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Aliases for CHL1-AS2 Gene

Subcategory (RNA class) for CHL1-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for CHL1-AS2 Gene

  • CHL1 Antisense RNA 2 2 3 5
  • CHL1 Antisense RNA 2 (Non-Protein Coding) 2

External Ids for CHL1-AS2 Gene

Previous GeneCards Identifiers for CHL1-AS2 Gene

  • GC03M000238

Summaries for CHL1-AS2 Gene

GeneCards Summary for CHL1-AS2 Gene

CHL1-AS2 (CHL1 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHL1-AS2 Gene

Genomics for CHL1-AS2 Gene

Regulatory Elements for CHL1-AS2 Gene

Enhancers for CHL1-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F000242 0.6 ENCODE 17.3 -80.2 -80177 1.3 FOS MAFK NFE2L2 TRIM28 CHL1-AS2 RNU6-1194P CHL1
GH03F000244 0.5 ENCODE 15.6 -80.9 -80924 0.2 FOS CHL1-AS2 RNU6-1194P CHL1
GH03F000212 0.7 ENCODE 11.6 -49.2 -49204 0.2 HDGF TBP PKNOX1 YBX1 RELA EED ETV6 CREM MTA2 JUNB CHL1-AS2 CHL1 RNU6-1194P
GH03F000197 0.5 ENCODE 11.1 -34.3 -34253 1.1 ZFP69B KLF1 GLIS2 SP3 POLR2A GLIS1 ZBTB26 CHL1-AS2 CHL1 RNU6-1194P
GH03F000277 0.6 Ensembl ENCODE 4.2 -115.3 -115281 2.2 TBP PKNOX1 ASH2L BMI1 EBF1 RELA POLR2A EED NFE2 ETV6 CHL1-AS2 RNU6-1194P CHL1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CHL1-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for CHL1-AS2 Gene

112,166 bp from pter
163,349 bp from pter
51,184 bases
Minus strand

Genomic View for CHL1-AS2 Gene

Genes around CHL1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHL1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHL1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHL1-AS2 Gene

Proteins for CHL1-AS2 Gene

Post-translational modifications for CHL1-AS2 Gene

No Post-translational modifications

Other Protein References for CHL1-AS2 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for CHL1-AS2 Gene

Domains & Families for CHL1-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CHL1-AS2 Gene

Function for CHL1-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CHL1-AS2 Gene

Localization for CHL1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CHL1-AS2 Gene

Pathways & Interactions for CHL1-AS2 Gene

SuperPathways for CHL1-AS2 Gene

No Data Available

Interacting Proteins for CHL1-AS2 Gene

Gene Ontology (GO) - Biological Process for CHL1-AS2 Gene


No data available for Pathways by source and SIGNOR curated interactions for CHL1-AS2 Gene

Transcripts for CHL1-AS2 Gene

mRNA/cDNA for CHL1-AS2 Gene

(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CHL1-AS2 Gene

No ASD Table

Relevant External Links for CHL1-AS2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CHL1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CHL1-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for CHL1-AS2 Gene

This gene is overexpressed in Nerve - Tibial (x7.7).
genes like me logo Genes that share expression patterns with CHL1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CHL1-AS2 Gene

Orthologs for CHL1-AS2 Gene

Evolution for CHL1-AS2 Gene

Gene Tree for CHL1-AS2 (if available)
Gene Tree for CHL1-AS2 (if available)

No data available for Orthologs for CHL1-AS2 Gene

Paralogs for CHL1-AS2 Gene

No data available for Paralogs for CHL1-AS2 Gene

Variants for CHL1-AS2 Gene

Sequence variations from dbSNP and Humsavar for CHL1-AS2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1006032 -- 199,189(-) CGTTC(C/T)GCCAT intron-variant, upstream-variant-2KB
rs1006033 -- 198,993(-) AAACT(C/G)TGGGA intron-variant, upstream-variant-2KB
rs1006034 -- 198,980(-) AACTT(C/T)TTATT intron-variant, upstream-variant-2KB
rs1008035 -- 173,596(-) TCTCT(A/G)TATAT intron-variant
rs10154927 -- 111,878(+) TCCCA(C/T)GTAGG downstream-variant-500B

Relevant External Links for CHL1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CHL1-AS2 Gene

Disorders for CHL1-AS2 Gene

No disorders were found for CHL1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CHL1-AS2 Gene

Publications for CHL1-AS2 Gene

  1. Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D. (PMID: 22041458) Clark S.L. … van den Oord E.J. (Psychol Med 2012) 3 64
  2. Genome-wide association studies of adolescent idiopathic scoliosis suggest candidate susceptibility genes. (PMID: 21216876) Sharma S. … Wise C.A. (Hum. Mol. Genet. 2011) 3 64
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for CHL1-AS2 Gene

Sources for CHL1-AS2 Gene

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