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CHAC2 Gene

protein-coding   GIFtS: 44
GCID: GC02P053994

ChaC, Cation Transport Regulator Homolog 2 (E. Coli)

(Previous names: ChaC, cation transport regulator-like 2 (E. coli))
  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
ChaC, Cation Transport Regulator Homolog 2 (E. Coli)1 2
Gamma-GCT Acting On Glutathione Homolog 21 2
ChaC, Cation Transport Regulator-Like 2 (E. Coli)1
Cation Transport Regulator-Like Protein 22
ChaC, Cation Transport Regulator-Like 22

External Ids:    HGNC: 323631   Entrez Gene: 4941432   Ensembl: ENSG000001439427   UniProtKB: Q8WUX23   

Export aliases for CHAC2 gene to outside databases

Previous GC identifers: GC02U900806 GC02P053848 GC02P053729


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for CHAC2 Gene:
CHAC2 (ChaC, cation transport regulator homolog 2 (E. coli)) is a protein-coding gene. Diseases associated with CHAC2 include malaria. An important paralog of this gene is CHAC1.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000002.12  NC_018913.2  NT_022184.16  
Regulatory elements:
   Regulatory transcription factor binding sites in the CHAC2 gene promoter:
         Nkx2-2   p300   FOXO3   FOXO3b   C/EBPalpha   POU2F1   POU2F1b   POU2F1a   FOXO3a   POU2F1c   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCHAC2 promoter sequence
   Search Chromatin IP Primers for CHAC2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CHAC2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2p16   Ensembl cytogenetic band:  2p16.2   HGNC cytogenetic band: 2p16

CHAC2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CHAC2 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02P053994:  view genomic region     (about GC identifiers)

Start:
53,994,929 bp from pter      End:
54,002,333 bp from pter
Size:
7,405 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: CHAC2_HUMAN, Q8WUX2 (See protein sequence)
Recommended Name: Cation transport regulator-like protein 2  
Size: 184 amino acids; 20875 Da
Secondary accessions: Q8WVI8

Explore the universe of human proteins at neXtProt for CHAC2: NX_Q8WUX2

Explore proteomics data for CHAC2 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys178
  • Modification sites at PhosphoSitePlus

  • See CHAC2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001008708.1  
    ENSEMBL proteins: 
     ENSP00000295304  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    2 InterPro protein domains:
     IPR013024 Butirosin_synth_BtrG-like
     IPR006840 ChaC

    Graphical View of Domain Structure for InterPro Entry Q8WUX2

    ProtoNet protein and cluster: Q8WUX2

    UniProtKB/Swiss-Prot: CHAC2_HUMAN, Q8WUX2
    Similarity: Belongs to the ChaC family


    CHAC2 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
         
    CHAC2 for ontologies           About GeneDecksing


    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for CHAC2
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    1 qRT-PCR Assays for microRNA that regulate CHAC2:
    hsa-miR-3133
    SwitchGear 3'UTR luciferase reporter plasmidCHAC2 3' UTR sequence
    Inhib. RNA
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol2

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--

    CHAC2 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for CHAC2
    Interactions:

        Search GeneGlobe Interaction Network for CHAC2

    STRING Interaction Network Preview (showing 5 interactants - click image to see more details)

    Selected Interacting proteins for CHAC2 (Q8WUX23 ENSP000002953044) via UniProtKB, MINT, STRING, and/or I2D (see all 18)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    UBCP0CG483, ENSP000003448184I2D: score=1 STRING: ENSP00000344818
    EEF2P136393I2D: score=5 
    ENO1P067333I2D: score=5 
    LAMA5O152303I2D: score=5 
    SAP18O004223I2D: score=5 
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--

    CHAC2 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for CHAC2



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for CHAC2 gene: 
    NM_001008708.2  

    Unigene Cluster for CHAC2:

    ChaC, cation transport regulator homolog 2 (E. coli)
    Hs.585944  [show with all ESTs]
    Unigene Representative Sequence: AK097260
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000295304(uc002rxk.1)
    miRNA
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    1 qRT-PCR Assays for microRNA that regulate CHAC2:
    hsa-miR-3133
    SwitchGear 3'UTR luciferase reporter plasmidCHAC2 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat CHAC2
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      QuantiFast Probe-based Assays in human, mouse, rat CHAC2

    Additional mRNA sequence: 

    AK097260.1 BC017941.1 BC019239.1 BC025376.1 BC053896.1 

    3 DOTS entries:

    DT.40199260  DT.91831291  DT.99935593 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    CHAC2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CTTAGAAATA
    CHAC2 Expression
    About this image

    CHAC2 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    CHAC2 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.585944
        Custom PCR Arrays for CHAC2
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CHAC2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of eukaryotes.

