Aliases for CHL1 Gene
Aliases for CHL1 Gene
External Ids for CHL1 Gene
- HGNC: 1939
- Entrez Gene: 10752
- Ensembl: ENSG00000134121
- OMIM: 607416
- UniProtKB: O00533
Previous GeneCards Identifiers for CHL1 Gene
- GC03P000167
Summaries for CHL1 Gene
-
The protein encoded by this gene is a member of the L1 gene family of neural cell adhesion molecules. It is a neural recognition molecule that may be involved in signal transduction pathways. The deletion of one copy of this gene may be responsible for mental defects in patients with 3p- syndrome. This protein may also play a role in the growth of certain cancers. Alternate splicing results in both coding and non-coding variants. [provided by RefSeq, Nov 2011]
GeneCards Summary for CHL1 Gene
CHL1 (Cell Adhesion Molecule L1 Like) is a Protein Coding gene. Diseases associated with CHL1 include Large Cell Carcinoma With Rhabdoid Phenotype and Myositis Fibrosa. Among its related pathways are L1CAM interactions and Developmental Biology. Gene Ontology (GO) annotations related to this gene include protease binding. An important paralog of this gene is NRCAM.
UniProtKB/Swiss-Prot for CHL1 Gene
-
Extracellular matrix and cell adhesion protein that plays a role in nervous system development and in synaptic plasticity. Both soluble and membranous forms promote neurite outgrowth of cerebellar and hippocampal neurons and suppress neuronal cell death. Plays a role in neuronal positioning of pyramidal neurons and in regulation of both the number of interneurons and the efficacy of GABAergic synapses. May play a role in regulating cell migration in nerve regeneration and cortical development. Potentiates integrin-dependent cell migration towards extracellular matrix proteins. Recruits ANK3 to the plasma membrane (By similarity).
Additional gene information for CHL1 Gene
- Monarch Initiative
- Search for CHL1 at DataMed
- Search for CHL1 at HumanCyc
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHL1 Gene
Genomics for CHL1 Gene
GeneHancer (GH) Regulatory Elements for CHL1 Gene
Promoters and enhancers for CHL1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH03I000197 | Promoter/Enhancer | 1.1 | Ensembl ENCODE | 550.8 | +1.0 | 1042 | 1.1 | MXI1 KLF1 SP3 ZFP69B GLIS2 POLR2A GLIS1 ZBTB26 EZH2 | CHL1 CHL1-AS2 RNU6-1194P | |
| GH03I000198 | Promoter | 0.8 | EPDnew | 550.8 | +0.1 | 148 | 0.1 | POLR2A PRDM10 EBF1 ZBTB26 EZH2 | CHL1 RNU6-1194P | |
| GH03I000196 | Promoter | 0.7 | EPDnew | 550.8 | 0.0 | -19 | 0.1 | PRDM10 EBF1 EZH2 | CHL1 CHL1-AS2 | |
| GH03I000203 | Promoter | 0.5 | EPDnew | 550.4 | +7.2 | 7221 | 0.1 | CHL1 RNU6-1194P | ||
| GH03I000319 | Promoter | 0.5 | EPDnew | 550.1 | +123.1 | 123145 | 0.1 | CHL1 RPS8P6 CHL1-AS1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around CHL1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for CHL1 Gene
Genomic Locations for CHL1 Gene
- chr3:196,596-409,417
- (GRCh38/hg38)
- Size:
- 212,822 bases
- Orientation:
- Plus strand
- chr3:238,279-451,098
- (GRCh37/hg19)
Genomic View for CHL1 Gene
Genes around CHL1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 3p26.3 by Ensembl
- 3p26.3 by Entrez Gene
- 3p26.3 by HGNC
CHL1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CHL1 Gene
Proteins for CHL1 Gene
-
Protein details for CHL1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- O00533-NCHL1_HUMAN
- Recommended name:
- Neural cell adhesion molecule L1-like protein
- Protein Accession:
- O00533
- B7ZL03
- Q2M3G2
- Q59FY0
Protein attributes for CHL1 Gene
- Size:
- 1208 amino acids
- Molecular mass:
- 135071 Da
- Quaternary structure:
-
- May interact with L1CAM. May interact with ITGB1/ITGA1 heterodimer and ITGB1/ITGA2 heterodimer as well as with ANK3 (By similarity).
