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Aliases for CHKB-AS1 Gene

Subcategory (RNA class) for CHKB-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CHKB-AS1 Gene

  • CHKB Antisense RNA 1 (Head To Head) 2 3 5
  • CTA-384D8.20 3

External Ids for CHKB-AS1 Gene

Previous GeneCards Identifiers for CHKB-AS1 Gene

  • GC22P051025

Summaries for CHKB-AS1 Gene

GeneCards Summary for CHKB-AS1 Gene

CHKB-AS1 (CHKB Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHKB-AS1 Gene

Genomics for CHKB-AS1 Gene

Regulatory Elements for CHKB-AS1 Gene

Enhancers for CHKB-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F050670 1.2 FANTOM5 ENCODE 11.5 +89.3 89335 3.5 MAX UBTF GLIS2 POLR2A EGR1 ZNF600 KLF8 ZNF652 EZH2 ZNF202 CPT1B ZBED4 ENSG00000272836 LOC105373095 SHANK3 TUBGCP6 CHKB CHKB-AS1 CHKB-CPT1B ALG12
GH22F050584 0.2 ENCODE 6.6 +1.5 1538 0.0 CHKB-AS1 ENSG00000272940
GH22F050523 0.7 ENCODE 4.5 -53.3 -53322 12.1 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 SCO2 TYMP ENSG00000272821 SYCE3 ENSG00000272836 ALG12 ZBED4 LMF2 ENSG00000272940 RABL2B
GH22F050588 0.3 FANTOM5 0.4 +5.2 5201 0.4 DENND6B MAPK8IP2 MOV10L1 RABL2B CHKB-AS1 ENSG00000272940
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CHKB-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CHKB-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000086258 -126 1801 HDGF ATF1 PKNOX1 ARID4B SIN3A DMAP1 ZNF48 ZNF2 YY1 ZNF121

Genomic Location for CHKB-AS1 Gene

Chromosome:
22
Start:
50,583,026 bp from pter
End:
50,595,281 bp from pter
Size:
12,256 bases
Orientation:
Plus strand

Genomic View for CHKB-AS1 Gene

Genes around CHKB-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHKB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHKB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHKB-AS1 Gene

Proteins for CHKB-AS1 Gene

Post-translational modifications for CHKB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CHKB-AS1 Gene

Domains & Families for CHKB-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CHKB-AS1 Gene

Function for CHKB-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CHKB-AS1 Gene

Localization for CHKB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CHKB-AS1 Gene

Pathways & Interactions for CHKB-AS1 Gene

SuperPathways for CHKB-AS1 Gene

No Data Available

Interacting Proteins for CHKB-AS1 Gene

Gene Ontology (GO) - Biological Process for CHKB-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CHKB-AS1 Gene

Transcripts for CHKB-AS1 Gene

mRNA/cDNA for CHKB-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CHKB-AS1 Gene

No ASD Table

Relevant External Links for CHKB-AS1 Gene

GeneLoc Exon Structure for
CHKB-AS1
ECgene alternative splicing isoforms for
CHKB-AS1

Expression for CHKB-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CHKB-AS1 Gene

genes like me logo Genes that share expression patterns with CHKB-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CHKB-AS1 Gene

Orthologs for CHKB-AS1 Gene

Evolution for CHKB-AS1 Gene

ENSEMBL:
Gene Tree for CHKB-AS1 (if available)
TreeFam:
Gene Tree for CHKB-AS1 (if available)

No data available for Orthologs for CHKB-AS1 Gene

Paralogs for CHKB-AS1 Gene

No data available for Paralogs for CHKB-AS1 Gene

Variants for CHKB-AS1 Gene

Sequence variations from dbSNP and Humsavar for CHKB-AS1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs387907068 Pathogenic 50,582,666(-) CGCCT(A/C)GTCGC nc-transcript-variant, upstream-variant-2KB, reference, stop-gained
rs786205117 Pathogenic 50,581,542(-) CCATT(-/T)GAAAA nc-transcript-variant, upstream-variant-2KB, reference, frameshift-variant
rs146693439 Likely benign 50,581,544(+) TTTCA(A/G)TGGCC nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon
rs864309593 Uncertain significance 50,582,565(-) TTTAC(C/T)CCGTG nc-transcript-variant, upstream-variant-2KB, reference, missense
rs80067609 other 50,582,566(+) ACGGG(A/G)TAAAC nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for CHKB-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1057656 CNV gain 25217958
nsv1059234 CNV gain 25217958
nsv1067172 CNV gain 25217958
nsv1116965 CNV deletion 24896259
nsv589222 CNV gain 21841781
nsv589223 CNV loss 21841781
nsv589224 CNV loss 21841781
nsv829340 CNV gain 20364138
nsv829342 CNV loss 20364138
nsv834239 CNV loss 17160897

Relevant External Links for CHKB-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CHKB-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CHKB-AS1 Gene

Disorders for CHKB-AS1 Gene

Relevant External Links for CHKB-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CHKB-AS1

No disorders were found for CHKB-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CHKB-AS1 Gene

Publications for CHKB-AS1 Gene

  1. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3 64

Products for CHKB-AS1 Gene

Sources for CHKB-AS1 Gene

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