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Aliases for CHAF1A Gene

Aliases for CHAF1A Gene

  • Chromatin Assembly Factor 1 Subunit A 2 3 5
  • Chromatin Assembly Factor I P150 Subunit 3 4
  • Chromatin Assembly Factor I (150 KDa) 2 3
  • CAF-I 150 KDa Subunit 3 4
  • CAF-1 Subunit A 3 4
  • CAF-I P150 3 4
  • CAF1P150 3 4
  • Hp150 3 4
  • Chromatin Assembly Factor 1, Subunit A (P150) 2
  • CTB-50L17.7 3
  • CAF-1 3
  • CAF1B 3
  • P150 3
  • CAF1 3
  • CAF 4

External Ids for CHAF1A Gene

Previous GeneCards Identifiers for CHAF1A Gene

  • GC19P004494
  • GC19P004342
  • GC19P004353
  • GC19P004165

Summaries for CHAF1A Gene

Entrez Gene Summary for CHAF1A Gene

  • Chromatin assembly factor I (CAF1) is a nuclear complex consisting of p50, p60 (CHAF1B; MIM 601245), and p150 (CHAF1A) subunits that assembles histone octamers onto replicating DNA in vitro (Kaufman et al., 1995 [PubMed 7600578]).[supplied by OMIM, Mar 2008]

GeneCards Summary for CHAF1A Gene

CHAF1A (Chromatin Assembly Factor 1 Subunit A) is a Protein Coding gene. Among its related pathways are Chromatin Regulation / Acetylation and Autophagy Pathway. GO annotations related to this gene include identical protein binding and unfolded protein binding.

UniProtKB/Swiss-Prot for CHAF1A Gene

  • Core component of the CAF-1 complex, a complex thought to mediate chromatin assembly in DNA replication and DNA repair. Assembles histone octamers onto replicating DNA in vitro. CAF-1 performs the first step of the nucleosome assembly process, bringing newly synthesized histones H3 and H4 to replicating DNA; histones H2A/H2B can bind to this chromatin precursor subsequent to DNA replication to complete the histone octamer. CHAF1A binds to histones H3 and H4. It may play a role in heterochromatin maintenance in proliferating cells by bringing newly synthesized cbx proteins to heterochromatic DNA replication foci (By similarity).

Gene Wiki entry for CHAF1A Gene

Additional gene information for CHAF1A Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHAF1A Gene

Genomics for CHAF1A Gene

Regulatory Elements for CHAF1A Gene

Enhancers for CHAF1A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H004453 1.8 FANTOM5 ENCODE dbSUPER 53 +53.4 53448 5 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ENSG00000267769 CHAF1A UBXN6 SH3GL1 ENSG00000267030 CACTIN-AS1 CCDC94 CACTIN DPP9-AS1 KDM4B
GH19H004367 2 FANTOM5 Ensembl ENCODE dbSUPER 27.9 -27.8 -27792 14 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZNF766 ENSG00000267769 CACTIN SEMA6B CHAF1A CCDC94 ENSG00000267030 SH3GL1 UBXN6 HDGFL2 CACTIN-AS1
GH19H004398 1.4 ENCODE dbSUPER 39.2 -1.0 -1040 6 MLX YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC SSRP1 ENSG00000267769 CHAF1A CACTIN-AS1 CACTIN UBXN6 PIAS4 ENSG00000267030 CCDC94 ENSG00000267980 DPP9-AS1
GH19H004388 1.5 Ensembl ENCODE dbSUPER 36 -10.9 -10904 7 PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 YY1 ZNF121 SLC30A9 FOS ENSG00000267769 CHAF1A UBXN6 SH3GL1 ENSG00000267980 PIR37989
GH19H004363 0.9 ENCODE dbSUPER 52.9 -39.3 -39294 0 SMARCA5 CTCF MAX MNT ZIC2 RAD21 POLR2A GLIS1 SMC3 ZBTB33 CHAF1A SH3GL1 FSD1 TMIGD2 ENSG00000269318 ENSG00000267980
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CHAF1A on UCSC Golden Path with GeneCards custom track

Promoters for CHAF1A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000106203 88 1401 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A FEZF1 YY1 ZNF143

Transcription factor binding sites by QIAGEN in the CHAF1A gene promoter:

Genomic Location for CHAF1A Gene

Chromosome:
19
Start:
4,402,612 bp from pter
End:
4,448,308 bp from pter
Size:
45,697 bases
Orientation:
Plus strand

Genomic View for CHAF1A Gene

Genes around CHAF1A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHAF1A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHAF1A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHAF1A Gene

Proteins for CHAF1A Gene

  • Protein details for CHAF1A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q13111-CAF1A_HUMAN
    Recommended name:
    Chromatin assembly factor 1 subunit A
    Protein Accession:
    Q13111
    Secondary Accessions:
    • Q6NXG5
    • Q7Z7K3
    • Q9UJY8

