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Aliases for CHAD Gene

Aliases for CHAD Gene

  • Chondroadherin 2 3
  • Cartilage Leucine-Rich Protein 3 4
  • Chondroadherin Proteoglycan 2 3
  • SLRR4A 3 4

External Ids for CHAD Gene

Summaries for CHAD Gene

Entrez Gene Summary for CHAD Gene

  • Chondroadherin is a cartilage matrix protein thought to mediate adhesion of isolated chondrocytes. The protein contains 11 leucine-rich repeats flanked by cysteine-rich regions. The chondroadherin messenger RNA is present in chondrocytes at all ages. [provided by RefSeq, Jul 2008]

GeneCards Summary for CHAD Gene

CHAD (Chondroadherin) is a Protein Coding gene. Among its related pathways are PI3K-Akt signaling pathway and Focal adhesion. GO annotations related to this gene include extracellular matrix structural constituent. An important paralog of this gene is LRRTM2.

UniProtKB/Swiss-Prot for CHAD Gene

  • Promotes attachment of chondrocytes, fibroblasts, and osteoblasts. This binding is mediated (at least for chondrocytes and fibroblasts) by the integrin alpha(2)beta(1). May play an important role in the regulation of chondrocyte growth and proliferation (By similarity).

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHAD Gene

Genomics for CHAD Gene

Genomic Location for CHAD Gene

Start:
50,464,492 bp from pter
End:
50,468,966 bp from pter
Size:
4,475 bases
Orientation:
Minus strand

Genomic View for CHAD Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CHAD Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHAD Gene

Regulatory Elements for CHAD Gene

Proteins for CHAD Gene

  • Protein details for CHAD Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O15335-CHAD_HUMAN
    Recommended name:
    Chondroadherin
    Protein Accession:
    O15335
    Secondary Accessions:
    • A8K812
    • Q6GTU0
    • Q96RJ5

    Protein attributes for CHAD Gene

    Size:
    359 amino acids
    Molecular mass:
    40476 Da
    Quaternary structure:
    • Mostly monomeric (By similarity). Interacts with collagen type II.

neXtProt entry for CHAD Gene

Proteomics data for CHAD Gene at MOPED

Post-translational modifications for CHAD Gene

Other Protein References for CHAD Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CHAD Gene

Domains for CHAD Gene

Gene Families for CHAD Gene

HGNC:
  • SLRR :Proteoglycans / Extracellular Matrix : Small leucine-rich repeats

UniProtKB/Swiss-Prot:

CHAD_HUMAN
Domain:
  • Contains 1 LRRCT domain.:
    • O15335
  • Contains 1 LRRNT domain.:
    • O15335
Family:
  • Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class IV subfamily.:
    • O15335
Similarity:
  • Contains 9 LRR (leucine-rich) repeats.:
    • O15335
genes like me logo Genes that share domains with CHAD: view

Function for CHAD Gene

Molecular function for CHAD Gene

GENATLAS Biochemistry: chondroadherin,36kDa,expressed in chodrocytes,leucine-rich repeat (LRR) family
UniProtKB/Swiss-Prot Function: Promotes attachment of chondrocytes, fibroblasts, and osteoblasts. This binding is mediated (at least for chondrocytes and fibroblasts) by the integrin alpha(2)beta(1). May play an important role in the regulation of chondrocyte growth and proliferation (By similarity).

Gene Ontology (GO) - Molecular Function for CHAD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with CHAD: view

Phenotypes for CHAD Gene

genes like me logo Genes that share phenotypes with CHAD: view

Animal Models for CHAD Gene

MGI Knock Outs for CHAD:

No data available for Enzyme Numbers (IUBMB) , miRNA , Transcription Factor Targeting and HOMER Transcription for CHAD Gene

Localization for CHAD Gene

Subcellular locations from UniProtKB/Swiss-Prot for CHAD Gene

Secreted, extracellular space, extracellular matrix.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CHAD Gene COMPARTMENTS Subcellular localization image for CHAD gene
Compartment Confidence
extracellular 5
cytosol 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for CHAD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005578 proteinaceous extracellular matrix IEA --
genes like me logo Genes that share ontologies with CHAD: view

