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Aliases for CHERP Gene

Aliases for CHERP Gene

  • Calcium Homeostasis Endoplasmic Reticulum Protein 2 3 5
  • ERPROT 213-21 3 4
  • SCAF6 3 4
  • SR-Related CTD Associated Factor 6 3
  • SR-Related CTD-Associated Factor 6 4
  • Protein With Polyglutamine Repeat 3
  • ERPROT213-21 3
  • DAN16 3
  • DAN26 4
  • SRA1 3

External Ids for CHERP Gene

Previous GeneCards Identifiers for CHERP Gene

  • GC19M017122
  • GC19M017020
  • GC19M016473
  • GC19M016629
  • GC19M016197

Summaries for CHERP Gene

GeneCards Summary for CHERP Gene

CHERP (Calcium Homeostasis Endoplasmic Reticulum Protein) is a Protein Coding gene. Among its related pathways are mRNA Splicing - Major Pathway and Gene Expression. GO annotations related to this gene include nucleic acid binding and RNA binding.

UniProtKB/Swiss-Prot for CHERP Gene

  • Involved in calcium homeostasis, growth and proliferation.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHERP Gene

Genomics for CHERP Gene

Regulatory Elements for CHERP Gene

Enhancers for CHERP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G016593 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.8 -51.9 -51944 2.1 HDAC1 HDGF RELB ETV6 IKZF2 MIER1 REST MIER2 GATAD2B TBX21 C19orf44 SLC35E1 RN7SL146P CHERP ENSG00000141979 MED26 KLF2 GC19M016221 ENSG00000268087
GH19G016568 1.4 ENCODE dbSUPER 12.4 -29.7 -29662 7.6 HDGF PKNOX1 FOXA2 ARNT CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 C19orf44 SMIM7 TMEM38A ENSG00000268743 SIN3B CHERP RN7SL146P ENSG00000268087 ENSG00000141979 ENSG00000269578
GH19G016607 1.4 Ensembl ENCODE dbSUPER 11.8 -65.8 -65825 1.7 HDGF PKNOX1 ARNT INSM2 FEZF1 BMI1 ZNF2 RAD21 ZNF366 ZSCAN5C C19orf44 EPS15L1 MED26 CALR3 SLC35E1 SMIM7 TMEM38A RN7SL146P CHERP CPAMD8
GH19G016611 1.2 Ensembl ENCODE dbSUPER 11.8 -69.5 -69517 1.7 CTCF ZNF654 USF2 CEBPG RAD21 ATF2 FOXA1 GABPA ZFHX2 RAD51 C19orf44 CALR3 SLC35E1 CHERP RN7SL146P TMEM38A SMIM7 EPS15L1 CPAMD8 ENSG00000269044
GH19G016492 1 ENCODE 12.1 +49.6 49609 0.8 FOXA2 MLX ARID4B ZNF48 YY1 FOS SP5 PPARG KAT8 SREBF1 CHERP RN7SL146P CPAMD8 EPS15L1 CALR3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CHERP on UCSC Golden Path with GeneCards custom track

Promoters for CHERP Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000107769 30 2201 HDGF PKNOX1 CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for CHERP Gene

Chromosome:
19
Start:
16,517,889 bp from pter
End:
16,542,530 bp from pter
Size:
24,642 bases
Orientation:
Minus strand

Genomic View for CHERP Gene

Genes around CHERP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHERP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHERP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHERP Gene

Proteins for CHERP Gene

  • Protein details for CHERP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IWX8-CHERP_HUMAN
    Recommended name:
    Calcium homeostasis endoplasmic reticulum protein
    Protein Accession:
    Q8IWX8
    Secondary Accessions:
    • O00302
    • Q4G0Y5
    • Q8WU30
    • Q99492

    Protein attributes for CHERP Gene

    Size:
    916 amino acids
    Molecular mass:
    103702 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAB53327.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH21294.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAA69591.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=CAA69591.1; Type=Frameshift; Positions=450; Evidence={ECO:0000305};

neXtProt entry for CHERP Gene

Post-translational modifications for CHERP Gene

  • Ubiquitination at Lys177
  • Modification sites at PhosphoSitePlus

Other Protein References for CHERP Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CHERP Gene

Domains & Families for CHERP Gene

Gene Families for CHERP Gene

Suggested Antigen Peptide Sequences for CHERP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CHERP: view

No data available for UniProtKB/Swiss-Prot for CHERP Gene

Function for CHERP Gene

Molecular function for CHERP Gene

UniProtKB/Swiss-Prot Function:
Involved in calcium homeostasis, growth and proliferation.

Gene Ontology (GO) - Molecular Function for CHERP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0003723 RNA binding IDA,IEA 22658674
GO:0005515 protein binding IPI 22365833
GO:0044325 ion channel binding IPI 21454501
genes like me logo Genes that share ontologies with CHERP: view
genes like me logo Genes that share phenotypes with CHERP: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CHERP Gene

Localization for CHERP Gene

Subcellular locations from UniProtKB/Swiss-Prot for CHERP Gene

Cytoplasm. Cytoplasm, perinuclear region. Endoplasmic reticulum. Note=Distributed throughout the cytoplasm and also localizes to the perinuclear region of both human erythroleukemia (HEL) cells and Jurkat cells. Colocalizes with ITPR1. {ECO:0000269 PubMed:10794731, ECO:0000269 PubMed:12656674, ECO:0000269 PubMed:8010949}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CHERP gene
Compartment Confidence
nucleus 5
endoplasmic reticulum 5
cytosol 2