- SequenceCaution:
-
- Sequence=BAD92566.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};
Protein Expression for CHL1 Gene
Post-translational modifications for CHL1 Gene
- Cleavage by metalloprotease ADAM8 in the extracellular part generates 2 soluble forms (125 kDa and 165 kDa) in vitro and is inhibited by metalloprotease inhibitors.
- N-glycosylated. Contains N-linked oligosaccharides with a sulfated carbohydrate structure type HNK-1 (SO4-3-GlcUABeta1,3GalBeta1,4GlcNAc) (By similarity).
- O-glycosylated.
- Glycosylation at Asn299, Asn476, Asn482, Asn562, posLast=580580, Asn767, posLast=822822, posLast=945945, Asn1026, and Asn231
Other Protein References for CHL1 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- R&D Systems Antibodies for CHL1 (CHL-1/L1CAM-2)
- Novus Biologicals Antibodies for CHL1
-
Abcam antibodies for CHL1
-
Cloud-Clone Corp. Antibodies for CHL1
- Invitrogen Antibodies for CHL1
- Search GeneTex for Antibodies for CHL1
-
Santa Cruz Biotechnology (SCBT) Antibodies for CHL1
- Sino Biological Antibodies for CHL1
Protein Products
- R&D Systems Proteins and Enzymes for CHL1 (CHL-1/L1CAM-2)
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CHL1
- Origene Custom Protein Services for CHL1
- Novus Biologicals proteins for CHL1
- Sino Biological Cell Lysates for CHL1
- Sino Biological Recombinant Proteins for CHL1
-
Cloud-Clone Corp. Proteins for CHL1
- Search GeneTex for Proteins for CHL1
-
Abcam proteins for CHL1
Assay Products
- R&D Systems Proteome Profiler Antibody Arrays and other biochemical assays for CHL1 (CHL-1/L1CAM-2)
-
Cloud-Clone Corp. Assay Kits for CHL1
- antibodies-online: Search results for 10 available CHL1 Elisa Kits ranked by validation data
- Compare Top CHL1 Elisa Kits
-
Quality Products:
- Sino Biological Assays for CHL1
No data available for DME Specific Peptides for CHL1 Gene
Domains & Families for CHL1 Gene
Gene Families for CHL1 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Plasma proteins
- Predicted membrane proteins
- Predicted secreted proteins
Protein Domains for CHL1 Gene
Suggested Antigen Peptide Sequences for CHL1 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
O00533UniProtKB/Swiss-Prot:
NCHL1_HUMAN :- The FIG[AQ]Y motif seems to be an ankyrin recruitment region.
- Belongs to the immunoglobulin superfamily. L1/neurofascin/NgCAM family.
- Domain:
-
- The FIG[AQ]Y motif seems to be an ankyrin recruitment region.
- The DGEA motif seems to be a recognition site for integrin.
- Family:
-
- Belongs to the immunoglobulin superfamily. L1/neurofascin/NgCAM family.
Function for CHL1 Gene
Molecular function for CHL1 Gene
- GENATLAS Biochemistry:
- cell adhesion L1-like,highly expressed in brain,heart,prostate,ovary,small intestine and colon,immunoglobulin superfamily
- UniProtKB/Swiss-Prot Function:
- Extracellular matrix and cell adhesion protein that plays a role in nervous system development and in synaptic plasticity. Both soluble and membranous forms promote neurite outgrowth of cerebellar and hippocampal neurons and suppress neuronal cell death. Plays a role in neuronal positioning of pyramidal neurons and in regulation of both the number of interneurons and the efficacy of GABAergic synapses. May play a role in regulating cell migration in nerve regeneration and cortical development. Potentiates integrin-dependent cell migration towards extracellular matrix proteins. Recruits ANK3 to the plasma membrane (By similarity).
