Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CHMP1A Gene

protein-coding   GIFtS: 53
GCID: GC16M089710

charged multivesicular body protein 1A

(Previous names: procollagen (type III) N-endopeptidase, chromatin modifying...)
(Previous symbols: PRSM1, PCOLN3)
 Explore 7 diseases affiliated with
CHMP1A via our new
 Human Malady Compendium 
Biological research products
for CHMP1A
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Charged Multivesicular Body Protein 1A1 2     PCH82
PCOLN31 2 3 5     VPS46-12
PRSM11 2 3 5     VPS46A2
CHMP11 2 3     Charged Multivesicular Body Protein 1/Chromatin Modifying Protein 12
Chromatin Modifying Protein 1A1 2     Protease, Metallo, 1, 33kD2
Procollagen (Type III) N-Endopeptidase1 2     CHMP1a3
KIAA00471 3     Vps46-13
Vacuolar Protein Sorting-Associated Protein 46-12 3     Chromatin-Modifying Protein 1a3
Vps46A1     HVps46-11

External Ids:    HGNC: 87401   Entrez Gene: 51192   Ensembl: ENSG000001311657   OMIM: 1640105   UniProtKB: Q9HD423   

Export aliases for CHMP1A gene to outside databases

Previous GC identifers: GC16M088239 GC16M075406


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for CHMP1A:
This gene encodes a member of the CHMP/Chmp family of proteins which are involved in multivesicular body sorting of
proteins to the interiors of lysosomes. The initial prediction of the protein sequence encoded by this gene suggested
that the encoded protein was a metallopeptidase. The nomenclature has been updated recently to reflect the correct
biological function of this encoded protein. Several transcripts encoding different isoforms have been found for this
gene. (provided by RefSeq, Dec 2012)

UniProtKB/Swiss-Prot: CHM1A_HUMAN, Q9HD42
Function: Probable peripherally associated component of the endosomal sorting required for transport complex III
(ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into
MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting
membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as
stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential
function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane
before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events,
such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses).
ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities,
possibly in conjunction with the AAA ATPase VPS4. Involved in cytokinesis. Involved in recruiting VPS4A and/or VPS4B
to the midbody of dividing cells. May also be involved in chromosome condensation. Targets the Polycomb group (PcG)
protein BMI1/PCGF4 to regions of condensed chromatin. May play a role in stable cell cycle progression and in PcG gene
silencing

Gene Wiki entry for CHMP1A


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000016.9  NC_018927.1  NT_010542.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CHMP1A gene promoter:
         SREBP-1c   MyoD   AP-2gamma   Meis-1b   Arnt   SREBP-1b   HNF-4alpha1   E2F   E2F-1   SREBP-1a   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCHMP1A promoter sequence
   Search SABiosciences Chromatin IP Primers for CHMP1A

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CHMP1A


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 16q24.3   Ensembl cytogenetic band:  16q24.3   HGNC cytogenetic band: 16q24.3

CHMP1A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CHMP1A gene location

GeneLoc information about chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16M089710:  view genomic region     (about GC identifiers)

Start:
89,710,839 bp from pter      End:
89,724,253 bp from pter
Size:
13,415 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: CHM1A_HUMAN, Q9HD42 (See protein sequence)
Recommended Name: Charged multivesicular body protein 1a  
Size: 196 amino acids; 21703 Da
Subunit: Probable peripherally associated component of the endosomal sorting required for transport complex III
(ESCRT-III). ESCRT-III components are thought to multimerize to form a flat lattice on the perimeter membrane of the
endosome. Several assembly forms of ESCRT-III may exist that interact and act sequentally. Self-associates. Interacts
with CHMP1B. Interacts with VPS4A. Interacts with VPS4B. Interacts with PHF1. Interacts with IST1. Interacts with
MITD1
Subcellular location: Cytoplasm. Endosome membrane; Peripheral membrane protein. Nucleus matrix. Note=The cytoplasmic
form is partially membrane-associated and localizes to early endosomes. The nuclear form remains associated with the
chromosome scaffold during mitosis. On overexpression, it localizes to nuclear bodies characterized by
nuclease-resistant condensed chromatin
Caution: Was originally (PubMed:8863740) thought to be a metalloprotease (PRSM1). This was based on a wrong translation
of the ORF which gave rise to a putative protein of 318 AA containing a pattern reminiscent of zinc metalloproteases
Sequence caution: Sequence=AAC50775.1; Type=Erroneous translation; Note=Wrong choice of frame; Sequence=BAA07557.1;
Type=Erroneous translation; Note=Wrong choice of frame;
3 PDB 3D structures from and Proteopedia for CHMP1A:
2JQ9 (3D)        2YMB (3D)        4A5X (3D)    
Secondary accessions: A2RU09 Q14468 Q15779 Q96G31
Alternative splicing: 2 isoforms:  Q9HD42-1   Q9HD42-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for CHMP1A: NX_Q9HD42

