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Aliases for CHKB-CPT1B Gene

Subcategory (RNA class) for CHKB-CPT1B Gene


Quality Score for this RNA gene is


Aliases for CHKB-CPT1B Gene

  • CHKB-CPT1B Readthrough (NMD Candidate) 2 3
  • Choline Kinase-Like, Carnitine Palmitoyltransferase 1B (Muscle) Transcription Unit 3
  • CHKB-CPT1B Readthrough (Non-Protein Coding) 3
  • CHKL-CPT1B 3

External Ids for CHKB-CPT1B Gene

Previous GeneCards Identifiers for CHKB-CPT1B Gene

  • GC22M049297
  • GC22M049355
  • GC22M051009
  • GC22M051010

Summaries for CHKB-CPT1B Gene

Entrez Gene Summary for CHKB-CPT1B Gene

  • The genes CHKB and CPT1B are adjacent on chromosome 22 and read-through transcripts are expressed that include exons from both loci. The read-through transcripts are candidates for nonsense-mediated mRNA decay (NMD) and are unlikely to express proteins. [provided by RefSeq, Jun 2009]

GeneCards Summary for CHKB-CPT1B Gene

CHKB-CPT1B (CHKB-CPT1B Readthrough (NMD Candidate)) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with CHKB-CPT1B include narcolepsy. An important paralog of this gene is CHKB.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHKB-CPT1B Gene

Genomics for CHKB-CPT1B Gene

Genomic Location for CHKB-CPT1B Gene

50,568,861 bp from pter
50,582,999 bp from pter
14,139 bases
Minus strand

Genomic View for CHKB-CPT1B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CHKB-CPT1B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHKB-CPT1B Gene

No data available for Regulatory Elements for CHKB-CPT1B Gene

Proteins for CHKB-CPT1B Gene

  • Protein details for CHKB-CPT1B Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    Protein CHKB-CPT1B
    Protein Accession:
    Secondary Accessions:
    • J3KQX7

    Protein attributes for CHKB-CPT1B Gene

    60 amino acids
    Molecular mass:
    7003 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CHKB-CPT1B Gene

Proteomics data for CHKB-CPT1B Gene at MOPED

Post-translational modifications for CHKB-CPT1B Gene

No Post-translational modifications

Other Protein References for CHKB-CPT1B Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for CHKB-CPT1B Gene

Domains for CHKB-CPT1B Gene

Protein Domains for CHKB-CPT1B Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CHKB-CPT1B: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CHKB-CPT1B Gene

Function for CHKB-CPT1B Gene

Gene Ontology (GO) - Molecular Function for CHKB-CPT1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016772 transferase activity, transferring phosphorus-containing groups --
genes like me logo Genes that share ontologies with CHKB-CPT1B: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CHKB-CPT1B Gene

Localization for CHKB-CPT1B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CHKB-CPT1B Gene

Pathways for CHKB-CPT1B Gene

SuperPathways for CHKB-CPT1B Gene

No Data Available

Interacting Proteins for CHKB-CPT1B Gene

Gene Ontology (GO) - Biological Process for CHKB-CPT1B Gene


No data available for Pathways by source for CHKB-CPT1B Gene

Transcripts for CHKB-CPT1B Gene


(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate CHKB-CPT1B
    • Block miRNA regulation of CHKB-CPT1B using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for CHKB-CPT1B

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for CHKB-CPT1B Gene

    No ASD Table

    Relevant External Links for CHKB-CPT1B Gene

    GeneLoc Exon Structure for
    ECgene alternative splicing isoforms for

    Expression for CHKB-CPT1B Gene

    mRNA expression in normal human tissues for CHKB-CPT1B Gene

    genes like me logo Genes that share expressions with CHKB-CPT1B: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for CHKB-CPT1B Gene

    Orthologs for CHKB-CPT1B Gene

    This gene was present in the common ancestor of animals and fungi.