Gene Ontology (GO) - Cellular Components for CHERP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm TAS --
GO:0005737 cytoplasm IEA,IDA 10794731
GO:0005783 endoplasmic reticulum IEA --
GO:0016020 membrane IDA 19946888
GO:0033017 sarcoplasmic reticulum membrane ISS,IEA --
genes like me logo Genes that share ontologies with CHERP: view

Pathways & Interactions for CHERP Gene

genes like me logo Genes that share pathways with CHERP: view

Pathways by source for CHERP Gene

Gene Ontology (GO) - Biological Process for CHERP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000398 mRNA splicing, via spliceosome TAS --
GO:0006396 RNA processing IEA --
GO:0006874 cellular calcium ion homeostasis IDA 10794731
GO:0007399 nervous system development TAS 8896557
GO:0008285 negative regulation of cell proliferation IDA 10794731
genes like me logo Genes that share ontologies with CHERP: view

No data available for SIGNOR curated interactions for CHERP Gene

Drugs & Compounds for CHERP Gene

(3) Drugs for CHERP Gene - From: HMDB and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
calcium Nutra 0
genes like me logo Genes that share compounds with CHERP: view

Transcripts for CHERP Gene

Unigene Clusters for CHERP Gene

Calcium homeostasis endoplasmic reticulum protein:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CHERP Gene

No ASD Table

Relevant External Links for CHERP Gene

GeneLoc Exon Structure for
CHERP
ECgene alternative splicing isoforms for
CHERP

Expression for CHERP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CHERP Gene

Protein differential expression in normal tissues from HIPED for CHERP Gene

This gene is overexpressed in Lymph node (8.6) and Fetal ovary (6.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CHERP Gene



Protein tissue co-expression partners for CHERP Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CHERP Gene:

CHERP

SOURCE GeneReport for Unigene cluster for CHERP Gene:

Hs.740364

mRNA Expression by UniProt/SwissProt for CHERP Gene:

Q8IWX8-CHERP_HUMAN
Tissue specificity: Expressed in brain, placenta, lung, liver, kidney, pancreas, cardiac and skeletal muscle, and in cultured HEL and Dami cells.

Evidence on tissue expression from TISSUES for CHERP Gene

  • Nervous system(4.2)
  • Lung(3.3)
  • Intestine(2)
genes like me logo Genes that share expression patterns with CHERP: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for CHERP Gene

Orthologs for CHERP Gene

This gene was present in the common ancestor of animals.

Orthologs for CHERP Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CHERP 34 35
  • 95.3 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia CHERP 35
  • 95 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CHERP 34 35
  • 91.08 (n)
oppossum
(Monodelphis domestica)
Mammalia CHERP 35
  • 91 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CHERP 34 35
  • 90.28 (n)
rat
(Rattus norvegicus)
Mammalia Cherp 34
  • 86.29 (n)
mouse
(Mus musculus)
Mammalia Cherp 34 16 35
  • 85.12 (n)
chicken
(Gallus gallus)
Aves CHERP 34 35
  • 74.75 (n)
lizard
(Anolis carolinensis)
Reptilia CHERP 35
  • 87 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cherp 34
  • 72.21 (n)
African clawed frog
(Xenopus laevis)
Amphibia cherp-prov 34
zebrafish
(Danio rerio)
Actinopterygii cherp 34 35
  • 72.76 (n)
iktdsubc_2h12 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9770 34
fruit fly
(Drosophila melanogaster)
Insecta scaf6 35
  • 36 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea tag-65 35
  • 27 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.5488 35
  • 39 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.2440 34
Species where no ortholog for CHERP was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CHERP Gene

ENSEMBL:
Gene Tree for CHERP (if available)
TreeFam:
Gene Tree for CHERP (if available)

Paralogs for CHERP Gene

No data available for Paralogs for CHERP Gene

Variants for CHERP Gene

Sequence variations from dbSNP and Humsavar for CHERP Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000003678 -- 16,543,754(+) GGAGT(C/G)CAGTG upstream-variant-2KB
rs1000046955 -- 16,530,095(+) GATGA(C/G)GATGT intron-variant
rs1000175285 -- 16,533,501(+) GCCTG(C/T)AATCC intron-variant
rs1000190575 -- 16,534,062(+) CTTTT(C/T)TTTTT intron-variant
rs1000211722 -- 16,539,324(+) TTGTA(A/T)TTTTA intron-variant

Variation tolerance for CHERP Gene

Residual Variation Intolerance Score: 4.71% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.97; 19.94% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CHERP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CHERP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CHERP Gene

Disorders for CHERP Gene

Relevant External Links for CHERP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CHERP

No disorders were found for CHERP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CHERP Gene

Publications for CHERP Gene

  1. Cloning of human Ca2+ homoeostasis endoplasmic reticulum protein (CHERP): regulated expression of antisense cDNA depletes CHERP, inhibits intracellular Ca2+ mobilization and decreases cell proliferation. (PMID: 10794731) LaPlante J.M. … Feinstein M.B. (Biochem. J. 2000) 2 3 4 22 64
  2. Antisense-mediated loss of calcium homoeostasis endoplasmic reticulum protein (CHERP; ERPROT213-21) impairs Ca2+ mobilization, nuclear factor of activated T-cells (NFAT) activation and cell proliferation in Jurkat T-lymphocytes. (PMID: 12656674) O'Rourke F.A. … Feinstein M.B. (Biochem. J. 2003) 3 4 22 64
  3. Cloning of the gene for spinocerebellar ataxia 2 reveals a locus with high sensitivity to expanded CAG/glutamine repeats. (PMID: 8896557) Imbert G. … Brice A. (Nat. Genet. 1996) 2 3 4 64
  4. Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation. (PMID: 25921289) Emdal K.B. … Olsen J.V. (Sci Signal 2015) 3 64
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64

Products for CHERP Gene

Sources for CHERP Gene

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