Pathways for CHAD Gene

genes like me logo Genes that share pathways with CHAD: view

Pathways by source for CHAD Gene

1 BioSystems pathway for CHAD Gene

Gene Ontology (GO) - Biological Process for CHAD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001502 cartilage condensation IEA --
GO:0060348 bone development IEA --
GO:1900155 negative regulation of bone trabecula formation IEA --
genes like me logo Genes that share ontologies with CHAD: view

Compounds for CHAD Gene

(2) Novoseek inferred chemical compound relationships for CHAD Gene

Compound -log(P) Hits PubMed IDs
glycosaminoglycan 40.6 1
leucine 36.5 2
genes like me logo Genes that share compounds with CHAD: view

Transcripts for CHAD Gene

mRNA/cDNA for CHAD Gene

Unigene Clusters for CHAD Gene

Chondroadherin:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CHAD Gene

No ASD Table

Relevant External Links for CHAD Gene

GeneLoc Exon Structure for
CHAD
ECgene alternative splicing isoforms for
CHAD

Expression for CHAD Gene

mRNA expression in normal human tissues for CHAD Gene

mRNA differential expression in normal tissues according to GTEx for CHAD Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (5.2), Brain - Cerebellum (5.1), Liver (5.1), and Pancreas (4.7).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for CHAD Gene

SOURCE GeneReport for Unigene cluster for CHAD Gene Hs.97220

mRNA Expression by UniProt/SwissProt for CHAD Gene

O15335-CHAD_HUMAN
Tissue specificity: Present in chondrocytes at all ages
genes like me logo Genes that share expressions with CHAD: view

Orthologs for CHAD Gene

This gene was present in the common ancestor of animals.

Orthologs for CHAD Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CHAD 36
  • 99.44 (n)
  • 99.72 (a)
CHAD 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CHAD 36
  • 91.89 (n)
  • 97.03 (a)
CHAD 37
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CHAD 36
  • 90.81 (n)
  • 97.49 (a)
CHAD 37
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Chad 36
  • 87.44 (n)
  • 94.66 (a)
Chad 16
Chad 37
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CHAD 37
  • 87 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Chad 36
  • 87.93 (n)
  • 94.07 (a)
chicken
(Gallus gallus)
Aves CHAD 36
  • 71.61 (n)
  • 67.36 (a)
CHAD 37
  • 65 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CHAD 37
  • 71 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia chad 36
  • 68.84 (n)
  • 68.25 (a)
zebrafish
(Danio rerio)
Actinopterygii chad 36
  • 64.48 (n)
  • 62.5 (a)
chad 37
  • 59 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta haf 37
  • 7 (a)
OneToMany
Species with no ortholog for CHAD:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CHAD Gene

ENSEMBL:
Gene Tree for CHAD (if available)
TreeFam:
Gene Tree for CHAD (if available)

Paralogs for CHAD Gene

Selected SIMAP similar genes for CHAD Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with CHAD: view

Variants for CHAD Gene

Sequence variations from dbSNP and Humsavar for CHAD Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
VAR_030631 -
VAR_052019 -

Structural Variations from Database of Genomic Variants (DGV) for CHAD Gene

Variant ID Type Subtype PubMed ID
nsv833476 CNV Loss 17160897
dgv3228n71 CNV Gain 21882294
nsv908600 CNV Gain 21882294
nsv2081 CNV Loss 18451855

Relevant External Links for CHAD Gene

HapMap Linkage Disequilibrium report
CHAD

Disorders for CHAD Gene

No disorders were found for CHAD Gene.

No data available for UniProtKB/Swiss-Prot for CHAD Gene

Publications for CHAD Gene

  1. The structure and chromosome location of the human chondroadherin gene (CHAD). (PMID: 9344663) Grover J. … Roughley P.J. (Genomics 1997) 2 3 4 23
  2. Association of chondroadherin with collagen type II. (PMID: 11445564) Maansson B. … Heinegaard D. (J. Biol. Chem. 2001) 3 4 23
  3. Variation in chondroadherin abundance and fragmentation in the human scoliotic disc. (PMID: 19525844) Haglund L. … Roughley P. (Spine 2009) 3 23
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Integrin alpha2beta1 is a receptor for the cartilage matrix protein chondroadherin. (PMID: 9281592) Camper L. … Lundgren-Akerlund E. (J. Cell Biol. 1997) 3 23

Products for CHAD Gene

Sources for CHAD Gene

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