Phenotypes From GWAS Catalog for CHL1 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0002020 | protease binding | IEA | -- |
Phenotypes for CHL1 Gene
- MGI mutant phenotypes for CHL1:
- inferred from 2 alleles
- GenomeRNAi human phenotypes for CHL1:
Animal Models for CHL1 Gene
- MGI Knock Outs for CHL1:
-
- Chl1 tm1Mtg
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for CHL1
-
-
ViGene Biosciences lentiviral particle packaged cDNA for CHL1 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for CHL1 gene
- Search ViGene Biosciences for CHL1
CRISPR Products
-
OriGene CRISPR knockouts for CHL1
- genomics-online: gRNA clones - Search results for 60 available CHL1 gene related products
- Overview of 60 available CHL1 gene related products
-
Recommended
- pPB-C-His
- pPB-His-MBP
- pPB-N-His
- pPB-His-GST
- pGFP-V-RS
- pRFP-C-RS
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-C-mGFP
- pLenti-C-Myc-DDK
- pCMV6-XL4
- pCMV6-Entry
- pPB-C-His
- pPB-His-MBP
- pPB-N-His
- pPB-His-GST
- pGFP-V-RS
- pRFP-C-RS
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-C-mGFP
- pLenti-C-Myc-DDK
- pCMV6-XL4
- pCMV6-Entry
- Applied Biological Materials CRISPR for CHL1
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for CHL1
- GenScript: Design CRISPR guide RNA sequences for CHL1
miRNA for CHL1 Gene
- miRTarBase miRNAs that target CHL1
miRNA Products
- Search ViGene Biosciences for CHL1
Inhibitory RNA Products
- Origene RNAi and shrna products in human, mouse, rat for CHL1
- Browse OriGene Inhibitory RNA Products For CHL1
- genomics-online: shRNA clones - Search results for 60 available CHL1 gene related products
- Overview of 60 available CHL1 gene related products
-
Recommended
- pPB-C-His
- pPB-His-MBP
- pPB-N-His
- pPB-His-GST
- pGFP-V-RS
- pRFP-C-RS
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-C-mGFP
- pLenti-C-Myc-DDK
- pCMV6-XL4
- pCMV6-Entry
- pPB-C-His
- pPB-His-MBP
- pPB-N-His
- pPB-His-GST
- pGFP-V-RS
- pRFP-C-RS
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-C-mGFP
- pLenti-C-Myc-DDK
- pCMV6-XL4
- pCMV6-Entry
-
ViGene Biosciences ready-to-package AAV shRNAs for CHL1 gene
Clone Products
- Sino Biological Human cDNA Clone for CHL1
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for CHL1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CHL1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- genomics-online: cdna clones - Search results for 60 available CHL1 gene related products
- Overview of 60 available CHL1 gene related products
-
Recommended
- pPB-C-His
- pPB-His-MBP
- pPB-N-His
- pPB-His-GST
- pGFP-V-RS
- pRFP-C-RS
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-C-mGFP
- pLenti-C-Myc-DDK
- pCMV6-XL4
- pCMV6-Entry
- pPB-C-His
- pPB-His-MBP
- pPB-N-His
- pPB-His-GST
- pGFP-V-RS
- pRFP-C-RS
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-C-mGFP
- pLenti-C-Myc-DDK
- pCMV6-XL4
- pCMV6-Entry
- orf clones - Search results for 60 available CHL1 gene related products
- Overview of 60 available CHL1 gene related products
-
Recommended
- pPB-C-His
- pPB-His-MBP
- pPB-N-His
- pPB-His-GST
- pGFP-V-RS
- pRFP-C-RS
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-C-mGFP
- pLenti-C-Myc-DDK
- pCMV6-XL4
- pCMV6-Entry
- pPB-C-His
- pPB-His-MBP
- pPB-N-His
- pPB-His-GST
- pGFP-V-RS
- pRFP-C-RS
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-C-mGFP
- pLenti-C-Myc-DDK
- pCMV6-XL4
- pCMV6-Entry
- Applied Biological Materials Clones for CHL1
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
- R&D Systems cDNA Clones for CHL1 (CHL-1/L1CAM-2)
Cell Line Products
-
Horizon Cell Lines for CHL1
-
ViGene Biosciences adenoviral particle packaged cDNA for CHL1 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for CHL1 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for CHL1 gene
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CHL1 Gene
Localization for CHL1 Gene
Subcellular locations from UniProtKB/Swiss-Prot for CHL1 Gene
- Cell membrane; Single-pass type I membrane protein. Note=Soluble forms produced by cleavage/shedding also exist. {ECO:0000250}.