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9HD42

  • CHMP1A Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_001076783.1  NP_002759.2  

    ENSEMBL proteins: 
     ENSP00000380998   ENSP00000442120   ENSP00000449243   ENSP00000447899   ENSP00000253475  

    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    OriGene Protein Over-expression Lysate (see all 2): CHMP1A
    OriGene Custom Protein Services for CHMP1A 
    GenScript Custom Purified and Recombinant Proteins Services for CHMP1A
    Novus Biologicals CHMP1A Proteins
    Novus Biologicals CHMP1A Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for CHMP1A

    Gene Ontology (GO): 5/6 cellular component terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000794condensed nuclear chromosome IDA11559747
    GO:0005769early endosome IDA11559748
    GO:0005815microtubule organizing center IDA11559748
    GO:0010008endosome membrane IEA--
    GO:0012505endomembrane system IDA11559748


    CHMP1A for ontologies           About GeneDecksing



    CHMP1A Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for CHMP1A 
    GenScript Custom Superior Antibodies Services for CHMP1A
    Novus Biologicals CHMP1A Antibodies
    Abcam antibodies for CHMP1A 
    Uscn Antibodies for CHMP1A
    ThermoFisher Antibodies for CHMP1A

    Assay Products for CHMP1A: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for CHMP1A
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for CHMP1A


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    CHMP1A for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR005024 Snf7

    Graphical View of Domain Structure for InterPro Entry Q9HD42

    ProtoNet protein and cluster: Q9HD42

    1 Blocks protein family: IPB005024 Eukaryotic protein of unknown function DUF279

    UniProtKB/Swiss-Prot: CHM1A_HUMAN, Q9HD42
    Similarity: Belongs to the SNF7 family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: CHM1A_HUMAN, Q9HD42
    Function: Probable peripherally associated component of the endosomal sorting required for transport complex III
    (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into
    MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting
    membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as
    stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential
    function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane
    before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events,
    such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses).
    ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities,
    possibly in conjunction with the AAA ATPase VPS4. Involved in cytokinesis. Involved in recruiting VPS4A and/or VPS4B
    to the midbody of dividing cells. May also be involved in chromosome condensation. Targets the Polycomb group (PcG)
    protein BMI1/PCGF4 to regions of condensed chromatin. May play a role in stable cell cycle progression and in PcG gene
    silencing
    Induction: By muristerone

    miRNA
    Products:
        
    OriGene 3'-UTR Clone (see all 2): CHMP1A
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CHMP1A
    3 QIAGEN miScript miRNA Assays for microRNAs that regulate CHMP1A:
    hsa-miR-182 hsa-miR-1271 hsa-miR-96
    SwitchGear 3'UTR luciferase reporter plasmidCHMP1A 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CHMP1A (see all 7)
    OriGene shRNA RFP: CHMP1A
    OriGene siRNA: CHMP1A
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CHMP1A

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for CHMP1A

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CHMP1A (see all 4)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CHMP1A (see all 2)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 2): CHMP1A (NM_002768)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CHMP1A
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CHMP1A 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for CHMP1A
    Search LifeMap BioReagents cell lines for CHMP1A

