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Aliases for CHDH Gene

Aliases for CHDH Gene

  • Choline Dehydrogenase 2 3
  • EC 1.1.99.1 4 63
  • CDH 3 4
  • CHD 3 4
  • Choline Dehydrogenase, Mitochondrial 3
  • CHDH4 6
  • MIA40 6

External Ids for CHDH Gene

Previous GeneCards Identifiers for CHDH Gene

  • GC03M053019
  • GC03M053706
  • GC03M053808
  • GC03M053826

Summaries for CHDH Gene

Entrez Gene Summary for CHDH Gene

  • The protein encoded by this gene is a choline dehydrogenase that localizes to the mitochondrion. Variations in this gene can affect susceptibility to choline deficiency. A few transcript variants have been found for this gene, but the full-length nature of only one has been characterized to date. [provided by RefSeq, Dec 2010]

GeneCards Summary for CHDH Gene

CHDH (Choline Dehydrogenase) is a Protein Coding gene. Diseases associated with CHDH include tooth agenesis. Among its related pathways are Metabolism and Glycine, serine and threonine metabolism. GO annotations related to this gene include flavin adenine dinucleotide binding and choline dehydrogenase activity.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHDH Gene

Genomics for CHDH Gene

Regulatory Elements for CHDH Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CHDH Gene

Start:
53,812,335 bp from pter
End:
53,846,393 bp from pter
Size:
34,059 bases
Orientation:
Minus strand

Genomic View for CHDH Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CHDH Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHDH Gene

Proteins for CHDH Gene

  • Protein details for CHDH Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NE62-CHDH_HUMAN
    Recommended name:
    Choline dehydrogenase, mitochondrial
    Protein Accession:
    Q8NE62
    Secondary Accessions:
    • Q9NY17

    Protein attributes for CHDH Gene

    Size:
    594 amino acids
    Molecular mass:
    65358 Da
    Cofactor:
    Name=FAD; Xref=ChEBI:CHEBI:57692;
    Quaternary structure:
    No Data Available

neXtProt entry for CHDH Gene

Proteomics data for CHDH Gene at MOPED

Selected DME Specific Peptides for CHDH Gene

Post-translational modifications for CHDH Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CHDH Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains for CHDH Gene

Protein Domains for CHDH Gene

Suggested Antigen Peptide Sequences for CHDH Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NE62

UniProtKB/Swiss-Prot:

CHDH_HUMAN :
  • Q8NE62
Family:
  • Belongs to the GMC oxidoreductase family.
genes like me logo Genes that share domains with CHDH: view

No data available for Gene Families for CHDH Gene

Function for CHDH Gene

Molecular function for CHDH Gene

UniProtKB/Swiss-Prot CatalyticActivity: Choline + acceptor = betaine aldehyde + reduced acceptor

Enzyme Numbers (IUBMB) for CHDH Gene

Gene Ontology (GO) - Molecular Function for CHDH Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0008812 choline dehydrogenase activity IEA --
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors --
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen --
GO:0050660 flavin adenine dinucleotide binding IEA --
genes like me logo Genes that share ontologies with CHDH: view

Phenotypes for CHDH Gene

genes like me logo Genes that share phenotypes with CHDH: view

Animal Models for CHDH Gene

MGI Knock Outs for CHDH:

Animal Model Products

CRISPR Products

miRNA for CHDH Gene

miRTarBase miRNAs that target CHDH

No data available for Transcription Factor Targeting and HOMER Transcription for CHDH Gene

Localization for CHDH Gene

Subcellular locations from UniProtKB/Swiss-Prot for CHDH Gene

Mitochondrion inner membrane.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CHDH Gene COMPARTMENTS Subcellular localization image for CHDH gene
Compartment Confidence
mitochondrion 2
cytosol 1
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for CHDH Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion --
GO:0005743 mitochondrial inner membrane IEA --
genes like me logo Genes that share ontologies with CHDH: view

Pathways for CHDH Gene

genes like me logo Genes that share pathways with CHDH: view

Pathways by source for CHDH Gene

1 BioSystems pathway for CHDH Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

UniProtKB/Swiss-Prot Q8NE62-CHDH_HUMAN

  • Pathway: Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine aldehyde from choline (cytochrome c reductase route): step 1/1

Gene Ontology (GO) - Biological Process for CHDH Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006066 alcohol metabolic process --
GO:0016117 carotenoid biosynthetic process --
GO:0019285 glycine betaine biosynthetic process from choline IEA --
GO:0055114 oxidation-reduction process IEA --
genes like me logo Genes that share ontologies with CHDH: view

Compounds for CHDH Gene

(9) HMDB Compounds for CHDH Gene

Compound Synonyms Cas Number PubMed IDs
Betaine
  • (Carboxymethyl)trimethylammonium hydroxide inner salt
107-43-7
Betaine aldehyde
  • (Formylmethyl)trimethylammonium
7418-61-3
Choline
  • (2-Hydroxyethyl)trimethyl ammonium
62-49-7
FAD
  • 1H-Purin-6-amine flavin dinucleotide
146-14-5
N1-Acetylspermine
  • N'-Acetylspermine
25593-72-0

(1) Drugbank Compounds for CHDH Gene

Compound Synonyms Cas Number Type Actions PubMed IDs
Choline
  • Bilineurine
62-49-7 enzyme substrate

(3) Novoseek inferred chemical compound relationships for CHDH Gene

Compound -log(P) Hits PubMed IDs
betaine aldehyde 90.6 2
betaine 72.7 3
choline 72.6 9
genes like me logo Genes that share compounds with CHDH: view

Transcripts for CHDH Gene

Unigene Clusters for CHDH Gene

Choline dehydrogenase:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CHDH

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for CHDH

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CHDH Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b · 5c · 5d ^ 6 ^ 7a · 7b ^ 8 ^ 9
SP1: -
SP2: -
SP3:

Relevant External Links for CHDH Gene

GeneLoc Exon Structure for
CHDH
ECgene alternative splicing isoforms for
CHDH

Expression for CHDH Gene

mRNA expression in normal human tissues for CHDH Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CHDH Gene

This gene is overexpressed in Liver (7.0) and Kidney - Cortex (5.9).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for CHDH Gene

SOURCE GeneReport for Unigene cluster for CHDH Gene Hs.126688

genes like me logo Genes that share expressions with CHDH: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for CHDH Gene

Orthologs for CHDH Gene

This gene was present in the common ancestor of animals.