- Processed neural cell adhesion molecule L1-like protein: Secreted, extracellular space, extracellular matrix.
| Compartment | Confidence |
|---|---|
| plasma membrane | 5 |
| extracellular | 5 |
| cytoskeleton | 3 |
| nucleus | 2 |
| endoplasmic reticulum | 2 |
| peroxisome | 1 |
| cytosol | 1 |
| lysosome | 1 |
| golgi apparatus | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005576 | extracellular region | IEA | -- |
| GO:0005578 | proteinaceous extracellular matrix | IEA | -- |
| GO:0005886 | plasma membrane | IEA | -- |
| GO:0016020 | membrane | IEA | -- |
| GO:0016021 | integral component of membrane | IEA | -- |
No data available for Subcellular locations from the Human Protein Atlas (HPA) for CHL1 Gene
Pathways & Interactions for CHL1 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Developmental Biology |
.51
|
|
| 2 | L1CAM interactions | ||
Pathways by source for CHL1 Gene
4 Reactome pathways for CHL1 Gene
Interacting Proteins for CHL1 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0001764 | neuron migration | IEA | -- |
| GO:0007155 | cell adhesion | TAS,IEA | -- |
| GO:0007165 | signal transduction | TAS | 9799093 |
| GO:0007275 | multicellular organism development | IEA | -- |
| GO:0007399 | nervous system development | IEA | -- |
No data available for SIGNOR curated interactions for CHL1 Gene
Transcripts for CHL1 Gene
mRNA/cDNA for CHL1 Gene
- (18) REFSEQ mRNAs :
- (10) Additional mRNA sequences :
- (87) Selected AceView cDNA sequences:
- (16) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for CHL1 Gene
CRISPR Products
-
OriGene CRISPR knockouts for CHL1
- genomics-online: gRNA clones - Search results for 60 available CHL1 gene related products
- Overview of 60 available CHL1 gene related products
-
Recommended
- pPB-C-His
- pPB-His-MBP
- pPB-N-His
- pPB-His-GST
- pGFP-V-RS
- pRFP-C-RS
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-C-mGFP
- pLenti-C-Myc-DDK
- pCMV6-XL4
- pCMV6-Entry
- pPB-C-His
- pPB-His-MBP
- pPB-N-His
- pPB-His-GST
- pGFP-V-RS
- pRFP-C-RS
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-C-mGFP
- pLenti-C-Myc-DDK
- pCMV6-XL4
- pCMV6-Entry
- Applied Biological Materials CRISPR for CHL1
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for CHL1
- GenScript: Design CRISPR guide RNA sequences for CHL1
miRNA Products
- Search ViGene Biosciences for CHL1
Inhibitory RNA Products
- Origene RNAi and shrna products in human, mouse, rat for CHL1
- Browse OriGene Inhibitory RNA Products For CHL1
- genomics-online: shRNA clones - Search results for 60 available CHL1 gene related products
- Overview of 60 available CHL1 gene related products
-
Recommended
- pPB-C-His
- pPB-His-MBP
- pPB-N-His
- pPB-His-GST
- pGFP-V-RS
- pRFP-C-RS
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-C-mGFP
- pLenti-C-Myc-DDK
- pCMV6-XL4
- pCMV6-Entry
- pPB-C-His
- pPB-His-MBP
- pPB-N-His
- pPB-His-GST
- pGFP-V-RS
- pRFP-C-RS
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-C-mGFP
- pLenti-C-Myc-DDK
- pCMV6-XL4
- pCMV6-Entry
-
ViGene Biosciences ready-to-package AAV shRNAs for CHL1 gene
Clone Products
- Sino Biological Human cDNA Clone for CHL1
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for CHL1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CHL1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- genomics-online: cdna clones - Search results for 60 available CHL1 gene related products
- Overview of 60 available CHL1 gene related products
-
Recommended
- pPB-C-His
