

    Structural Variations from Database of Genomic Variants (DGV) for CHODL-AS1 Gene

    Variant ID Type Subtype PubMed ID
    nsv834055 CNV Gain 17160897
    nsv522920 CNV Loss 19592680

    Relevant External Links for CHODL-AS1 Gene

    HapMap Linkage Disequilibrium report
    CHODL-AS1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CHODL-AS1 Gene

    Disorders for CHODL-AS1 Gene

    No disorders were found for CHODL-AS1 Gene.

    No data available for UniProtKB/Swiss-Prot for CHODL-AS1 Gene

    Publications for CHODL-AS1 Gene

    1. [IMAGE: molecular integration of the analysis of the human genome and its expression]. (PMID: 7757816) Auffray C. … Lamy B. (C. R. Acad. Sci. III, Sci. Vie 1995) 3
    2. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M. … Yaspo M.-L. (Nature 2000) 3

    Products for CHODL-AS1 Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate CHODL-AS1
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for CHODL-AS1
      • Block miRNA regulation of CHODL-AS1 using miScript Target Protectors

      Sources for CHODL-AS1 Gene

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