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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CHADL Gene

protein-coding   GIFtS: 43
GCID: GC22M041625

Chondroadherin-Like

  Search for CHADL
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
chondroadherin-like1 2
SLRR4B2 3
Chondroadherin-Like Protein2

External Ids:    HGNC: 251651   Entrez Gene: 1503562   Ensembl: ENSG000001003997   UniProtKB: Q6NUI63   
ORGUL members:         

Export aliases for CHADL gene to outside databases

Previous GC identifers: GC22U900391 GC22M039955 GC22M024589


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for CHADL Gene: 
CHADL (chondroadherin-like) is a protein-coding gene. An important paralog of this gene is GP5.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000022.10  NT_011520.12  NC_018933.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CHADL gene promoter:
         Pax-5   Brachyury   Olf-1   AP-4   LCR-F1   C/EBPalpha   E47   CREB   Max   c-Myc   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for CHADL

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CHADL


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 22q13.2   Ensembl cytogenetic band:  22q13.2   HGNC cytogenetic band: 22q13.2

CHADL Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CHADL gene location

GeneLoc information about chromosome 22         GeneLoc Exon Structure

GeneLoc location for GC22M041625:  view genomic region     (about GC identifiers)

Start:
41,625,514 bp from pter      End:
41,636,938 bp from pter
Size:
11,425 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: CHADL_HUMAN, Q6NUI6 (See protein sequence)
Recommended Name: Chondroadherin-like protein precursor  
Size: 762 amino acids; 82388 Da
Subcellular location: Secreted, extracellular space, extracellular matrix (By similarity)
Sequence caution: Sequence=AAH19839.1; Type=Frameshift; Positions=504; Sequence=AAH68590.1; Type=Erroneous
initiation;
Secondary accessions: Q05CY2 Q4G0S0 Q5JY13 Q86XY1 Q96E60
Alternative splicing: 2 isoforms:  Q6NUI6-1   Q6NUI6-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for CHADL: NX_Q6NUI6

Explore proteomics data for CHADL at MOPED 

CHADL Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

CHADL Protein Expression

REFSEQ proteins: NP_612490.1  
ENSEMBL proteins: 
 ENSP00000392046   ENSP00000216241   ENSP00000412359  

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Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005578proteinaceous extracellular matrix IEA--
GO:0031012colocalizes with extracellular matrix ISS--

CHADL for ontologies           About GeneDecksing



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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
4 InterPro protein domains:
 IPR000483 Cys-rich_flank_reg_C
 IPR001611 Leu-rich_rpt
 IPR003591 Leu-rich_rpt_typical-subtyp
 IPR000372 LRR-contain_N

Graphical View of Domain Structure for InterPro Entry Q6NUI6

ProtoNet protein and cluster: Q6NUI6

3 Blocks protein domains:
IPB000372 Cysteine-rich flanking region
IPB000483 Cysteine-rich flanking region
IPB001611 Leucine-rich repeat signature


UniProtKB/Swiss-Prot: CHADL_HUMAN, Q6NUI6
Similarity: Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class IV subfamily
Similarity: Contains 19 LRR (leucine-rich) repeats
Similarity: Contains 2 LRRCT domains
Similarity: Contains 2 LRRNT domains


CHADL for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

     Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005515protein binding ----
     
CHADL for ontologies           About GeneDecksing


Animal Models:
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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CHADL

STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

2 Interacting proteins for CHADL (ENSP000002162414) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
GP1BAENSP000003293804STRING: ENSP00000329380
VWFENSP000002614054STRING: ENSP00000261405
About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
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Browse Tocris compounds for CHADL

Search CenterWatch for drugs/clinical trials and news about CHADL

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for CHADL gene: 
NM_138481.1  

Unigene Cluster for CHADL:

Chondroadherin-like
Hs.344488  [show with all ESTs]
Unigene Representative Sequence: BC068590
3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000417999 ENST00000216241(uc003azq.4 uc010gyj.3) ENST00000455425

miRNA
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Additional mRNA sequence: 

BC012882.1 BC019839.1 BC040188.1 BC048421.1 BC068590.1 

3 DOTS entries:

DT.91659395  DT.120647809  DT.40115125 

24/323 AceView cDNA sequences (see all 323):

BM550690 BE386030 BP430397 BM904795 BM542955 BQ641923 BM551464 CR597202 
BC068590 BG029913 BU732305 BQ893444 BQ687185 AA974279 BQ424384 BQ060789 
NM_002883 BQ710884 BP430437 AL134893 AI364515 BC004990 CD722788 BQ000147 

GeneLoc Exon Structure

3 Alternative Splicing Database (ASD) splice patterns (SP) for CHADL    About this scheme

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b
SP1:                    -     -     -                           
SP2:              -                                             
SP3:                                                            


ECgene alternative splicing isoforms for CHADL

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

CHADL expression in normal human tissues (normalized intensities)      CHADL embryonic expression: see
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GCCTTCCAGG
CHADL Expression
About this image


CHADL expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database 
 5/3 selected tissues (see all 3) fully expand
 
 Cartilage (Muscoskeletal System)    fully expand to see all 2 entries
         HyStem+TGFbeta3+GDF5-induced 4D20.8 cells
         fetal cartilage   
 
 Bone (Muscoskeletal System)
         HyStem+TGFbeta3+GDF5-induced 4D20.8 cells
 
 Brain (Nervous System)
         corpus callosum   

 -- (Nervous System)
         nodose nucleus   

See CHADL Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for CHADL

SOURCE GeneReport for Unigene cluster: Hs.344488
    SABiosciences Custom PCR Arrays for CHADL
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CHADL

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of animals.