- pPB-His-MBP
- pPB-N-His
- pPB-His-GST
- pGFP-V-RS
- pRFP-C-RS
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-C-mGFP
- pLenti-C-Myc-DDK
- pCMV6-XL4
- pCMV6-Entry
- pPB-C-His
- pPB-His-MBP
- pPB-N-His
- pPB-His-GST
- pGFP-V-RS
- pRFP-C-RS
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-C-mGFP
- pLenti-C-Myc-DDK
- pCMV6-XL4
- pCMV6-Entry
- orf clones - Search results for 60 available CHL1 gene related products
- Overview of 60 available CHL1 gene related products
-
Recommended
- pPB-C-His
- pPB-His-MBP
- pPB-N-His
- pPB-His-GST
- pGFP-V-RS
- pRFP-C-RS
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-C-mGFP
- pLenti-C-Myc-DDK
- pCMV6-XL4
- pCMV6-Entry
- pPB-C-His
- pPB-His-MBP
- pPB-N-His
- pPB-His-GST
- pGFP-V-RS
- pRFP-C-RS
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-C-mGFP
- pLenti-C-Myc-DDK
- pCMV6-XL4
- pCMV6-Entry
- Applied Biological Materials Clones for CHL1
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
- R&D Systems cDNA Clones for CHL1 (CHL-1/L1CAM-2)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | · | 1e | ^ | 2a | · | 2b | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7a | · | 7b | · | 7c | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17 | ^ | 18 | ^ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||
| SP2: | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||||
| SP3: | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||||||
| SP4: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP5: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP6: | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||||
| SP7: | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||||
| SP8: | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||||
| SP9: | - | |||||||||||||||||||||||||||||||||||||||||||||||||||
| SP10: |
| ExUns: | 19 | ^ | 20a | · | 20b | ^ | 21 | ^ | 22 | ^ | 23 | ^ | 24 | ^ | 25 | ^ | 26 | ^ | 27 | ^ | 28a | · | 28b | ^ | 29 | ^ | 30 | ^ | 31 | ^ | 32a | · | 32b |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | ||||||||||||||||||||||||||||||||
| SP2: | - | ||||||||||||||||||||||||||||||||
| SP3: | - | ||||||||||||||||||||||||||||||||
| SP4: | |||||||||||||||||||||||||||||||||
| SP5: | - | ||||||||||||||||||||||||||||||||
| SP6: | |||||||||||||||||||||||||||||||||
| SP7: | |||||||||||||||||||||||||||||||||
| SP8: | |||||||||||||||||||||||||||||||||
| SP9: | |||||||||||||||||||||||||||||||||
| SP10: |
Expression for CHL1 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Brain (Nervous System)
- Bergmann Glia Purkinje Cell Layer
- Endothelial Cells Blood Brain Barrier
- Cerebral Cortex
- Lateral Ventricle
- Caudal astrospheres(Krencik R et. al. 2011)
-
Glial Cells
- Bergmann Glia Purkinje Cell Layer
- Caudal astrospheres(Krencik R et. al. 2011)
- NULL (Uncategorized)
-
Kidney (Urinary System)
- Metanephric Mesenchyme Cells Metanephric Mesenchyme
-
Blood (Hematopoietic System)
- Natural Killer Cells Peripheral Blood
-
Peripheral Nervous System (Nervous System)
- Schwann Precursor Cells Peripheral Nerve Domain
-
Endothelium (Cardiovascular System)
- Endothelial Cells Blood Brain Barrier
- Neural Tube (Nervous System)
- Astrocytes (Nervous System)
- Oligodendrocytes (Nervous System)
- Spinal Cord (Nervous System)
-
Testis (Reproductive System)
mRNA differential expression in normal tissues according to GTEx for CHL1 Gene
This gene is overexpressed in Brain - Frontal Cortex (BA9) (x5.4) and Brain - Anterior cingulate cortex (BA24) (x5.0).
