Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CHKB-AS1 Gene

Subcategory (RNA class) for CHKB-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for CHKB-AS1 Gene

  • CHKB Antisense RNA 1 (Head To Head) 2 3 5
  • CTA-384D8.20 3

External Ids for CHKB-AS1 Gene

Previous GeneCards Identifiers for CHKB-AS1 Gene

  • GC22P051025

Summaries for CHKB-AS1 Gene

GeneCards Summary for CHKB-AS1 Gene

CHKB-AS1 (CHKB Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CHKB-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHKB-AS1 Gene

Genomics for CHKB-AS1 Gene

Regulatory Elements for CHKB-AS1 Gene

Enhancers for CHKB-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22H050670 1.3 FANTOM5 ENCODE dbSUPER 11.5 +89.3 89335 3.5 TAF1 MAX GLIS2 EGR1 POLR2A ZNF600 KLF8 EZH2 ZNF202 RFX1 BRD1 CPT1B ZBED4 ENSG00000272836 LOC105373095 SHANK3 LMF2 NCAPH2 TUBGCP6 CHKB
GH22H050584 0.2 ENCODE 6.6 +1.5 1538 0 CHKB-AS1 ENSG00000272940
GH22H050588 0.3 FANTOM5 0.4 +5.2 5201 0.4 DENND6B MAPK8IP2 MOV10L1 RABL2B CHKB-AS1 ENSG00000272940
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CHKB-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CHKB-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000147746 -226 1601 HDGF PKNOX1 ATF1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF121 ELK1

Genomic Locations for CHKB-AS1 Gene

Genomic Locations for CHKB-AS1 Gene
12,256 bases
Plus strand

Genomic View for CHKB-AS1 Gene

Genes around CHKB-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHKB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHKB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHKB-AS1 Gene

Proteins for CHKB-AS1 Gene

Post-translational modifications for CHKB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CHKB-AS1 Gene

Domains & Families for CHKB-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CHKB-AS1 Gene

Function for CHKB-AS1 Gene

Phenotypes From GWAS Catalog for CHKB-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CHKB-AS1 Gene

Localization for CHKB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CHKB-AS1 Gene

Pathways & Interactions for CHKB-AS1 Gene

SuperPathways for CHKB-AS1 Gene

No Data Available

Interacting Proteins for CHKB-AS1 Gene

Gene Ontology (GO) - Biological Process for CHKB-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for CHKB-AS1 Gene

Drugs & Compounds for CHKB-AS1 Gene

No Compound Related Data Available

Transcripts for CHKB-AS1 Gene

mRNA/cDNA for CHKB-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CHKB-AS1 Gene

No ASD Table

Relevant External Links for CHKB-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CHKB-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CHKB-AS1 Gene

genes like me logo Genes that share expression patterns with CHKB-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CHKB-AS1 Gene

Orthologs for CHKB-AS1 Gene

Evolution for CHKB-AS1 Gene

Gene Tree for CHKB-AS1 (if available)
Gene Tree for CHKB-AS1 (if available)

No data available for Orthologs for CHKB-AS1 Gene

Paralogs for CHKB-AS1 Gene

No data available for Paralogs for CHKB-AS1 Gene

Variants for CHKB-AS1 Gene

Sequence variations from dbSNP and Humsavar for CHKB-AS1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs387907068 Pathogenic 50,582,666(-) CGCCT(A/C/T)GTCGC nc-transcript-variant, upstream-variant-2KB, reference, missense, stop-gained
rs786205117 Pathogenic 50,581,542(-) CCATT(-/T)GAAAA nc-transcript-variant, upstream-variant-2KB, reference, frameshift-variant
rs146693439 Likely benign 50,581,544(+) TTTCA(A/G)TGGCC nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon
rs114094125 Uncertain significance 50,582,878(+) GCCGG(C/G)CTGGG nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs138205828 Uncertain significance 50,582,633(+) ATTGG(C/T)AGGCT nc-transcript-variant, upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for CHKB-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv834239 CNV loss 17160897
nsv829342 CNV loss 20364138
nsv829340 CNV gain 20364138
nsv589224 CNV loss 21841781
nsv589223 CNV loss 21841781
nsv589222 CNV gain 21841781
nsv1116965 CNV deletion 24896259
nsv1067172 CNV gain 25217958
nsv1059234 CNV gain 25217958
nsv1057656 CNV gain 25217958

Relevant External Links for CHKB-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CHKB-AS1 Gene

Disorders for CHKB-AS1 Gene

Relevant External Links for CHKB-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CHKB-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CHKB-AS1 Gene

Publications for CHKB-AS1 Gene

  1. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins JE … Dunham I (Genome biology 2004) 3 60

Products for CHKB-AS1 Gene

Sources for CHKB-AS1 Gene

Loading form....