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Aliases for CHL1-AS1 Gene

Subcategory (RNA class) for CHL1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for CHL1-AS1 Gene

  • CHL1 Antisense RNA 1 2 3 5
  • CHL1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for CHL1-AS1 Gene

Previous GeneCards Identifiers for CHL1-AS1 Gene

  • GC00U933761

Summaries for CHL1-AS1 Gene

GeneCards Summary for CHL1-AS1 Gene

CHL1-AS1 (CHL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHL1-AS1 Gene

Genomics for CHL1-AS1 Gene

Regulatory Elements for CHL1-AS1 Gene

Enhancers for CHL1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F000354 0.6 ENCODE 0.3 +31.2 31243 0.2 CTCF ZNF654 CBX3 ZNF511 WRNIP1 CEBPB TRIM22 REST RAD21 GATA3 CHL1-AS1 RPS8P6
GH03F000355 0.2 ENCODE 0.3 +30.2 30168 1.0 FOS CHL1 CHL1-AS1 RPS8P6
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CHL1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CHL1-AS1 Gene

363,370 bp from pter
385,795 bp from pter
22,426 bases
Minus strand

Genomic View for CHL1-AS1 Gene

Genes around CHL1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHL1-AS1 Gene

Proteins for CHL1-AS1 Gene

Post-translational modifications for CHL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CHL1-AS1 Gene

Domains & Families for CHL1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CHL1-AS1 Gene

Function for CHL1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CHL1-AS1 Gene

Localization for CHL1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CHL1-AS1 Gene

Pathways & Interactions for CHL1-AS1 Gene

SuperPathways for CHL1-AS1 Gene

No Data Available

Interacting Proteins for CHL1-AS1 Gene

Gene Ontology (GO) - Biological Process for CHL1-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for CHL1-AS1 Gene

Transcripts for CHL1-AS1 Gene

mRNA/cDNA for CHL1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CHL1-AS1 Gene

No ASD Table

Relevant External Links for CHL1-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CHL1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CHL1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CHL1-AS1 Gene

This gene is overexpressed in Nerve - Tibial (x9.4).
genes like me logo Genes that share expression patterns with CHL1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CHL1-AS1 Gene

Orthologs for CHL1-AS1 Gene

Evolution for CHL1-AS1 Gene

Gene Tree for CHL1-AS1 (if available)
Gene Tree for CHL1-AS1 (if available)

No data available for Orthologs for CHL1-AS1 Gene

Paralogs for CHL1-AS1 Gene

No data available for Paralogs for CHL1-AS1 Gene

Variants for CHL1-AS1 Gene

Sequence variations from dbSNP and Humsavar for CHL1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs11129708 -- 381,216(+) GGGAG(G/T)ACATG intron-variant
rs111369103 -- 371,777(+) TTTTC(A/G)GGAGA intron-variant
rs111476102 -- 379,893(+) ACGAG(A/G)TTTCT intron-variant
rs111527018 -- 366,327(+) TTAGC(A/C/T)GGGCA intron-variant
rs111531449 -- 377,592(+) CATAA(A/T)TTTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CHL1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4608n100 CNV gain 25217958
dgv4613n100 CNV loss 25217958
esv2667629 CNV deletion 23128226
esv2675472 CNV deletion 23128226
esv2759122 CNV gain+loss 17122850
esv2763731 CNV gain+loss 21179565
esv3594893 CNV loss 21293372
esv3594894 CNV gain 21293372
esv3594898 CNV loss 21293372
esv3594899 CNV gain 21293372
esv3594900 CNV loss 21293372
esv3594901 CNV gain 21293372
esv3594902 CNV loss 21293372
nsv1004600 CNV loss 25217958
nsv1005290 CNV loss 25217958
nsv1010970 CNV gain 25217958
nsv1015041 CNV gain 25217958
nsv469898 CNV loss 18288195
nsv526340 CNV loss 19592680
nsv589242 CNV gain 21841781
nsv589291 CNV loss 21841781
nsv589293 CNV loss 21841781
nsv834589 CNV gain 17160897

Relevant External Links for CHL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CHL1-AS1 Gene

Disorders for CHL1-AS1 Gene

Relevant External Links for CHL1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CHL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CHL1-AS1 Gene

Publications for CHL1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CHL1-AS1 Gene

Sources for CHL1-AS1 Gene

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