This gene is overexpressed in Cerebrospinal fluid (34.6) and Serum (16.9).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for CHL1 Gene
NURSA nuclear receptor signaling pathways regulating expression of CHL1 Gene:
CHL1SOURCE GeneReport for Unigene cluster for CHL1 Gene:
Hs.148909mRNA Expression by UniProt/SwissProt for CHL1 Gene:
O00533-NCHL1_HUMAN
Tissue specificity:
Expressed in the fetal and adult brain as well as in Schwann cell culture. Also detected in adult peripheral tissues.
Evidence on tissue expression from TISSUES for CHL1 Gene
- Nervous system(5)
- Bone marrow(4.4)
- Muscle(2.6)
- Eye(2.5)
- Blood(2.2)
- Skin(2.2)
- Kidney(2.1)
- Lung(2.1)
Phenotype-based relationships between genes and organs from Gene ORGANizer for CHL1 Gene
Germ Layers:
- ectoderm
- mesoderm
Systems:
- cardiovascular
- digestive
- integumentary
- nervous
- reproductive
- skeletal muscle
- skeleton
Organs:
Head and neck:
- brain
- cheek
- chin
- ear
- eye
- eyelid
- face
- forehead
- head
- jaw
- lip
- mandible
- maxilla
- mouth
- nose
- outer ear
- skull
Thorax:
- heart
- heart valve
Pelvis:
- pelvis
- testicle
Limb:
- digit
- finger
- foot
- hand
- lower limb
- toe
- upper limb
General:
- hair
- skin
- spinal cord
Primer Products
-
OriGene qPCR primer pairs for CHL1
- genomics-online: primer clones - Search results for 60 available CHL1 gene related products
- Overview of 60 available CHL1 gene related products
-
Recommended
- pPB-C-His
- pPB-His-MBP
- pPB-N-His
- pPB-His-GST
- pGFP-V-RS
- pRFP-C-RS
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-C-mGFP
- pLenti-C-Myc-DDK
- pCMV6-XL4
- pCMV6-Entry
- pPB-C-His
- pPB-His-MBP
- pPB-N-His
- pPB-His-GST
- pGFP-V-RS
- pRFP-C-RS
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-C-mGFP
- pLenti-C-Myc-DDK
- pCMV6-XL4
- pCMV6-Entry
Orthologs for CHL1 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | CHL1 33 34 |
|
||
| dog (Canis familiaris) |
Mammalia | CHL1 33 34 |
|
||
| cow (Bos Taurus) |
Mammalia | CHL1 33 34 |
|
||
| mouse (Mus musculus) |
Mammalia | Chl1 33 16 34 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Chl1 33 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | CHL1 34 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | CHL1 34 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | CHL1 33 34 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | CHL1 34 |
|
OneToOne | |
| zebrafish (Danio rerio) |
Actinopterygii | chl1a 33 34 |
|
||
| CHL1 (1 of 2) 34 |
|
OneToMany | |||
| fruit fly (Drosophila melanogaster) |
Insecta | Nrg 35 |
|
|
|
| worm (Caenorhabditis elegans) |
Secernentea | Y54G2A.25 35 |
|
|
|
| C33F10.5a 35 |
|
|
|||
| C33F10.5b 35 |
|
|
- Species where no ortholog for CHL1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
Paralogs for CHL1 Gene
(8) SIMAP similar genes for CHL1 Gene using alignment to 7 proteins:
Variants for CHL1 Gene