    Orthologs for CHKB-CPT1B Gene

    Organism Taxonomy Gene Similarity Type Details
    (Mus musculus)
    Mammalia BC090627 16
    Chkb 36
    • 13 (a)
    (Bos Taurus)
    Mammalia CHKB 36
    • 13 (a)
    (Canis familiaris)
    Mammalia -- 36
    • 20 (a)
    (Monodelphis domestica)
    Mammalia -- 36
    • 10 (a)
    (Ornithorhynchus anatinus)
    Mammalia -- 36
    • 19 (a)
    (Pan troglodytes)
    Mammalia CHKB 36
    • 15 (a)
    (Anolis carolinensis)
    Reptilia -- 36
    (Danio rerio)
    Actinopterygii chkb 36
    • 8 (a)
    fruit fly
    (Drosophila melanogaster)
    Insecta CG2201 36
    • 3 (a)
    (Caenorhabditis elegans)
    Secernentea cka-1 36
    • 4 (a)
    cka-2 36
    • 6 (a)
    ckb-1 36
    • 3 (a)
    ckb-2 36
    • 3 (a)
    ckb-3 36
    • 3 (a)
    ckb-4 36
    • 4 (a)
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes CKI1 36
    • 2 (a)
    EKI1 36
    • 2 (a)
    sea squirt
    (Ciona savignyi)
    Ascidiacea -- 36
    • 7 (a)
    Species with no ortholog for CHKB-CPT1B:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)

    Evolution for CHKB-CPT1B Gene

    Gene Tree for CHKB-CPT1B (if available)
    Gene Tree for CHKB-CPT1B (if available)

    Paralogs for CHKB-CPT1B Gene

    Paralogs for CHKB-CPT1B Gene

    Selected SIMAP similar genes for CHKB-CPT1B Gene using alignment to 1 proteins:

    genes like me logo Genes that share paralogs with CHKB-CPT1B: view

    Variants for CHKB-CPT1B Gene

    Structural Variations from Database of Genomic Variants (DGV) for CHKB-CPT1B Gene

    Variant ID Type Subtype PubMed ID
    nsv915495 CNV Loss 21882294
    nsv914525 CNV Loss 21882294
    dgv5062n71 CNV Loss 21882294
    nsv471224 CNV Loss 18288195
    nsv914542 CNV Loss 21882294
    nsv914543 CNV Loss 21882294
    nsv834239 CNV Loss 17160897
    dgv1422e1 CNV Complex 17122850
    dgv5066n71 CNV Loss 21882294
    nsv829340 CNV Gain 20364138
    dgv5067n71 CNV Loss 21882294
    nsv914559 CNV Loss 21882294
    esv33185 CNV Loss 17666407
    nsv914561 CNV Loss 21882294
    dgv5068n71 CNV Loss 21882294

    Relevant External Links for CHKB-CPT1B Gene

    HapMap Linkage Disequilibrium report

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for CHKB-CPT1B Gene

    Disorders for CHKB-CPT1B Gene

    MalaCards: The human disease database

    MalaCards: The human disease database.

    Search for CHKB-CPT1B Gene in MalaCards »

    (1) Diseases for CHKB-CPT1B Gene including...

    genes like me logo Genes that share disorders with CHKB-CPT1B: view

    No data available for OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for CHKB-CPT1B Gene

    Publications for CHKB-CPT1B Gene

    1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
    2. Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. (PMID: 10493829) Loftus B.J. … Adams M.D. (Genomics 1999) 3
    3. Novel expression of equivocal messages containing both regions of choline/ethanolamine kinase and muscle type carnitine palmitoyltransferase I. (PMID: 10918069) Yamazaki N. … Terada H. (J. Biol. Chem. 2000) 3
    4. Identification of novel transcribed sequences on human chromosome 22 by expressed sequence tag mapping. (PMID: 11258795) Hirosawa M. … Ohara O. (DNA Res. 2001) 3
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

    Products for CHKB-CPT1B Gene

    Sources for CHKB-CPT1B Gene

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