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CHMP1A

    Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI--
    GO:0008237metallopeptidase activity TAS8863740
    GO:0008270zinc ion binding TAS8863740
    GO:0019904protein domain specific binding IPI17928862


    CHMP1A for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for CHMP1A:
     Increased viability after born 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for CHMP1A

    STRING Interaction Network Preview (showing 5 interactants - click image to see 10)

    5/23 Interacting proteins for CHMP1A (Q9HD421, 2, 3 ENSP000002534754) via UniProtKB, MINT, STRING, and/or I2D (see all 23)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    USP8P408181, 2, 3, ENSP000003022394EBI-1057156,EBI-1050865 MINT-6946783 I2D: score=3 STRING: ENSP00000302239
    STAMBPO956301, 3, ENSP000003447424EBI-1057156,EBI-396676 I2D: score=2 STRING: ENSP00000344742
    USP54Q70EL12, 3, ENSP000003452164MINT-6946930 I2D: score=1 STRING: ENSP00000345216
    KIAA1715Q9C0E83, ENSP000002727484I2D: score=2 STRING: ENSP00000272748
    VPS4AQ9UN373, ENSP000002549504I2D: score=2 STRING: ENSP00000254950
    About this table

    Gene Ontology (GO): 5/10 biological process terms (GO ID links to tree view) (see all 10):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000910cytokinesis IMP19129479
    GO:0006351transcription, DNA-dependent IEA--
    GO:0007076mitotic chromosome condensation IDA11559747
    GO:0015031protein transport IEA--
    GO:0016192vesicle-mediated transport IDA11559748


    CHMP1A for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CHMP1A
    Search CenterWatch for drugs/clinical trials and news about CHMP1A / CHM1A 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for CHMP1A gene (2 alternative transcripts): 
    NM_001083314.3  NM_002768.4  

    Unigene Cluster for CHMP1A:

    Charged multivesicular body protein 1A
    Hs.589427  [show with all ESTs]
    Unigene Representative Sequence: NR_046418
    11 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000397901(uc002fnu.3 uc002fnv.3) ENST00000547687(uc002fnt.3)
    ENST00000535997 ENST00000549139 ENST00000550102 ENST00000549328 ENST00000551981
    ENST00000548650 ENST00000547614 ENST00000550872 ENST00000253475

    miRNA
    Products:
         
    OriGene 3'-UTR Clone (see all 2): CHMP1A
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CHMP1A
    3 QIAGEN miScript miRNA Assays for microRNAs that regulate CHMP1A:
    hsa-miR-182 hsa-miR-1271 hsa-miR-96
    SwitchGear 3'UTR luciferase reporter plasmidCHMP1A 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CHMP1A (see all 7)
    OriGene shRNA RFP: CHMP1A
    OriGene siRNA: CHMP1A
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CHMP1A
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CHMP1A (see all 4)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CHMP1A (see all 2)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 2): CHMP1A (NM_002768)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CHMP1A
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CHMP1A 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CHMP1A
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat CHMP1A
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CHMP1A
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CHMP1A

    Additional cDNA sequence: 

    AF281063.1 AK302055.1 BC007527.1 BC010000.2 BC132711.1 BC132713.1 BT006841.1 D38554.1 
    NR_046418.2 U58048.1 

    19 DOTS entries:

    DT.446956  DT.100886073  DT.100886047  DT.97859944  DT.99983922  DT.91754015  DT.95159578  DT.100886070 
    DT.102833352  DT.100886049  DT.100886058  DT.100886065  DT.120728264  DT.120728265  DT.120728291  DT.75197121 
    DT.95100760  DT.95320001  DT.75126166 

    24/380 AceView cDNA sequences (see all 380):

    BQ723635 BU731045 CD366308 CR618565 BX366185 BG480548 BX443722 BF037744 
    BM820370 AI193119 BE514420 BU167140 BM763906 CR620879 AW078609 BP365411 
    BP342283 BM818966 AI355397 AA669311 BC007527 BQ691227 BU944725 AW327795 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CHMP1A expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GGCCAGGTGG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See CHMP1A Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CHMP1A