| SNP ID | Clin | Chr 03 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| VAR_035505 | A colorectal cancer sample | p.Leu411Ile | |||
| rs199822757 | likely-benign, not specified | 360,359(+) | T/C | coding_sequence_variant, genic_downstream_transcript_variant, missense_variant | |
| rs1000007793 | -- | 279,067(+) | G/A/T | genic_downstream_transcript_variant, genic_upstream_transcript_variant, intron_variant | |
| rs1000021135 | -- | 222,544(+) | G/A | genic_upstream_transcript_variant, intron_variant | |
| rs1000025436 | -- | 302,471(+) | T/C | genic_downstream_transcript_variant, genic_upstream_transcript_variant, intron_variant |
Residual Variation Intolerance Score:
23.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
6.50;
77.59% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for CHL1 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CHL1 Gene
Disorders for CHL1 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| large cell carcinoma with rhabdoid phenotype |
|
|
| myositis fibrosa |
|
|
| adult mesoblastic nephroma |
|
|
| null-cell leukemia |
|
|
| gastric small cell carcinoma |
|
|
Search CHL1 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for CHL1
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No data available for UniProtKB/Swiss-Prot and Genatlas for CHL1 Gene
Publications for CHL1 Gene
- Case-control association study of the close homologue of L1 (CHL1) gene and schizophrenia in the Chinese population. (PMID: 15653271) Chen QY … He L (Schizophrenia research 2005) 3 22 44 58
- An association between a missense polymorphism in the close homologue of L1 (CHL1, CALL) gene and schizophrenia. (PMID: 11986985) Sakurai K … Arinami T (Molecular psychiatry 2002) 3 22 44 58
- In silico-initiated cloning and molecular characterization of a novel human member of the L1 gene family of neural cell adhesion molecules. (PMID: 9799093) Wei MH … Lerman MI (Human genetics 1998) 2 3 4 58
- GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease. (PMID: 21658281) Aouizerat BE … Tseng ZH (BMC cardiovascular disorders 2011) 3 44 58
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 44 58
Products for CHL1 Gene
- R&D Systems Antibodies for CHL1 (CHL-1/L1CAM-2)
- R&D Systems Proteins and Enzymes for CHL1 (CHL-1/L1CAM-2)
- R&D Systems Proteome Profiler Antibody Arrays and other biochemical assays for CHL1 (CHL-1/L1CAM-2)
- R&D Systems cDNA Clones for CHL1 (CHL-1/L1CAM-2)
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- Abcam proteins for CHL1
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- Search Knockout (KO) Validated Antibodies
- Browse Monoclonal Antibodies
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- Cloud-Clone Corp. Antibodies for CHL1
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- Browse Knockouts at Cloud-Clone Corp.
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- Cloud-Clone Corp. disease models service
- Browse cDNA clones at Cloud-Clone Corp.
- Browse primers at Cloud-Clone Corp.