Orthologs for CHADL gene from 6/11 species (see all 11)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Chadl1 , 5 chondroadherin-like1, 5 84.09(n)1
82.8(a)1
  15 (38.20 cM)5
2146851  NM_001164320.11  NP_001157792.11 
 816782965 
chicken
(Gallus gallus)
Aves CHADL1 chondroadherin-like 63.83(n)
55.17(a)
  417998  NM_001252276.1  NP_001239205.1 
lizard
(Anolis carolinensis)
Reptilia --
--
17(a)
possible ortholog
5(26264605-26274161)
zebrafish
(Danio rerio)
Actinopterygii LOC1003301761 chondroadherin-like protein-like 54.43(n)
48.82(a)
  100330176  XM_002663946.1  XP_002663992.1 
fruit fly
(Drosophila melanogaster)
Insecta Toll-66
CG423466
(see all 5)
--
8(a)
6(a)
(see all 5)
possible ortholog
possible ortholog
(see all 5)
3L(15329792-15337417)
X(22234235-22287377)
worm
(Caenorhabditis elegans)
Secernentea tol-16
pan-16
(see all 7)
Protein PAN-1, isoform b
(see all 7)
9(a)
15(a)
(see all 7)
possible ortholog
1 ↔ many
(see all 7)
I(443999-461607)
III(4562738-4566280)


ENSEMBL Gene Tree for CHADL (if available)
TreeFam Gene Tree for CHADL (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for CHADL gene
GP52  CPN22  LRRC152  LRRTM32  IGFALS2  LRIG12  LRRTM22  RTN4R2  
LRRTM12  LRG12  NYX2  LRIG32  LRRTM42  CHAD2  LRIG22  RTN4RL12  
LRRC702  RTN4RL22  
4 SIMAP similar genes for CHADL using alignment to 3 protein entries:     CHADL_HUMAN (see all proteins):
CHAD    ISLR    RTN4RL2    SLIT2

CHADL for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/208 SNPs in CHADL are shown (see all 208)    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 22 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs96115221,2
C,F,A,H--41627924(+) AGCCCC/TTACCC 1 -- int112Minor allele frequency- T:0.15NS EA NA WA 918
rs81351391,2
C,F,A--41628029(+) TAGTCG/ATTTGG 1 -- int16Minor allele frequency- A:0.05NA WA CSA 264
rs1478397921,2
--41628047(+) AATTTA/TCACCT 1 -- int10--------
rs1891169461,2
--41628063(+) CGGGCA/GCGGTG 1 -- int10--------
rs1394871,2
F--41628064(+) gggcgC/Tggtgg 1 -- int10--------
rs1414809301,2
C--41628065(+) GGCGCA/GGTGGC 1 -- int10--------
rs1844383921,2
C--41628074(+) GCTCAC/TGCCTG 1 -- int10--------
rs1502971791,2
--41628079(+) CGCCTA/GTAATC 1 -- int10--------
rs1119072081,2
C,F--41628107(+) CACGGC/TGGGCG 1 -- int11Minor allele frequency- T:0.50WA 2
rs72931371,2
C,F,A,H--41628119(+) ATCACG/AAGGTC 1 -- int15Minor allele frequency- A:0.40NA WA 10

HapMap Linkage Disequilibrium report for CHADL (41625514 - 41636938 bp)

Structural Variations
     Database of Genomic Variants (DGV) 6 variations for CHADL:    About this table     
Variant IDTypeSubtypePubMed ID
nsv915118CNV Loss21882294
nsv915117CNV Loss21882294
nsv915119CNV Loss21882294
nsv915116CNV Loss21882294
nsv524585CNV Loss19592680
nsv459888CNV Gain19166990

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

CHADL for disorders           About MalaCards

CHADL for disorders           About GeneDecksing

Genetic Association Database (GAD): CHADL

Export disorders for CHADL gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for CHADL gene integrated from 9 sources:
(articles sorted by number of sources associating them with CHADL)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
  2. Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (2008)
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
  4. The DNA sequence of human chromosome 22. (PubMed id 10591208)2 Dunham I....O'Brien K.P. (1999)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 150356 HGNC: 25165 AceView: RANGAP1 Ensembl:ENSG00000100399 euGenes: HUgn150356
ECgene: CHADL H-InvDB: CHADL

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for CHADL Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for CHADL gene:
Search GeneIP for patents involving CHADL

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
About This Section

 
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GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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