    Protein attributes for CHAF1A Gene

    Size:
    956 amino acids
    Molecular mass:
    106926 Da
    Quaternary structure:
    • Homodimer. Part of the CAF-1 complex that contains RBBP4, CHAF1B and CHAF1A. CHAF1A binds directly to CHAF1B. Only minor amounts of RBBP4 are complexed with CHAF1A and CHAF1B in G1 phase. CHAF1A binds directly to PCNA and to CBX1. Binds MBD1. Interacts directly with CBX5 via the PxVxL motif. During DNA replication, it forms a S phase-specific complex that facilitates DNA methylation and histone H3 Lys-9 methylation during replication-coupled chromatin assembly and is at least composed of the CHAF1A, MBD1 and SETDB1. Interacts with CBX5.
    SequenceCaution:
    • Sequence=AAA76736.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAF04291.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAH52620.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH52620.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence starting in position 426.; Evidence={ECO:0000305};

    Alternative splice isoforms for CHAF1A Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CHAF1A Gene

Post-translational modifications for CHAF1A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CHAF1A Gene

No data available for DME Specific Peptides for CHAF1A Gene

Domains & Families for CHAF1A Gene

Gene Families for CHAF1A Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CHAF1A Gene

Suggested Antigen Peptide Sequences for CHAF1A Gene

Graphical View of Domain Structure for InterPro Entry

Q13111

UniProtKB/Swiss-Prot:

CAF1A_HUMAN :
  • Contains one Pro-Xaa-Val-Xaa-Leu (PxVxL) motif, which is required for interaction with chromoshadow domains. This motif requires additional residues -7, -6, +4 and +5 of the central Val which contact the chromoshadow domain.
  • Belongs to the CHAF1A family.
Domain:
  • Contains one Pro-Xaa-Val-Xaa-Leu (PxVxL) motif, which is required for interaction with chromoshadow domains. This motif requires additional residues -7, -6, +4 and +5 of the central Val which contact the chromoshadow domain.
Family:
  • Belongs to the CHAF1A family.
genes like me logo Genes that share domains with CHAF1A: view

Function for CHAF1A Gene

Molecular function for CHAF1A Gene

UniProtKB/Swiss-Prot Function:
Core component of the CAF-1 complex, a complex thought to mediate chromatin assembly in DNA replication and DNA repair. Assembles histone octamers onto replicating DNA in vitro. CAF-1 performs the first step of the nucleosome assembly process, bringing newly synthesized histones H3 and H4 to replicating DNA; histones H2A/H2B can bind to this chromatin precursor subsequent to DNA replication to complete the histone octamer. CHAF1A binds to histones H3 and H4. It may play a role in heterochromatin maintenance in proliferating cells by bringing newly synthesized cbx proteins to heterochromatic DNA replication foci (By similarity).

Phenotypes From GWAS Catalog for CHAF1A Gene

Gene Ontology (GO) - Molecular Function for CHAF1A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003682 chromatin binding TAS 7600578
GO:0005515 protein binding IPI 15805117
GO:0042802 identical protein binding IPI 16826239
GO:0051082 unfolded protein binding TAS 7600578
GO:0070087 chromo shadow domain binding IPI 15882967
genes like me logo Genes that share ontologies with CHAF1A: view
genes like me logo Genes that share phenotypes with CHAF1A: view

Animal Models for CHAF1A Gene

MGI Knock Outs for CHAF1A:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CHAF1A
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CHAF1A Gene

Localization for CHAF1A Gene

Subcellular locations from UniProtKB/Swiss-Prot for CHAF1A Gene

Nucleus. Note=DNA replication foci.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CHAF1A gene
Compartment Confidence
nucleus 5
cytosol 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nucleus (3)
  • Cytosol (1)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for CHAF1A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000790 nuclear chromatin IDA 14718166
GO:0005634 nucleus IEA --
GO:0033186 CAF-1 complex IDA 8858152
GO:0043234 protein complex IDA 14718166
genes like me logo Genes that share ontologies with CHAF1A: view

Pathways & Interactions for CHAF1A Gene

genes like me logo Genes that share pathways with CHAF1A: view

Pathways by source for CHAF1A Gene

1 Cell Signaling Technology pathway for CHAF1A Gene
1 BioSystems pathway for CHAF1A Gene

Gene Ontology (GO) - Biological Process for CHAF1A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006260 DNA replication IEA --
GO:0006281 DNA repair IEA --
GO:0006335 DNA replication-dependent nucleosome assembly IDA,TAS 14718166
GO:0006461 protein complex assembly TAS 7600578
GO:0006974 cellular response to DNA damage stimulus IEA --
genes like me logo Genes that share ontologies with CHAF1A: view

No data available for SIGNOR curated interactions for CHAF1A Gene

Drugs & Compounds for CHAF1A Gene

No Compound Related Data Available

Transcripts for CHAF1A Gene

Unigene Clusters for CHAF1A Gene

Chromatin assembly factor 1, subunit A (p150):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CHAF1A
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CHAF1A Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c · 3d ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b ^ 15
SP1: - - -
SP2:
SP3:
SP4: - -
SP5:

Relevant External Links for CHAF1A Gene

GeneLoc Exon Structure for
CHAF1A
ECgene alternative splicing isoforms for
CHAF1A

Expression for CHAF1A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CHAF1A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for CHAF1A Gene

This gene is overexpressed in Adipocyte (44.7) and Testis (14.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CHAF1A Gene



Protein tissue co-expression partners for CHAF1A Gene

NURSA nuclear receptor signaling pathways regulating expression of CHAF1A Gene:

CHAF1A

SOURCE GeneReport for Unigene cluster for CHAF1A Gene:

Hs.79018

Evidence on tissue expression from TISSUES for CHAF1A Gene

  • Nervous system(4.2)
genes like me logo Genes that share expression patterns with CHAF1A: view

Primer Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for CHAF1A Gene

Orthologs for CHAF1A Gene

This gene was present in the common ancestor of animals.

Orthologs for CHAF1A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CHAF1A 33 34
  • 98.99 (n)
dog
(Canis familiaris)
Mammalia CHAF1A 33 34
  • 83.05 (n)
cow
(Bos Taurus)
Mammalia CHAF1A 33 34
  • 80.77 (n)
rat
(Rattus norvegicus)
Mammalia Chaf1a 33
  • 71.79 (n)
mouse
(Mus musculus)
Mammalia Chaf1a 33 16 34
  • 71.38 (n)
oppossum
(Monodelphis domestica)
Mammalia CHAF1A 34
  • 62 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CHAF1A 34
  • 34 (a)
OneToOne
chicken
(Gallus gallus)
Aves CHAF1A 33 34
  • 65.14 (n)
lizard
(Anolis carolinensis)
Reptilia CHAF1A 34
  • 54 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100485264 33
  • 60.98 (n)
Str.1170 33
African clawed frog
(Xenopus laevis)
Amphibia LOC398222 33
zebrafish
(Danio rerio)
Actinopterygii chaf1a 34
  • 45 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.5956 33
fruit fly
(Drosophila melanogaster)
Insecta Caf1-180 34
  • 19 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea chaf-1 34
  • 26 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 42 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.1879 33
Species where no ortholog for CHAF1A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CHAF1A Gene

ENSEMBL:
Gene Tree for CHAF1A (if available)
TreeFam:
Gene Tree for CHAF1A (if available)

Paralogs for CHAF1A Gene

Pseudogenes.org Pseudogenes for CHAF1A Gene

genes like me logo Genes that share paralogs with CHAF1A: view

No data available for Paralogs for CHAF1A Gene

Variants for CHAF1A Gene

Sequence variations from dbSNP and Humsavar for CHAF1A Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000017959 -- 4,448,271(+) GTGCT(A/G)GGATG intron-variant, nc-transcript-variant
rs1000034734 -- 4,444,649(+) ACCTT(C/T)CATCA intron-variant, downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs1000039531 -- 4,410,696(+) ATTTT(C/T)AAAAG intron-variant
rs1000047223 -- 4,442,358(+) TGTAG(A/T)TAGCA intron-variant
rs1000061425 -- 4,444,059(+) TGAAG(C/T)AGAGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CHAF1A Gene

Variant ID Type Subtype PubMed ID
esv3555904 CNV deletion 23714750
nsv476449 CNV novel sequence insertion 20440878
nsv833718 CNV loss 17160897
nsv833720 CNV loss 17160897

Variation tolerance for CHAF1A Gene

Residual Variation Intolerance Score: 16.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.96; 59.86% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CHAF1A Gene

Human Gene Mutation Database (HGMD)
CHAF1A
SNPedia medical, phenotypic, and genealogical associations of SNPs for
CHAF1A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CHAF1A Gene

Disorders for CHAF1A Gene

Relevant External Links for CHAF1A

Genetic Association Database (GAD)
CHAF1A
Human Genome Epidemiology (HuGE) Navigator
CHAF1A
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CHAF1A

No disorders were found for CHAF1A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CHAF1A Gene

Publications for CHAF1A Gene

  1. The p150 and p60 subunits of chromatin assembly factor I: a molecular link between newly synthesized histones and DNA replication. (PMID: 7600578) Kaufman PD … Stillman B (Cell 1995) 2 3 4 22 60
  2. Dimerization of the largest subunit of chromatin assembly factor 1: importance in vitro and during Xenopus early development. (PMID: 11296234) Quivy JP … Almouzni G (The EMBO journal 2001) 3 4 22 60
  3. Genomic sequence and expression analyses of human chromatin assembly factor 1 p150 gene. (PMID: 11250073) Dong H … Huang GM (Gene 2001) 3 4 22 60
  4. CAF-1 and the inheritance of chromatin states: at the crossroads of DNA replication and repair. (PMID: 10893180) Ridgway P … Almouzni G (Journal of cell science 2000) 3 4 22 60
  5. A CAF-1-PCNA-mediated chromatin assembly pathway triggered by sensing DNA damage. (PMID: 10648606) Moggs JG … Almouzni G (Molecular and cellular biology 2000) 3 4 22 60

Products for CHAF1A Gene

Sources for CHAF1A Gene

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