- Cloud-Clone Corp. primary cells service
- Invitrogen Antibodies for CHL1
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- Cyagen custom Knockout/knockin (KOKI) mouse models for CHL1
- VectorBuilder custom plasmid, inducible vectors for CHL1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CHL1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- antibodies-online: Search results for 17 available CHL1 Antibodies ranked by validation data
- Compare Top CHL1 Antibodies
- antibodies-online: Search results for 10 available CHL1 Elisa Kits ranked by validation data
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- antibodies-online: Search results for 11 available CHL1 Proteins ranked by validation data
- Compare Top CHL1 Proteins
- Search GeneTex for Antibodies for CHL1
- Search GeneTex for Proteins for CHL1
- ViGene Biosciences adenoviral particle packaged cDNA for CHL1 gene
- ViGene Biosciences lentiviral particle packaged cDNA for CHL1 gene
- ViGene Biosciences ready-to-package AAV shRNAs for CHL1 gene
- Search ViGene Biosciences for CHL1
- Santa Cruz Biotechnology (SCBT) Antibodies for CHL1
- Search Santa Cruz Biotechnology (SCBT) for CHL1 siRNA/shRNA
- Santa Cruz Biotechnology (SCBT) CRISPR for CHL1
- Horizon Cell Lines for CHL1
- genomics-online: cdna clones - Search results for 60 available CHL1 gene related products
- Overview of 60 available CHL1 gene related products
- Recommended
- pCMV6-Entry
- pCMV6-XL4
- pLenti-C-Myc-DDK
- pLenti-C-mGFP
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pRFP-C-RS
- pGFP-V-RS
- pPB-His-GST
- pPB-N-His
- pPB-His-MBP
- pPB-C-His
- pCMV6-Entry
- pCMV6-XL4
- pLenti-C-Myc-DDK
- pLenti-C-mGFP
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pRFP-C-RS
- pGFP-V-RS
- pPB-His-GST
- pPB-N-His
- pPB-His-MBP
- pPB-C-His
- orf clones - Search results for 60 available CHL1 gene related products
- Overview of 60 available CHL1 gene related products
- Recommended
- pCMV6-Entry
- pCMV6-XL4
- pLenti-C-Myc-DDK
- pLenti-C-mGFP
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pRFP-C-RS
- pGFP-V-RS
- pPB-His-GST
- pPB-N-His
- pPB-His-MBP
- pPB-C-His
- pCMV6-Entry
- pCMV6-XL4
- pLenti-C-Myc-DDK
- pLenti-C-mGFP
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pRFP-C-RS
- pGFP-V-RS
- pPB-His-GST
- pPB-N-His
- pPB-His-MBP
- pPB-C-His
- genomics-online: gRNA clones - Search results for 60 available CHL1 gene related products
- Overview of 60 available CHL1 gene related products
- Recommended
- pCMV6-Entry
- pCMV6-XL4
- pLenti-C-Myc-DDK
- pLenti-C-mGFP
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pRFP-C-RS
- pGFP-V-RS
- pPB-His-GST
- pPB-N-His
- pPB-His-MBP
- pPB-C-His
- pCMV6-Entry
- pCMV6-XL4
- pLenti-C-Myc-DDK
- pLenti-C-mGFP
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pRFP-C-RS
- pGFP-V-RS
- pPB-His-GST
- pPB-N-His
- pPB-His-MBP
- pPB-C-His
- genomics-online: primer clones - Search results for 60 available CHL1 gene related products
- Overview of 60 available CHL1 gene related products
- Recommended
- pCMV6-Entry
- pCMV6-XL4
- pLenti-C-Myc-DDK
- pLenti-C-mGFP
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pRFP-C-RS
- pGFP-V-RS
- pPB-His-GST
- pPB-N-His
- pPB-His-MBP
- pPB-C-His
- pCMV6-Entry
- pCMV6-XL4
- pLenti-C-Myc-DDK
- pLenti-C-mGFP
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pRFP-C-RS
- pGFP-V-RS
- pPB-His-GST
- pPB-N-His
- pPB-His-MBP
- pPB-C-His
- genomics-online: shRNA clones - Search results for 60 available CHL1 gene related products
- Overview of 60 available CHL1 gene related products
- Recommended
- pCMV6-Entry
- pCMV6-XL4
- pLenti-C-Myc-DDK
- pLenti-C-mGFP
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pRFP-C-RS
- pGFP-V-RS
- pPB-His-GST
- pPB-N-His
- pPB-His-MBP
- pPB-C-His
- pCMV6-Entry
- pCMV6-XL4
- pLenti-C-Myc-DDK
- pLenti-C-mGFP
- pLenti-U6-sgRNA-PGK-Neo
- pLenti-U6-sgRNA-SFFV-Cas9-2A-Puro
- pRFP-C-RS
- pGFP-V-RS
- pPB-His-GST
- pPB-N-His
- pPB-His-MBP
- pPB-C-His
Sources for CHL1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
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- (114) diseasecard
- (115) NIH Rare Diseases
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- (120) Genetics Home Reference
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- (139) VectorBuilder
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- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew