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Aliases for CHCHD4P3 Gene

Subcategory (RNA class) for CHCHD4P3 Gene

lncRNA

Aliases for CHCHD4P3 Gene

  • Coiled-Coil-Helix-Coiled-Coil-Helix Domain Containing 4 Pseudogene 3 2 3 5

External Ids for CHCHD4P3 Gene

ORGUL Members for CHCHD4P3 Gene

Summaries for CHCHD4P3 Gene

GeneCards Summary for CHCHD4P3 Gene

CHCHD4P3 (Coiled-Coil-Helix-Coiled-Coil-Helix Domain Containing 4 Pseudogene 3) is a Pseudogene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for CHCHD4P3 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for CHCHD4P3

Additional gene information for CHCHD4P3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for CHCHD4P3 Gene

Genomics for CHCHD4P3 Gene

Regulatory Elements for CHCHD4P3 Gene

Enhancers for CHCHD4P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H037430 1 ENCODE dbSUPER 0.7 -3.2 -3172 0 CTCF ZFP64 ARID4B MAX DMAP1 ZIC2 THRB KMT2B RAD21 POLR2A ZBTB5 CHCHD4P3 GRHPR
GH09H037421 1.3 ENCODE dbSUPER 0.4 -10.8 -10847 3 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF143 ZNF207 SP3 SP5 GRHPR SHB CHCHD4P3
GH09H037433 0.6 ENCODE dbSUPER 0.7 -0.1 -56 1 NR2F2 ZBTB5 GRHPR CHCHD4P3
GH09H037432 0.4 dbSUPER 0.7 -1.2 -1217 0 POLR2A EGR2 ZBTB5 CHCHD4P3 GRHPR
GH09H037436 0.4 dbSUPER 0.7 +2.8 2761 1 ZNF121 POLR2A ZBTB5 PIR34813 CHCHD4P3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CHCHD4P3 on UCSC Golden Path with GeneCards custom track

Genomic Location for CHCHD4P3 Gene

Chromosome:
9
Start:
37,434,177 bp from pter
End:
37,434,586 bp from pter
Size:
410 bases
Orientation:
Plus strand

Genomic View for CHCHD4P3 Gene

Genes around CHCHD4P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHCHD4P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHCHD4P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHCHD4P3 Gene

ORGUL Member Location for CHCHD4P3 Gene

ORGUL Member Location for CHCHD4P3 gene

Proteins for CHCHD4P3 Gene

Post-translational modifications for CHCHD4P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CHCHD4P3 Gene

Domains & Families for CHCHD4P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CHCHD4P3 Gene

Function for CHCHD4P3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CHCHD4P3 Gene

Localization for CHCHD4P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CHCHD4P3 Gene

Pathways & Interactions for CHCHD4P3 Gene

SuperPathways for CHCHD4P3 Gene

No Data Available

Interacting Proteins for CHCHD4P3 Gene

Gene Ontology (GO) - Biological Process for CHCHD4P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CHCHD4P3 Gene

Drugs & Compounds for CHCHD4P3 Gene

No Compound Related Data Available

Transcripts for CHCHD4P3 Gene

fRNAdb Secondary structures for CHCHD4P3 Gene

  • FR349562

mRNA/cDNA for CHCHD4P3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CHCHD4P3 Gene

No ASD Table

Relevant External Links for CHCHD4P3 Gene

GeneLoc Exon Structure for
CHCHD4P3
ECgene alternative splicing isoforms for
CHCHD4P3

Expression for CHCHD4P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CHCHD4P3 Gene

mRNA differential expression in normal tissues according to GTEx for CHCHD4P3 Gene

This gene is overexpressed in Liver (x6.4).

NURSA nuclear receptor signaling pathways regulating expression of CHCHD4P3 Gene:

CHCHD4P3
genes like me logo Genes that share expression patterns with CHCHD4P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CHCHD4P3 Gene

Orthologs for CHCHD4P3 Gene

Evolution for CHCHD4P3 Gene

ENSEMBL:
Gene Tree for CHCHD4P3 (if available)
TreeFam:
Gene Tree for CHCHD4P3 (if available)

No data available for Orthologs for CHCHD4P3 Gene

Paralogs for CHCHD4P3 Gene

No data available for Paralogs for CHCHD4P3 Gene

Variants for CHCHD4P3 Gene

Relevant External Links for CHCHD4P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CHCHD4P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CHCHD4P3 Gene

Disorders for CHCHD4P3 Gene

No disorders were found for CHCHD4P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CHCHD4P3 Gene

Publications for CHCHD4P3 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for CHCHD4P3 Gene

Sources for CHCHD4P3 Gene

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