    Orthologs for CHAC2 gene from Selected species (see all 21)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Chac21 , 5 ChaC, cation transport regulator homolog 2 (E. coli)5
    ChaC, cation transport regulator 21
    91.76(n)1
    93.82(a)1
      11 (18.20 cM)5
    680441  NM_026527.21  NP_080803.11 
     309767075 
    chicken
    (Gallus gallus)
    Aves CHAC21 ChaC, cation transport regulator homolog 2 (E. coli) 78.49(n)
    83.72(a)
      421221  NM_001031032.1  NP_001026203.1 
    lizard
    (Anolis carolinensis)
    Reptilia CHAC26
    ChaC, cation transport regulator homolog 2 (E. col...
    54(a)
    1 ↔ 1
    1(262999778-263021011)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia chac21 ChaC, cation transport regulator homolog 2 79.71(n)
    87.5(a)
      549891  NM_001017137.2  NP_001017137.1 
    zebrafish
    (Danio rerio)
    Actinopterygii chac21 ChaC, cation transport regulator homolog 2 (E. coli) 67.05(n)
    72.16(a)
      557614  NM_001029957.1  NP_001025128.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG25401 CG2540 52.05(n)
    50.29(a)
      32216  NM_132590.2  NP_572818.1 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes (YER163C)4
    GCG11
    Putative protein of unknown function; green fluorescent more4
    GCG11
    49.46(n)1
    42.58(a)1
      5(503782-503084)4
    8569101, 4  NP_011090.31  NP_011090.14 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT1G447901 AT1G44790 52.06(n)
    46.63(a)
      841043  NM_103560.3  NP_564490.1 
    rice
    (Oryza sativa)
    Liliopsida Os04g04486001 Os04g0448600 57.95(n)
    47.71(a)
      4335982  NM_001059459.1  NP_001052924.1 


    ENSEMBL Gene Tree for CHAC2 (if available)
    TreeFam Gene Tree for CHAC2 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for CHAC2 gene
    CHAC12  
    1 SIMAP similar gene for CHAC2 using alignment to 1 protein entry:     CHAC2_HUMAN:
    CHAC1

    CHAC2 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    1 SNPs for CHAC2    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 2 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs178515831,2,4
    ----see VAR_0381232 mis40--------

    HapMap Linkage Disequilibrium report for CHAC2 (53994929 - 54002333 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for CHAC2:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv834058CNV Gain+Loss17160897

    Site Specific Mutation Identification with PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers for resequencing CHAC2
    DNA2.0 Custom Variant and Variant Library Synthesis for CHAC2

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    1 disease for CHAC2:    
    About MalaCards
    malaria


    CHAC2 for disorders           About GeneDecksing


    Export disorders for CHAC2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for CHAC2 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with CHAC2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Mammalian proapoptotic factor ChaC1 and its homologues function as I^-glutamyl cyclotransferases acting specifically on glutathione. (PubMed id 23070364)1, 3 Kumar A....Bachhawat A.K. (EMBO Rep. 2012)
    2. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
    3. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (Cell 2012)
    4. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (J. Biol. Chem. 2011)
    5. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (amp 2011)
    6. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (Genomics 2007)
    7. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)2 Hillier L.W.... Wilson R.K. (Nature 2005)
    8. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 494143 HGNC: 32363 Ensembl:ENSG00000143942 euGenes: HUgn494143 ECgene: CHAC2
    H-InvDB: CHAC2

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for CHAC2 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for CHAC2 gene:
    Search GeneIP for patents involving CHAC2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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     Custom PCR Arrays for CHAC2 Search Chromatin IP Primers for CHAC2
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     Search for Antibodies & Assays

     Search Tocris compounds for CHAC2
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     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

     Novus Tissue Slides
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     SwitchGear 3'UTR luciferase reporter plasmids for CHAC2
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     Search ThermoFisher Antibodies for CHAC2
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CHAC2
     inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for CHAC2
     inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for CHAC2
     LSBio Antibodies in human, mouse, rat for CHAC2
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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