    SOURCE GeneReport for Unigene cluster: Hs.589427

    UniProtKB/Swiss-Prot: CHM1A_HUMAN, Q9HD42
    Tissue specificity: Expressed in placenta, cultured skin fibroblasts and in osteoblast cell line MG-63

        SABiosciences Custom PCR Arrays for CHMP1A
    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CHMP1A
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat CHMP1A
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CHMP1A
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CHMP1A
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CHMP1A

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for CHMP1A gene from 7/33 species (see all 33)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves CHMP1A1 chromatin modifying protein 1A 85.2(n)
    94.9(a)
      415841  NM_001025440.1  NP_001020611.1 
    lizard
    (Anolis carolinensis)
    Reptilia CHMP1A6
    --
    87(a)
    1 ↔ 1
    GL343487.1(602460-606605)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.255842 Xenopus laevis transcribed sequence with weak similarity more 79.63(n)    CA793301.1 
    zebrafish
    (Danio rerio)
    Actinopterygii zgc659142 hypothetical protein MGC65914 83.54(n)   393535  AY398372.1 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes DID21 Did2p 53.2(n)
    48.19(a)
      853906   NP_012961.3 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons VPS46.26
    VPS46.16
    vacuolar protein sorting 46.1
    43(a)
    41(a)
    many ↔ many
    many ↔ many
    1(27473826-27475122)
    1(6099089-6100315)
    rice
    (Oryza sativa)
    Liliopsida --
    SNF7 domain containing protein, putative, expresse...
    43(a)
    1 → many
    6(26214485-26217669)


    ENSEMBL Gene Tree for CHMP1A (if available)
    TreeFam Gene Tree for CHMP1A (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for CHMP1A gene
    CHMP1B2  
    2 SIMAP similar genes for CHMP1A using alignment to 5 protein entries:     CHM1A_HUMAN (see all proteins):
    PCOLN3    CHMP1B

    CHMP1A for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for CHMP1A
    PGOHUM00000243947


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/486 NCBI SNPs in CHMP1A are shown (see all 486    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 16 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs118620141,2
    C,F,H,--75417825(+) ggttaC/Taggcg 1 -- us2k11Minor allele frequency- T:0.50NA 4
    rs96736061,2
    C,H--75418459(+) TTTGGT/AATCCC 1 -- us2k14Minor allele frequency- A:0.00NS EA 418
    rs1178946361,2
    C,F,--75418489(+) CCCCAG/AATGTA 1 -- us2k11Minor allele frequency- A:0.02NA 120
    rs767624531,2
    C,--75419117(+) TCCCGG/AGTCGG 1 -- us2k14Minor allele frequency- A:0.44WA CSA NA 241
    rs620671011,2
    --75420517(+) GAAATC/TTTAGT 1 -- int12Minor allele frequency- T:0.02NA 122
    rs80617221,2
    C,F,--75420592(+) GAGGGG/TCTGGG 1 -- int11Minor allele frequency- T:0.03NA 120
    rs740338251,2
    C,--75420856(+) CCCCAA/GAAGTA 1 -- int12Minor allele frequency- G:0.05WA 120
    rs99348211,2
    C,--75421410(+) tggccA/Gacgtg 1 -- int10--------
    rs560411381,2
    C,--89710358(+) CCACCG/AAGCAG 3 -- int12Minor allele frequency- A:0.04WA 120
    rs3529391,2
    C,F,A,H,--89710378(-) ATGCAC/TTGGGG 3 -- int19Minor allele frequency- T:0.40NA WA EA 370

    HapMap Linkage Disequilibrium report for CHMP1A (89710839 - 89724253 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 2 variations for CHMP1A
         2 Indels: 11853 72701
    Human Gene Mutation Database (HGMD): CHMP1A

    SABiosciences Cancer Mutation PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CHMP1A
    DNA2.0 Custom Variant and Variant Library Synthesis for CHMP1A

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    CHMP1A for disorders           About GeneDecksing

    OMIM gene information: 164010    OMIM disorders: --

    7 diseases for CHMP1A:    About MalaCards
    ataxia telangiectasia    lymphedema    hepatitis c    conjunctivitis
    ataxia    hepatitis    pancreatitis