Orthologs for CHDH Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CHDH 35
  • 99.49 (n)
  • 99.33 (a)
CHDH 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CHDH 35
  • 87.69 (n)
  • 89.71 (a)
CHDH 36
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CHDH 35
  • 88.59 (n)
  • 89.55 (a)
CHDH 36
  • 73 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Chdh 35
  • 83.14 (n)
  • 83.93 (a)
Chdh 16
Chdh 36
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CHDH 36
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CHDH 36
  • 83 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Chdh 35
  • 83 (n)
  • 85.19 (a)
chicken
(Gallus gallus)
Aves CHDH 35
  • 67.35 (n)
  • 77.57 (a)
CHDH 36
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CHDH 36
  • 70 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.31969 35
zebrafish
(Danio rerio)
Actinopterygii chdh 35
  • 70.39 (n)
  • 74.29 (a)
chdh 36
  • 72 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG12398 36
  • 32 (a)
OneToMany
CG12539 36
  • 29 (a)
OneToMany
CG6142 36
  • 32 (a)
OneToMany
CG9503 36
  • 32 (a)
OneToMany
CG9509 36
  • 27 (a)
OneToMany
CG9512 36
  • 30 (a)
OneToMany
CG9514 36
  • 28 (a)
OneToMany
CG9517 36
  • 24 (a)
OneToMany
CG9518 36
  • 31 (a)
OneToMany
CG9519 36
  • 31 (a)
OneToMany
CG9521 36
  • 31 (a)
OneToMany
CG9522 36
  • 31 (a)
OneToMany
Eo 36
  • 25 (a)
OneToMany
Gld 36
  • 30 (a)
OneToMany
ninaG 36
  • 26 (a)
OneToMany
Gld 37
  • 34 (a)
CG6142 37
  • 36 (a)
CG9503 37
  • 35 (a)
ninaG 37
  • 27 (a)
CG9512 37
  • 33 (a)
CG12398 37
  • 35 (a)
CG12539 37
  • 34 (a)
CG9517 37
  • 36 (a)
CG9522 37
  • 34 (a)
CG9509 37
  • 31 (a)
CG9519 37
  • 35 (a)
CG9521 37
  • 41 (a)
CG9514 37
  • 37 (a)
CG9518 37
  • 38 (a)
worm
(Caenorhabditis elegans)
Secernentea C34C6.4 35
  • 52.98 (n)
  • 57.82 (a)
C34C6.4 36
  • 52 (a)
OneToOne
C34C6.4 37
  • 55 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.5658 36
  • 67 (a)
OneToOne
Species with no ortholog for CHDH:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for CHDH Gene

ENSEMBL:
Gene Tree for CHDH (if available)
TreeFam:
Gene Tree for CHDH (if available)

Paralogs for CHDH Gene

No data available for Paralogs for CHDH Gene

Variants for CHDH Gene

Sequence variations from dbSNP and Humsavar for CHDH Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs9001 - 53,823,890(-) GGACG(A/C)GTACA reference, missense
rs12676 - 53,823,776(-) CGTGC(G/T)CGCGG missense, reference
rs893368 -- 53,821,328(-) ATGGC(A/G/T)AGAGG intron-variant
rs920253 -- 53,838,726(-) TCCCC(A/C/G)ACTGC intron-variant
rs930366 -- 53,842,011(-) GCCTG(A/G)CTAAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CHDH Gene

Variant ID Type Subtype PubMed ID
nsv876803 CNV Loss 21882294
dgv283n21 CNV Loss 19592680
nsv876804 CNV Gain 21882294
nsv876805 CNV Loss 21882294

Relevant External Links for CHDH Gene

HapMap Linkage Disequilibrium report
CHDH
Human Gene Mutation Database (HGMD)
CHDH

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CHDH Gene

Disorders for CHDH Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for CHDH Gene including...

Search for CHDH Gene in MalaCards »

Relevant External Links for CHDH

Genetic Association Database (GAD)
CHDH
Human Genome Epidemiology (HuGE) Navigator
CHDH
genes like me logo Genes that share disorders with CHDH: view

No data available for UniProtKB/Swiss-Prot for CHDH Gene

Publications for CHDH Gene

  1. Common genetic polymorphisms affect the human requirement for the nutrient choline. (PMID: 16816108) da Costa K.A. … Zeisel S.H. (FASEB J. 2006) 3 23 25 48
  2. Single nucleotide polymorphisms in homocysteine metabolism pathway genes: association of CHDH A119C and MTHFR C677T with hyperhomocysteinemia. (PMID: 20031640) Kumar J. … Sengupta S. (Circ Cardiovasc Genet 2009) 3 23
  3. Cystathionine beta-synthase 844Ins68 polymorphism is not associated with the levels of homocysteine and cysteine in an Indian population. (PMID: 20175737) Kumar J. … Sengupta S. (Biomarkers 2010) 3 23
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Choline metabolism and risk of breast cancer in a population-based study. (PMID: 18230680) Xu X. … Chen J. (FASEB J. 2008) 3 48

Products for CHDH Gene

Sources for CHDH Gene

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