    Export disorders for CHMP1A gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CHMP1A gene, integrated from 9 sources (see all 35):
    (articles sorted by number of sources associating them with CHMP1A)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. CHMP1 is a novel nuclear matrix protein affecting chromatin structure and cell-cycle progression. (PubMed id 11559747)1, 2, 3, 9 Stauffer D.R....Hollenberg S.M. (2001)
    2. CHMP1 functions as a member of a newly defined family of vesicle trafficking proteins. (PubMed id 11559748)1, 2, 3 Howard T.L....Hollenberg S.M. (2001)
    3. Biochemical analyses of human IST1 and its function in cytokinesis. (PubMed id 19129479)1, 2, 9 Bajorek M....Sundquist W.I. (2009)
    4. Molecular cloning, expression and chromosomal localization of a human gene encoding a 33 kDa putative metallopeptidase (PRSM1). (PubMed id 8863740)1, 2, 9 Scott I.C.... Kadler K.E. (1996)
    5. ESCRT-III recognition by VPS4 ATPases. (PubMed id 17928862)1, 2 Stuchell-Brereton M.D.... Sundquist W.I. (2007)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    7. The protein network of HIV budding. (PubMed id 14505570)1, 2 von Schwedler U.K.... Sundquist W.I. (2003)
    8. Divergent retroviral late-budding domains recruit vacuolar protein sorting factors by using alternative adaptor proteins. (PubMed id 14519844)1, 2 Martin-Serrano J.... Bieniasz P.D. (2003)
    9. Prediction of the coding sequences of unidentified human genes. II. The coding sequences of 40 new genes (KIAA0041-KIAA0080) deduced by analysis of cDNA clones from human cell line KG-1. (PubMed id 7584044)1, 2 Nomura N....Tabata S. (1994)
    10. Chmp1A functions as a novel tumor suppressor gene in human embryonic kidney and ductal pancreatic tumor cells. (PubMed id 18787405)1, 9 Li J....Park M. (2008)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 5119 HGNC: 8740 AceView: PCOLN3 Ensembl:ENSG00000131165 euGenes: HUgn5119
    ECgene: CHMP1A H-InvDB: CHMP1A

    (According to HUGE)
    About This Section
    HUGE: KIAA0047

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CHMP1A Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for CHMP1A gene:
    Search GeneIP for patents involving CHMP1A

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   OriGene shRNA RFP for CHMP1A  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CHMP1A   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CHMP1A  
     OriGene Protein Over-expression Lysate for CHMP1A   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for CHMP1A   OriGene 3'-UTR Clone for CHMP1A  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CHMP1A   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CHMP1A  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for CHMP1A   OriGene Custom Protein Services for CHMP1A  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CHMP1A
     Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CHMP1A
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CHMP1A
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CHMP1A
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CHMP1A
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CHMP1A
     GenScript Custom Purified and Recombinant Proteins Services for CHMP1A GenScript cDNA clones with any tag delivered in your preferred vector for CHMP1A
     GenScript Custom Assay Services for CHMP1A GenScript Custom Superior Antibodies Services for CHMP1A
     GenScript Custom overexpressing Cell Line Services for CHMP1A CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in CHMP1A promoter
     Search Chromatin IP Primers for CHMP1A
     RT2 qPCR Primer Assay in human, mouse, rat CHMP1A
     GNC Network for CHMP1A
     SABiosciences Custom PCR Arrays for CHMP1A
     Search Tocris compounds for CHMP1A
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     CHMP1A antibodies
     CHMP1A proteins
     CHMP1A lysates
     Antibodies for CHMP1A
     See all of Abcam's Antibodies, Kits and Proteins for CHMP1A
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     CHMP1A Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for CHMP1A
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CHMP1A
     SwitchGear 3'UTR luciferase reporter plasmids for CHMP1A
     SwitchGear Promoter luciferase reporter plasmids for CHMP1A
     ThermoFisher Antibodies for CHMP1A
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CHMP1A
           
    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      CHMP1A gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 100 solr: 1.4